How to submit the job to batch system in clm5.0?

[ncepulee@126_com]

Dear all. I have problem during submit the job to batch system in clm5.0. When i type ./case.submit, there are no cesm.logxxxx in $RUNDIR and cesm.stdoutxxxx in $CASEROOT. However, when i directly type bsub -W 23:59 < .case.run, cesm.logxxx and cesm.stdoutxxx can be generated. I guess there are some wrong setting in config_batch.xml or other files, but i cannot find the exact reason. Can anybody give me some suggesion? Really appreciate that !

The followings are some information:

./create_newcase --case test_case2 --res f19_g16 --compset X -mach cern --run-unsupported

./preview_run

CASE INFO:
nodes: 13
total tasks: 312
tasks per node: 24
thread count: 1

BATCH INFO:
FOR JOB: case.run
ENV:
Setting Environment OMP_STACKSIZE=256M
Setting Environment OMP_NUM_THREADS=1

SUBMIT CMD:
bsub "all, ARGS_FOR_SCRIPT=--resubmit" < .case.run

MPIRUN (job=case.run):
mpijob.intelmpi /work2/cern1426/clm5/test_case2/bld/cesm.exe >> cesm.log.$LID 2>&1

FOR JOB: case.st_archive
ENV:
Setting Environment OMP_STACKSIZE=256M
Setting Environment OMP_NUM_THREADS=1

SUBMIT CMD:
bsub -w 'done(0)' "all, ARGS_FOR_SCRIPT=--resubmit" < case.st_archive

Config_batch.xml

<batch_system type="lsf">
<batch_query args=" -w" >bjobs</batch_query>
<batch_submit>bsub</batch_submit>
<batch_cancel>bkill</batch_cancel>
<batch_redirect>&lt;</batch_redirect>
<batch_env> </batch_env>
<batch_directive>#BSUB</batch_directive>
<jobid_pattern>&lt;(\d+)&gt;</jobid_pattern>
<depend_string> -w 'done(jobid)'</depend_string>
<depend_allow_string> -w 'ended(jobid)'</depend_allow_string>
<depend_separator>&amp;&amp;</depend_separator>
<directives>
<directive > -J {{ job_id }} </directive>
<directive > -n {{ total_tasks }} </directive>
<directive > -W $JOB_WALLCLOCK_TIME </directive>
<directive default="cesm.stdout" > -o {{ job_id }}.%J </directive>
<directive default="cesm.stderr" > -e {{ job_id }}.%J </directive>
<directive > -R "span[ptile={{ tasks_per_node }}]"</directive>
</directives>
<queues>
<queue walltimemax="23:59">cpuII</queue>
</queues>

</batch_system>

 

[oleson]

Unless someone else has a solution for this, I suggest also posting this question on the Infrastructure (cime, porting, ...) forum:

Infrastructure (CIME, porting, machines, scripts)

CIME, case control system, build and configure, machines and supporting scripts.

bb.cgd.ucar.edu

 

[ncepulee@126_com]

Thanks for reminding. I have posted a new thread on Infrastructure forum.