How to run compset "B1850" & res "T31_g37"

[Kihang Youn]

Hi all,

I am trying to run B1850 & T31_g37 with CESM 2.1.3.
Below are my setup script and create_newecase script created by referring to the url.

Quick Start: CESM Model Workflow (CESM2.1) — CESM CESM2.1 documentation

git clone -b release-cesm2.1.3 https://github.com/ESCOMP/CESM.git my_cesm_sandbox

cd my_cesm_sandbox
# svn ls https://svn-ccsm-models.cgd.ucar.edu/ww3/release_tags # Select permanently
./manage_externals/checkout_externals -S
./manage_externals/checkout_externals --logging

export PATH=$PATH:/home/kyoun/IBS/CESM/my_cesm_sandbox/cime/scripts:/home/kyoun/IBS/CESM/my_cesm_sandbox/cime/scripts/Tools
export DIN_LOC_ROOT=/home/kyoun/IBS/CESM/input_set

rm -rf /home/kyoun/cesm/scratch/LOW_RES
rm -rf LOW_RES
create_newcase --mach centos7-linux --case LOW_RES --compset B1850 --res T31_g37 --run-unsupported
cd LOW_RES
./case.setup
#./case.build --clean
./case.build
#./preview_run

But I got the following error message related to build-namelist
Please let me know if any suggestions.

Compset longname is 1850_CAM60_CLM50%BGC-CROP_CICE_POP2%ECO%ABIO-DIC_MOSART_CISM2%NOEVOLVE_WW3_BGC%BDRD
Compset specification file is /gpfs/gss1/home/kyoun/IBS/CESM/my_cesm_sandbox/cime/../cime_config/config_compsets.xml
Compset forcing is 1850
Com forcing is Biogeochemistry intercomponent with diagnostic CO2
ATM component is CAM cam6 physics:
LND component is clm5.0:BGC (vert. resol. CN and methane) with prognostic crop:
ICE component is Sea ICE (cice) model version 5
OCN component is POP2 EcosystemAbiotic DIC/DIC14
ROF component is MOSART: MOdel for Scale Adaptive River Transport
GLC component is cism2 (default, higher-order, can run in parallel):cism ice evolution turned off (this is the standard configuration unless you're explicitly interested in ice evolution):
WAV component is Wave Watch
ESP component is
Pes specification file is /gpfs/gss1/home/kyoun/IBS/CESM/my_cesm_sandbox/cime/../cime_config/config_pes.xml
Compset specific settings: name is RUN_STARTDATE and value is 0001-01-01
Could not find machine match for 'login2302.hpc.eu.lenovo.com' or 'login2302.hpc.eu.lenovo.com'
Machine is centos7-linux
Pes setting: grid is a%T31_l%T31_oi%gx3v7_r%r05_g%gland4_w%ww3a_m%gx3v7
Pes setting: compset is 1850_CAM60_CLM50%BGC-CROP_CICE_POP2%ECO%ABIO-DIC_MOSART_CISM2%NOEVOLVE_WW3_BGC%BDRD
Pes setting: tasks is {'NTASKS_ATM': -3, 'NTASKS_LND': -1, 'NTASKS_ROF': -1, 'NTASKS_ICE': -2, 'NTASKS_OCN': -1, 'NTASKS_GLC': -1, 'NTASKS_WAV': -1, 'NTASKS_CPL': -3}
Pes setting: threads is {'NTHRDS_ATM': 1, 'NTHRDS_LND': 1, 'NTHRDS_ROF': 1, 'NTHRDS_ICE': 1, 'NTHRDS_OCN': 1, 'NTHRDS_GLC': 1, 'NTHRDS_WAV': 1, 'NTHRDS_CPL': 1}
Pes setting: rootpe is {'ROOTPE_ATM': 0, 'ROOTPE_LND': 0, 'ROOTPE_ROF': 0, 'ROOTPE_ICE': -1, 'ROOTPE_OCN': -3, 'ROOTPE_GLC': 0, 'ROOTPE_WAV': 0, 'ROOTPE_CPL': 0}
Pes setting: pstrid is {}
Pes other settings: {}
Pes comments: none
Compset is: 1850_CAM60_CLM50%BGC-CROP_CICE_POP2%ECO%ABIO-DIC_MOSART_CISM2%NOEVOLVE_WW3_BGC%BDRD
Grid is: a%T31_l%T31_oi%gx3v7_r%r05_g%gland4_w%ww3a_m%gx3v7
Components in compset are: ['cam', 'clm', 'cice', 'pop', 'mosart', 'cism', 'ww3', 'sesp', 'drv', 'dart']
Using project from config_machines.xml: none
No charge_account info available, using value from PROJECT
Using project from config_machines.xml: none
cesm model version found: cesm2.1.3-rc.01
Batch_system_type is none
Creating Case directory /gpfs/gss1/home/kyoun/IBS/CESM/LOW_RES
Setting resource.RLIMIT_STACK to -1 from (8388608, -1)
/gpfs/gss1/home/kyoun/IBS/CESM/LOW_RES/env_mach_specific.xml already exists, delete to replace
Creating batch scripts
Writing case.run script from input template /gpfs/gss1/home/kyoun/IBS/CESM/my_cesm_sandbox/cime/config/cesm/machines/template.case.run
Creating file .case.run
Writing case.st_archive script from input template /gpfs/gss1/home/kyoun/IBS/CESM/my_cesm_sandbox/cime/config/cesm/machines/template.st_archive
Creating file case.st_archive
Creating user_nl_xxx files for components and cpl
If an old case build already exists, might want to run 'case.build --clean' before building
You can now run './preview_run' to get more info on how your case will be run
Building case in directory /gpfs/gss1/home/kyoun/IBS/CESM/LOW_RES
sharedlib_only is False
model_only is False
Setting resource.RLIMIT_STACK to -1 from (8388608, -1)
Generating component namelists as part of build
Creating component namelists
Calling /gpfs/gss1/home/kyoun/IBS/CESM/my_cesm_sandbox/components/cam//cime_config/buildnml
...calling cam buildcpp to set build time options
ERROR: Command /gpfs/gss1/home/kyoun/IBS/CESM/my_cesm_sandbox/components/cam/bld/build-namelist -ntasks 24 -csmdata /home/kyoun/cesm/inputdata -infile /gpfs/gss1/home/kyoun/IBS/CESM/LOW_RES/Buildconf/camconf/namelist -ignore_ic_year -use_case 1850_cam6 -inputdata /gpfs/gss1/home/kyoun/IBS/CESM/LOW_RES/Buildconf/cam.input_data_list -namelist " &atmexp co2_cycle_rad_passive=.true. /" failed rc=255
out=CAM build-namelist - ERROR: No default value found for ncdata
user defined attributes:
key=ic_md val=00010101
err=Died at /gpfs/gss1/home/kyoun/IBS/CESM/my_cesm_sandbox/components/cam/bld/build-namelist line 4054.

 

[katec]

It looks like this compset is not fully supported with this grid. The ncdata files are used by the atmosphere, so I'll move this into the CAM area to see if anybody can help you find this file.

 

[Kihang Youn]

Hello, Katec.

Thanks for your reply.
One thing I want to say is that I want to know how CESM works with regards to downloading input data and installing numerical libraries.
So it doesn't matter what kind of compset and resolution is used.
Could you recommend a set of well-known components and resolutions for running CESM so I can try doing it myself?
Thank you in advance.

Kihang

 

[cacraig]

I would refer you to the CAM6.3 User's Guide. Specifically the section: " 4. Atmospheric configurations (compsets) — camdoc documentation " lists valid compset/resolution combinations