install cesm2_3_alpha16g with CLUBB_core path not found

[ysjang]

Hi all,
Regarding updating the version of CESM on our lab's server, we encountered the following issue message during the execution of ./manage_externals/checkout_externals. I have identified a solution for CESM 2.2.X; however, we aim to install CESM 2.3 alpha16g specifically for biomass heat storage parameterization. Kindly inform me if you have any suggestions, and feel free to ask for any additional information if needed. Thanks!

./manage_externals/checkout_externals
......
ali_arms, carma, clubb, ERROR:root:Command '['svn', 'checkout', '--quiet', 'https://github.com/larson-group/clu...129_59cb19f_20230330_branchtag/src/CLUBB_core', '/work/share/model/cesm/cesm2_3_alpha16g/components/cam/src/physics/clubb']' returned non-zero exit status 1.
ERROR:root:Failed with output:
svn: E170013: Unable to connect to a repository at URL 'https://github.com/larson-group/clu...129_59cb19f_20230330_branchtag/src/CLUBB_core
svn: E160013: '/larson-group/clubb_release/tags/clubb_4ncar_20221129_59cb19f_20230330_branchtag/src/CLUBB_core' path not found

Best,
Yi-Shin

 

[mlevy]

Github no longer provides SVN hooks to check out repositories; can you switch to cesm2_3_alpha17a? That version of CESM should use a git sparse checkout instead of subversion.

I'm also going to move this to the CAM forum, in case any of the CAM folks have more specific suggestions for you.

 

[ysjang]

Hi Michael,
Thanks for the suggestion. I git clone the cesm2_3_alpha17a and checkout successfully.

Best,

 

[ysjang]

Hi all,
Regarding the cesm2_3_alpha17a, I got some similar issues about cloning or downloading surface data. I tried to run SCAM using compset FSCAM --res T42_T42 to create a new case. However, there were some error messages for missing data:

File not found: model_meshfile = /work/cesm/inputdata/share/meshes/T42_ESMFmesh_c20200629.nc, will attempt to download in check_input_data phase
File not found: model_maskfile = /work/cesm/inputdata/share/meshes/gx1v7_151008_ESMFmesh.nc, will attempt to download in check_input_data phase
File not found: mesh_atm = /work/cesm/inputdata/share/meshes/T42_ESMFmesh_c20200629.nc, will attempt to download in check_input_data phase
File not found: mesh_ice = /work/cesm/inputdata/share/meshes/T42_ESMFmesh_c20200629.nc, will attempt to download in check_input_data phase
File not found: mesh_lnd = /work/cesm/inputdata/share/meshes/T42_ESMFmesh_c20200629.nc, will attempt to download in check_input_data phase
File not found: mesh_ocn = /work/cesm/inputdata/share/meshes/T42_ESMFmesh_c20200629.nc, will attempt to download in check_input_data phase

Feel free to let me know if I should provide more information. I appreciate any further suggestions. Thanks!

 

[peverley]

Hi Yi-Shin,

I can't quite tell based on your screenshots, but it looks like (in the second screenshot) one problem is that this file is missing: /work/cesm/inputdata/lnd/clm2/surfdata_esmf/ctsm5.2.0/surfdata_T42_hist_16pfts_CMIP6_2000_c230517.nc

Are you modifying fsurdat via the namelist (user_nl_clm)?

When I run ./create_newcase with resolution T42_T42 and compset FSCAM, the default fsurdat is $INPUTDATA/lnd/clm2/surfdata_map/release-clm5.0.18/surfdata_64x128_hist_16pfts_Irrig_CMIP6_simyr2000_c190214.nc'

Try adding this line to your user_nl_clm file:

fsurdat = '/work/cesm/inputdata/lnd/clm2/surfdata_map/release-clm5.0.18/surfdata_64x128_hist_16pfts_Irrig_CMIP6_simyr2000_c190214.nc'

Courtney

 

[ysjang]

Hi all,
Appreciate the assistance once again. When checking the error message and the input surface data folder on our local server, we encountered an issue while attempting to download the T42 resolution surface data for SCAM from FTP.

Trying to download file: 'lnd/clm2/surfdata_esmf/ctsm5.2.0/surfdata_T42_hist_16pfts_CMIP6_2000_c230517.nc' to path '/work/cesm/inputdata/lnd/clm2/surfdata_esmf/ctsm5.2.0/surfdata_T42_hist_16pfts_CMIP6_2000_c230517.nc' using SVN protocol.
svn export failed with output: and errput svn: E170000: URL 'https://svn-ccsm-inputdata.cgd.ucar...urfdata_T42_hist_16pfts_CMIP6_2000_c230517.nc' doesn't exist

However, after downloading the T42 resolution surface data from Derecho to the local server, the job could be submitted successfully.

Thanks!