Porting CESM 1.2.0 to Gordon@SDSC and Vesta@ANL

[hellyj@ucsd_edu]

Hi Jim.I'm most of the way along in porting CESM 1.2.0 to Gordon at SDSC and am trying to run ERS.f19_g16.X.gordon_intel.t01.test via ERS.f19_g16.X.gordon_intel.t01.submit.  Gordon uses qsub.  The job seems to submit ok but the output is confusing and I'm a bit stuck trying to figure out what's wrong.  Seems like the environment's not right but I don't know what to expect and can't figure out where 'templar' is so can't debug the *.submit script very effectively.Also, when I look at the *.run script (for some insight), I notice that the test about 'cesm.log' seems to actually be 'ccsm.log'.  I don't know if this is a bug or I'm misunderstanding something.Any pointers as to what might be wrong are most welcome.Thanks.J.=========================================== standard out ===========================ERS.f19_g16.X.gordon_intel.t01.test.o772390-------------------------------------------------------------------------
CESM BUILDNML SCRIPT STARTING
- To prestage restarts, untar a restart.tar file into /oasis/scratch/hellyj/spcam_testcase/hellyj/ERS.f19_g16.X.gordon_intel.t01/run
infile is /home/hellyj/src/cesm1_2_0/scripts/ERS.f19_g16.X.gordon_intel.t01/Buildconf/cplconf/cesm_namelist
CESM BUILDNML SCRIPT HAS FINISHED SUCCESSFULLY
-------------------------------------------------------------------------
-------------------------------------------------------------------------
CESM PRESTAGE SCRIPT STARTING
- Case input data directory, DIN_LOC_ROOT, is /oasis/scratch/hellyj/spcam_testcase/inputdata
- Checking the existence of input datasets in DIN_LOC_ROOT
CESM PRESTAGE SCRIPT HAS FINISHED SUCCESSFULLY
-------------------------------------------------------------------------
Mon Jun 17 20:41:01 PDT 2013 -- CSM EXECUTION BEGINS HERE
Mon Jun 17 20:41:11 PDT 2013 -- CSM EXECUTION HAS FINISHED
Model did not complete - no cesm.log file present - exiting
Nodes: gcn-13-51=========================================== error output ===========================ERS.f19_g16.X.gordon_intel.t01.test.e772390ls: No match.
gunzip: No match.
ls: No match.
ls: No match.
mv: missing destination file operand after `.base'
Try `mv --help' for more information.
if: Missing file name.

 

[hellyj@ucsd_edu]

So, I found this in another *.submit log.  From earlier responses you said this was due to submission from the command-line but that's not the case here since this was put in via *.submit.  Must be something wrong with the batch submission? [hellyj@gordon-ln2 ERS.f19_g16.X.gordon_intel.t01]$ more /oasis/scratch/hellyj/spcam_testcase/hellyj/ERS.f19_g16.X.gordon_intel.t01/run/ccsm.log.130618-092708mpirun.lsf: Command not found. 

 

[hellyj@ucsd_edu]

I may have found a path to debugging.  Seems like the mkbatch file is wrong.

 

[hellyj@ucsd_edu]

So.  I corrected the mkbatch file so no more errors from the batch submission but I still can't get past this...===========================================Warning: no access to tty (Bad file descriptor).Thus no job control in this shell.------------------------------------------------------------------------- CESM BUILDNML SCRIPT STARTING - To prestage restarts, untar a restart.tar file into /oasis/scratch/hellyj/spcam_testcase/hellyj/ERS.f19_g16.X.gordon_intel.t01/run infile is /home/hellyj/src/cesm1_2_0/scripts/ERS.f19_g16.X.gordon_intel.t01/Buildconf/cplconf/cesm_namelist CESM BUILDNML SCRIPT HAS FINISHED SUCCESSFULLY-------------------------------------------------------------------------------------------------------------------------------------------------- CESM PRESTAGE SCRIPT STARTING - Case input data directory, DIN_LOC_ROOT, is /oasis/scratch/hellyj/spcam_testcase/inputdata - Checking the existence of input datasets in DIN_LOC_ROOT CESM PRESTAGE SCRIPT HAS FINISHED SUCCESSFULLY-------------------------------------------------------------------------Tue Jun 18 09:54:58 PDT 2013 -- CSM EXECUTION BEGINS HERETue Jun 18 09:54:58 PDT 2013 -- CSM EXECUTION HAS FINISHEDls: No match.Model did not complete - no cesm.log file present - exitinggunzip: No match.ls: No match.ls: No match.mv: missing destination file operand after `.base'Try `mv --help' for more information.if: Missing file name.Nodes:        gcn-5-74 gcn-5-76 

 

[jedwards]

The fact that there is no cesm log present makes me think that you should try a very simple program like this one from the cesm users manual if you cannot run it successfully please talk with your system administration staff.

 

[jedwards]

After rereading your message - is there a ccsm.log file?   If so what is in it?   In the mkbatch.system script change ccsm.log to cesm.log.