prealpha test run fails

[pradalma]

Hi

I am trying to port CESM2 to a cluster at Johns Hopkins.
Here is the error message I get when trying to run the prealpha case as listed in the documentation to verify the porting.


Finished SHAREDLIB_BUILD for test ERS_D.f09_g17.B1850.rf1_gnu.allactive-defaultio in 62.642949 seconds (FAIL). [COMPLETED 4 of 64]
Case dir: /home/mpradal1/scr16_agnanad1/cesm/OUTPUT/ERS_D.f09_g17.B1850.rf1_gnu.allactive-defaultio.20220616_114918_fy4ty9
Errors were:
Building test for ERS in directory /scratch16/agnanad1/cesm/OUTPUT/ERS_D.f09_g17.B1850.rf1_gnu.allactive-defaultio.20220616_114918_fy4ty9
File not found: grid_file = "/home/mpradal1/scr16_agnanad1/cesm/cesm_input_datasets//ocn/pop/gx1v7/grid/horiz_grid_20010402.ieeer8", will attempt to download in check_input_data phase
File not found: kmt_file = "/home/mpradal1/scr16_agnanad1/cesm/cesm_input_datasets//ocn/pop/gx1v7/grid/topography_20161215.ieeei4", will attempt to download in check_input_data phase
File not found: frivinp_rtm = "/home/mpradal1/scr16_agnanad1/cesm/cesm_input_datasets//rof/mosart/MOSART_routing_Global_0.5x0.5_c170601.nc", will attempt to download in check_input_data phase
File not found: prestage_wind = "/home/mpradal1/scr16_agnanad1/cesm/cesm_input_datasets//wav/ww3/core2_G4_wns_30min_20000601_to_05.nc", will attempt to download in check_input_data phase
File not found: prestage_mod_def = "/home/mpradal1/scr16_agnanad1/cesm/cesm_input_datasets//wav/ww3/G4L1.mod_def.ww3.121031", will attempt to download in check_input_data phase
File not found: initfile = "/home/mpradal1/scr16_agnanad1/cesm/cesm_input_datasets//wav/ww3/restart.ww3.init.seed", will attempt to download in check_input_data phase
File not found: atm2ocn_fmapname = "cpl/gridmaps/fv0.9x1.25/map_fv0.9x1.25_TO_gx1v7_aave.151008.nc", will attempt to download in check_input_data phase
File not found: atm2ocn_smapname = "cpl/gridmaps/fv0.9x1.25/map_fv0.9x1.25_TO_gx1v7_blin.151008.nc", will attempt to download in check_input_data phase

 

[erik]

There are several input files that you are missing that you need to download. To do that first run

./check_input_data

in your case and it will say something similar to above. Then to download

./check_input_data --download

There are also options to the script that you can use the --help option to learn how to use it.

This also would be talked about in general user documentation about how to run CESM.

 

[pradalma]

Thanks for your answer

I am now attempting to reproduce a historic run
the build fails with these errors
dgmres.f:(.text+0x101b): undefined reference to `dscal_'

dgmres.f:(.text+0x1201): undefined reference to `dnrm2_'

dgmres.f:(.text+0x145e): undefined reference to `dcopy_'

dgmres.f:(.text+0x152d): undefined reference to `dnrm2_'

dgmres.f:(.text+0x16b7): undefined reference to `dscal_'

dgmres.f:(.text+0x186d): undefined reference to `dcopy_'

dgmres.f:(.text+0x193f): undefined reference to `dcopy_'

dgmres.f:(.text+0x1a18): undefined reference to `dnrm2_'

dgmres.f:(.text+0x1bc3): undefined reference to `dscal_'

dgmres.f:(.text+0x1c19): undefined reference to `dcopy_'

dgmres.f:(.text+0x1fb3): undefined reference to `daxpy_'

dgmres.f:(.text+0x2092): undefined reference to `dcopy_'

dgmres.f:(.text+0x23e7): undefined reference to `dcopy_'

dgmres.f:(.text+0x24cf): undefined reference to `dnrm2_'

dgmres.f:(.text+0x2599): undefined reference to `dcopy_'

Component cesm exe build complete with 3 warnings
ERROR: BUILD FAIL: buildexe failed,

 

[erik]

OK, so it's failing on the link step. And dgmres.f has some external subroutine/function calls that aren't satisfied. I'm not quite sure what those calls refer to. But, I think some of them might be LAPACK subroutines. You might need to add capability to your build so that LAPACK is linked in. This often is an extra step and will vary depending on the compiler.

I would suggest finding the dgmres.f file in the source code and look for the calls referenced and see if there is some indication on what they are. I'd also look into the CESM build about how linking with LAPACK is done.