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non-existent of input data

W

wrfhelp@gmail_com

New Member
Hi All,I am running CAM-Chem in CESM using our linux cluster. The compent set of F_2000_STRAMAM3_CN is selected. I got the following error message when I checked the input data during building the case, I would appreciate if some one could help me solve the problem.Feng---:./check_input_data -inputdata...svn: URL 'https://svn-ccsm-inputdata.cgd.ucar.edu/trunk/inputdata/atm/cam/chem/ic/f2000.e12_rel07_chem.STRATMAM3_CN.f19.f19.relv1.cam.i.0011-01-01-00000_c140430.nc' non-existent in that revision File was not found in svn repo: https://svn-ccsm-inputdata.cgd.ucar.edu/trunk/inputdata/atm/cam/chem/ic/f2000.e12_rel07_chem.STRATMAM3_CN.f19.f19.relv1.cam.i.0011-01-01-00000_c140430.nc   
 
W

wrfhelp@gmail_com

New Member
Simone, Thank you very mcuh. I got the file successfully after I noticed that it added there. I got the new errors below when I rebuild my case:   CESM BUILDEXE SCRIPT STARTINGrm: No match. COMPILER is pgi - Build Libraries: mct gptl pio csm_share Thu Feb 12 14:49:13 MST 2015 /home/fliu/cesm1_2_2/work/pgi/mpich2/nodebug/nothreads/mct.bldlog.150212-144907Thu Feb 12 14:50:26 MST 2015 /home/fliu/cesm1_2_2/work/pgi/mpich2/nodebug/nothreads/gptl.bldlog.150212-144907Thu Feb 12 14:50:30 MST 2015 /home/fliu/cesm1_2_2/work/pgi/mpich2/nodebug/nothreads/pio.bldlog.150212-144907ERROR: buildlib.pio failed, see /home/fliu/cesm1_2_2/work/pgi/mpich2/nodebug/nothreads/pio.bldlog.150212-144907ERROR: cat /home/fliu/cesm1_2_2/work/pgi/mpich2/nodebug/nothreads/pio.bldlog.150212-144907 ---Please see the file "pio.bldlog.150212-144907.txt" attached. Thank you very much for taking the time to check. Feng  
 
W

wrfhelp@gmail_com

New Member
Hi Simone,The error in my previous post is related to Cmake. It has been fixed after installation of CMAKE. But I still can not pass the build step revceiving the following error message which indicates the buildlib.pio failed, please also see the attached "pio.bldlog.150217-144134.txt". Thanks for your any help.Feng ------------------------------------------------------------------------- CESM BUILDNML SCRIPT STARTING - To prestage restarts, untar a restart.tar file into /home/fliu/cesm1_2_2/work/CAM_chem.MAG.test01/run infile is /home/fliu/cesm1_2_2/work/CAM_chem.MAG.test01/Buildconf/cplconf/cesm_namelist CAM writing dry deposition namelist to drv_flds_in Writing ocean component namelist to ./docn_in CAM writing namelist to atm_in CLM configure done.CLM adding use_case 2000_control defaults for var sim_year with val 2000 CLM adding use_case 2000_control defaults for var sim_year_range with val constant CLM adding use_case 2000_control defaults for var stream_year_first_ndep with val 2000 CLM adding use_case 2000_control defaults for var stream_year_last_ndep with val 2000 CLM adding use_case 2000_control defaults for var use_case_desc with val Conditions to simulate 2000 land-use CICE configure done. CESM BUILDNML SCRIPT HAS FINISHED SUCCESSFULLY-------------------------------------------------------------------------------------------------------------------------------------------------- CESM PRESTAGE SCRIPT STARTING - Case input data directory, DIN_LOC_ROOT, is /home/fliu/cesm1_2_2/inputdata - Checking the existence of input datasets in DIN_LOC_ROOT CESM PRESTAGE SCRIPT HAS FINISHED SUCCESSFULLY-------------------------------------------------------------------------------------------------------------------------------------------------- CESM BUILDEXE SCRIPT STARTINGrm: No match. COMPILER is pgi - Build Libraries: mct gptl pio csm_share Tue Feb 17 14:41:40 MST 2015 /home/fliu/cesm1_2_2/work/bin/pgi/mpi/nodebug/nothreads/mct.bldlog.150217-144134Tue Feb 17 14:42:29 MST 2015 /home/fliu/cesm1_2_2/work/bin/pgi/mpi/nodebug/nothreads/gptl.bldlog.150217-144134Tue Feb 17 14:42:32 MST 2015 /home/fliu/cesm1_2_2/work/bin/pgi/mpi/nodebug/nothreads/pio.bldlog.150217-144134ERROR: buildlib.pio failed, see /home/fliu/cesm1_2_2/work/bin/pgi/mpi/nodebug/nothreads/pio.bldlog.150217-144134 ERROR: cat /home/fliu/cesm1_2_2/work/bin/pgi/mpi/nodebug/nothreads/pio.bldlog.150217-144134 
 
