Issue building cesm1_2_0

[shivali@ncmrwf_gov_in]

I am facing issue while building cesm1_2_0 -

[ncmr0102][/gpfs1/home/shivali/work/cesm/cesm1_2_0/scripts/newcase]> ./newcase.build
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CESM BUILDNML SCRIPT STARTING
- To prestage restarts, untar a restart.tar file into /gpfs1/home/shivali/work/cesm/cesm1_2_0/scripts/newcase
infile is /gpfs1/home/shivali/work/cesm/cesm1_2_0/scripts/newcase/Buildconf/cplconf/cesm_namelist
CESM BUILDNML SCRIPT HAS FINISHED SUCCESSFULLY
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CESM PRESTAGE SCRIPT STARTING
- Case input data directory, DIN_LOC_ROOT, is /gpfs1/home/shivali/work/cesm/cesm1_2_0/scripts
- Checking the existence of input datasets in DIN_LOC_ROOT
CESM PRESTAGE SCRIPT HAS FINISHED SUCCESSFULLY
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CESM BUILDEXE SCRIPT STARTING
COMPILER is xlc,xlf,xlC
- Build Libraries: mct gptl pio csm_share
Tue Mar 18 14:23:10 IST 2014 /gpfs1/home/shivali/work/cesm/cesm1_2_0/scripts/newcase/mct/mct.bldlog.140318-142308
Tue Mar 18 14:23:11 IST 2014 /gpfs1/home/shivali/work/cesm/cesm1_2_0/scripts/newcase/gptl/gptl.bldlog.140318-142308
Tue Mar 18 14:23:12 IST 2014 /gpfs1/home/shivali/work/cesm/cesm1_2_0/scripts/newcase/pio/pio.bldlog.140318-142308
Tue Mar 18 14:23:12 IST 2014 /gpfs1/home/shivali/work/cesm/cesm1_2_0/scripts/newcase/csm_share/csm_share.bldlog.140318-142308
Tue Mar 18 14:23:14 IST 2014 /gpfs1/home/shivali/work/cesm/cesm1_2_0/scripts/newcase/atm.bldlog.140318-142308
Tue Mar 18 14:23:14 IST 2014 /gpfs1/home/shivali/work/cesm/cesm1_2_0/scripts/newcase/lnd.bldlog.140318-142308
Tue Mar 18 14:23:14 IST 2014 /gpfs1/home/shivali/work/cesm/cesm1_2_0/scripts/newcase/ice.bldlog.140318-142308
Tue Mar 18 14:23:15 IST 2014 /gpfs1/home/shivali/work/cesm/cesm1_2_0/scripts/newcase/ocn.bldlog.140318-142308
Tue Mar 18 14:23:15 IST 2014 /gpfs1/home/shivali/work/cesm/cesm1_2_0/scripts/newcase/glc.bldlog.140318-142308
Tue Mar 18 14:23:15 IST 2014 /gpfs1/home/shivali/work/cesm/cesm1_2_0/scripts/newcase/wav.bldlog.140318-142308
Tue Mar 18 14:23:15 IST 2014 /gpfs1/home/shivali/work/cesm/cesm1_2_0/scripts/newcase/rof.bldlog.140318-142308
Tue Mar 18 14:23:16 IST 2014 /gpfs1/home/shivali/work/cesm/cesm1_2_0/scripts/newcase/cesm.bldlog.140318-142308
ERROR: cesm.buildexe.csh failed, see /gpfs1/home/shivali/work/cesm/cesm1_2_0/scripts/newcase/cesm.bldlog.140318-142308
ERROR: cat /gpfs1/home/shivali/work/cesm/cesm1_2_0/scripts/newcase/cesm.bldlog.140318-142308
[ncmr0102][/gpfs1/home/shivali/work/cesm/cesm1_2_0/scripts/newcase]>


