pio_support::pio_die:: myrank= -1 : ERROR: nf_mod.F90: 730 : NetCDF: Variable not found

[Yuan Sun]

Hi all,

I am creating a new stream module in CLMU with CESM2.1.3.

When I ran ./case.submit, there was an error in reading stream data. I attached the cesm.log and lnd.log.

In the end of cesm log, the error is
[0] pio_support::pio_die:: myrank= -1 : ERROR: nf_mod.F90: 730 : NetCDF: Variable not found
[0] application called MPI_Abort(MPI_COMM_WORLD, 1) - process 0

In the end of lnd.log,:
(shr_dmodel_readstrm) open : /home/yuansun/projects/cesm/inputdata/lnd/clm2/urbandata/CLM50_DynUrbanAlbedo_YuanSun_2023_0.9x1.25_simyr1849-2106_c20231005.nc
(shr_dmodel_readstrm) file lb: /home/yuansun/projects/cesm/inputdata/lnd/clm2/urbandata/CLM50_DynUrbanAlbedo_YuanSun_2023_0.9x1.25_simyr1849-2106_c20231005.nc 155


I read the nf_mod.F90 and the 730 line is : call check_netcdf(File, ierr,__PIO_FILE__,__LINE__). Then I guessed there might be a PIO_noerr.

I am confused about what is wrong and uncertain if it is an input data issue (nc file is already in classic format) or a module code issue. Also I do not know what '155' mean.

Thank you for taking an insight and offering any comments.

Best,
Yuan

 

[Yuan Sun]

Log as below, please.

 

[oleson]

155 is the time slice in the file it is trying to read.
I think it is failing because the number of characters for stream_var_name is one less than required:

character(15), private :: stream_var_name(isturb_MIN:isturb_MAX)

I think it is supposed to find dyn_alb_roof_TBD but is finding dyn_alb_roof_TB because you've specified 15 characters instead of 16.

 

[Yuan Sun]

Dear Keith,

Thank you for your suggestions. After I modified this mistake I made, the './case.submit' ran as expected.

the lnd log show the code works:
(shr_dmodel_readstrm) open : /home/yuansun/projects/cesm/inputdata/lnd/clm2/urbandata/CLM50_DynUrbanAlbedo_YuanSun_2023_0.9x1.25_simyr1849-2106_c20231005.nc
(shr_dmodel_readstrm) file lb: /home/yuansun/projects/cesm/inputdata/lnd/clm2/urbandata/CLM50_DynUrbanAlbedo_YuanSun_2023_0.9x1.25_simyr1849-2106_c20231005.nc 155
(shr_dmodel_readstrm) file ub: /home/yuansun/projects/cesm/inputdata/lnd/clm2/urbandata/CLM50_DynUrbanAlbedo_YuanSun_2023_0.9x1.25_simyr1849-2106_c20231005.nc 156

Thanks again.

Best,
Yuan

 

[xiaoxiaokuishu]

155 is the time slice in the file it is trying to read.
I think it is failing because the number of characters for stream_var_name is one less than required:

character(15), private :: stream_var_name(isturb_MIN:isturb_MAX)

I think it is supposed to find dyn_alb_roof_TBD but is finding dyn_alb_roof_TB because you've specified 15 characters instead of 16.

Hi, Oleson,
I also has the similar error (from cesm.log), but the error end at atm.log,
Addtional information, I use single-point simulation, the surf/domain/datm from CTSM5.1, but I use CLM5 to simulate,
I did not know is the compatible issues.

Best

 

[slevis]

I also has the similar error (from cesm.log), but the error end at atm.log,
Addtional information, I use single-point simulation, the surf/domain/datm from CTSM5.1, but I use CLM5 to simulate,
I did not know is the compatible issues.

Since the error appears in the atm.log file, I suspect that you used custom datm input files instead of the default ones. In that case, you may be able to isolate the problem by comparing the custom file last read when the simulation stopped versus one of the model's default ones.

 

[xiaoxiaokuishu]

Since the error appears in the atm.log file, I suspect that you used custom datm input files instead of the default ones. In that case, you may be able to isolate the problem by comparing the custom file last read when the simulation stopped versus one of the model's default ones.

Yes, you are correct, but I use GSWP dataset, but it is strange my stream file has ZBOT var,
but I check the Precip, Solr and TPHL, I did not find any ZBOT var, so I delete the ZBOT from
my stream files, then the model works....