J

jedwards

CSEG and Liaisons
Staff member

Code: 
> PGF90-F-0004-Corrupt or Old Module file /usr/local/include/netcdf.mod<br /><br />This error indicates that netcdf was not built with the same compiler that you are trying to build CESM with.   <br />You may be able to get around this error by adding the flag -DNO_MPIMOD to the CPPFLAGS in your Macros file, if that doesn't work<br />you will need to build netcdf with the current compiler.
 
W

wrfhelp@gmail_com

New Member
Thank you very mcuh, jewards - ESM Software Engineer. The problem on NETCDF is fixed  after I re-build netcdf with the same compiler mpif90. Then I ran the model with our Linux cluster and got the following message which indicates the model run is not successfully finsihed. Please also find cesm log file attached. Thanks for taking the time to check and support:------------------------------------------------------------------------- CESM BUILDNML SCRIPT STARTING - To prestage restarts, untar a restart.tar file into /home/fliu/cesm1_2_2/work/CAM_chem.MAG.test01/run infile is /home/fliu/cesm1_2_2/work/CAM_chem.MAG.test01/Buildconf/cplconf/cesm_namelist CAM writing dry deposition namelist to drv_flds_in Writing ocean component namelist to ./docn_in CAM writing namelist to atm_in CLM configure done.CLM adding use_case 2000_control defaults for var sim_year with val 2000 CLM adding use_case 2000_control defaults for var sim_year_range with val constant CLM adding use_case 2000_control defaults for var stream_year_first_ndep with val 2000 CLM adding use_case 2000_control defaults for var stream_year_last_ndep with val 2000 CLM adding use_case 2000_control defaults for var use_case_desc with val Conditions to simulate 2000 land-use CICE configure done. CESM BUILDNML SCRIPT HAS FINISHED SUCCESSFULLY-------------------------------------------------------------------------------------------------------------------------------------------------- CESM PRESTAGE SCRIPT STARTING - Case input data directory, DIN_LOC_ROOT, is /home/fliu/cesm1_2_2/inputdata - Checking the existence of input datasets in DIN_LOC_ROOT CESM PRESTAGE SCRIPT HAS FINISHED SUCCESSFULLY-------------------------------------------------------------------------Mon Feb 23 14:24:51 MST 2015 -- CSM EXECUTION BEGINS HEREMon Feb 23 14:46:16 MST 2015 -- CSM EXECUTION HAS FINISHED(seq_mct_drv): ===============       SUCCESSFUL TERMINATION OF CPL7-CCSM ===============Archiving cesm output to /home/fliu/cesm1_2_2/archive/CAM_chem.MAG.test01Calling the short-term archiving script st_archive.sh
st_archive.sh: start of short-term archivingmv: cannot stat `/home/fliu/cesm1_2_2/archive/CAM_chem.MAG.test01/*': No such file or directoryst_archive.sh: restart files from end of run will be saved,                interim restart files will be deletedst_archive.sh: short-term archiving completed successfully/home/fliu/cesm1_2_2/work/CAM_chem.MAG.test01/run/Tools/ccsm_getenv: No such file or directory. gzip: timing/ccsm_timing_stats.150223-142421: No such file or directory 
 
B

bianqy@tea_ac_cn

New Member
Hi Feng,I also met the same problem as you./home/fliu/cesm1_2_2/work/CAM_chem.MAG.test01/run/Tools/ccsm_getenv: No such file or directory.gzip: timing/ccsm_timing_stats.150223-142421: No such file or directoryHave you fixed it? How?Thanks!----Qingyun 
 
B

bianqy@tea_ac_cn

New Member
We thought,/home/fliu/cesm1_2_2/work/CAM_chem.MAG.test01/run/Tools/ccsm_getenv: No such file or directory.gzip: timing/ccsm_timing_stats.150223-142421: No such file or directory,these were errors!But actually the run succeeded. I don't understand why these messages appear.Thanks!
 
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