========================================================================================

cesm log file states (undefined flush)-

[ncmr0102][/gpfs1/home/shivali/work/cesm/cesm1_2_0/scripts/newcase]> cat /gpfs1/home/shivali/work/cesm/cesm1_2_0/scripts/newcase/cesm.bldlog.140318-142308
Tue Mar 18 14:23:16 IST 2014 /gpfs1/home/shivali/work/cesm/cesm1_2_0/scripts/newcase/cesm.bldlog.140318-142308
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Building a single executable version of CESM
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/gpfs1/home/shivali/work/cesm/cesm1_2_0/scripts/newcase/Tools/mkSrcfiles
cp -f /gpfs1/home/shivali/work/cesm/cesm1_2_0/scripts/newcase/cesm/obj/Filepath /gpfs1/home/shivali/work/cesm/cesm1_2_0/scripts/newcase/cesm/obj/Deppath
/gpfs1/home/shivali/work/cesm/cesm1_2_0/scripts/newcase/Tools/mkDepends Deppath Srcfiles > /gpfs1/home/shivali/work/cesm/cesm1_2_0/scripts/newcase/cesm/obj/Depends
/gpfs1/home/shivali/work/cesm/cesm1_2_0/scripts/newcase/Tools/mkSrcfiles
/gpfs1/home/shivali/work/sw/fresh/mpich-3.0.4/mpich/bin/mpif90 -o /gpfs1/home/shivali/work/cesm/cesm1_2_0/scripts/newcase/cesm.exe ccsm_comp_mod.o ccsm_driver.o mrg_mod.o seq_avdata_mod.o seq_diag_mct.o seq_domain_mct.o seq_flux_mct.o seq_frac_mct.o seq_hist_mod.o seq_map_esmf.o seq_map_mod.o seq_mctext_mod.o seq_rest_mod.o -L/gpfs1/home/shivali/work/cesm/cesm1_2_0/scripts/newcase/lib/ -latm -L/gpfs1/home/shivali/work/cesm/cesm1_2_0/scripts/newcase/lib/ -lice -L/gpfs1/home/shivali/work/cesm/cesm1_2_0/scripts/newcase/lib/ -llnd -L/gpfs1/home/shivali/work/cesm/cesm1_2_0/scripts/newcase/lib/ -locn -L/gpfs1/home/shivali/work/cesm/cesm1_2_0/scripts/newcase/lib/ -lrof -L/gpfs1/home/shivali/work/cesm/cesm1_2_0/scripts/newcase/lib/ -lglc -L/gpfs1/home/shivali/work/cesm/cesm1_2_0/scripts/newcase/lib/ -lwav -L/gpfs1/home/shivali/work/cesm/cesm1_2_0/scripts/newcase/lib -lcsm_share -L/gpfs1/home/shivali/work/cesm/cesm1_2_0/scripts/newcase/mct/mct -lmct -L/gpfs1/home/shivali/work/cesm/cesm1_2_0/scripts/newcase/mct/mpeu -lmpeu -L/gpfs1/home/shivali/work/cesm/cesm1_2_0/scripts/newcase/pio -lpio -lgptl -I/gpfs1/home/shivali/work/cesm/cesm1_2_0/scripts/newcase/lib/include -L/gpfs1/home/shivali/work/sw/fresh/new/netcdf-4.3.1.1/lib -L/gpfs1/home/shivali/work/sw/fresh/new/parallel-netcdf-1.3.1/lib -lnetcdff -lnetcdf -L/gpfs1/home/shivali/work/sw/fresh/new/parallel-netcdf-1.3.1/lib -lpnetcdf -L/gpfs1/home/shivali/work/sw/fresh/mpich-3.0.4/mpich/lib -lmpich -I/gpfs1/home/shivali/work/cesm/cesm1_2_0/scripts/newcase/lib/include -L/gpfs1/home/shivali/work/sw/fresh/new/netcdf-4.3.1.1/lib -L/gpfs1/home/shivali/work/sw/fresh/new/parallel-netcdf-1.3.1/lib
ld: 0711-317 ERROR: Undefined symbol: .flush
ld: 0711-345 Use the -bloadmap or -bnoquiet option to obtain more information.
gmake: *** [/gpfs1/home/shivali/work/cesm/cesm1_2_0/scripts/newcase/cesm.exe] Error 8
[ncmr0102][/gpfs1/home/shivali/work/cesm/cesm1_2_0/scripts/newcase]>



Please help

 

[jedwards]

This looks like the IBM xlf / xlc compiler set ... if so you need to add the flag

-qextname=flush  to your FFLAGS.