cfz1885@gmail_com
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I'm intend to use Intel's OpenMP to accelerate CESM 1.2.2. But it occour a segmentation fault error with log below:(seq_comm_setcomm) initialize ID ( 1 GLOBAL ) pelist = 0 59 1 ( npes = 60) ( nthreads = 1)(seq_comm_setcomm) initialize ID ( 2 CPL ) pelist = 0 11 1 ( npes = 12) ( nthreads = 4)(seq_comm_setcomm) initialize ID ( 17 ATM ) pelist = 0 11 1 ( npes = 12) ( nthreads = 4)(seq_comm_joincomm) initialize ID ( 18 CPLATM ) join IDs = 2 17 ( npes = 12) ( nthreads = 4)(seq_comm_jcommarr) initialize ID ( 3 ALLATMID ) join multiple comp IDs ( npes = 12) ( nthreads = 4)(seq_comm_joincomm) initialize ID ( 10 CPLALLATMID ) join IDs = 2 3 ( npes = 12) ( nthreads = 4)(seq_comm_setcomm) initialize ID ( 19 LND ) pelist = 0 11 1 ( npes = 12) ( nthreads = 4)(seq_comm_joincomm) initialize ID ( 20 CPLLND ) join IDs = 2 19 ( npes = 12) ( nthreads = 4)(seq_comm_jcommarr) initialize ID ( 4 ALLLNDID ) join multiple comp IDs ( npes = 12) ( nthreads = 4)(seq_comm_joincomm) initialize ID ( 11 CPLALLLNDID ) join IDs = 2 4 ( npes = 12) ( nthreads = 4)(seq_comm_setcomm) initialize ID ( 21 OCN ) pelist = 48 59 1 ( npes = 12) ( nthreads = 4)(seq_comm_joincomm) initialize ID ( 22 CPLOCN ) join IDs = 2 21 ( npes = 24) ( nthreads = 4)(seq_comm_jcommarr) initialize ID ( 5 ALLOCNID ) join multiple comp IDs ( npes = 12) ( nthreads = 4)(seq_comm_joincomm) initialize ID ( 12 CPLALLOCNID ) join IDs = 2 5 ( npes = 24) ( nthreads = 4)(seq_comm_setcomm) initialize ID ( 23 ICE ) pelist = 0 11 1 ( npes = 12) ( nthreads = 4)(seq_comm_joincomm) initialize ID ( 24 CPLICE ) join IDs = 2 23 ( npes = 12) ( nthreads = 4)(seq_comm_jcommarr) initialize ID ( 6 ALLICEID ) join multiple comp IDs ( npes = 12) ( nthreads = 4)(seq_comm_joincomm) initialize ID ( 13 CPLALLICEID ) join IDs = 2 6 ( npes = 12) ( nthreads = 4)(seq_comm_setcomm) initialize ID ( 25 GLC ) pelist = 0 11 1 ( npes = 12) ( nthreads = 4)(seq_comm_joincomm) initialize ID ( 26 CPLGLC ) join IDs = 2 25 ( npes = 12) ( nthreads = 4)(seq_comm_jcommarr) initialize ID ( 7 ALLGLCID ) join multiple comp IDs ( npes = 12) ( nthreads = 4)(seq_comm_joincomm) initialize ID ( 14 CPLALLGLCID ) join IDs = 2 7 ( npes = 12) ( nthreads = 4)(seq_comm_setcomm) initialize ID ( 27 ROF ) pelist = 0 11 1 ( npes = 12) ( nthreads = 4)(seq_comm_joincomm) initialize ID ( 28 CPLROF ) join IDs = 2 27 ( npes = 12) ( nthreads = 4)(seq_comm_jcommarr) initialize ID ( 8 ALLROFID ) join multiple comp IDs ( npes = 12) ( nthreads = 4)(seq_comm_joincomm) initialize ID ( 15 CPLALLROFID ) join IDs = 2 8 ( npes = 12) ( nthreads = 4)(seq_comm_setcomm) initialize ID ( 29 WAV ) pelist = 0 11 1 ( npes = 12) ( nthreads = 4)(seq_comm_joincomm) initialize ID ( 30 CPLWAV ) join IDs = 2 29 ( npes = 12) ( nthreads = 4)(seq_comm_jcommarr) initialize ID ( 9 ALLWAVID ) join multiple comp IDs ( npes = 12) ( nthreads = 4)(seq_comm_joincomm) initialize ID ( 16 CPLALLWAVID ) join IDs = 2 9 ( npes = 12) ( nthreads = 4)(seq_comm_printcomms) 1 0 60 1 GLOBAL:(seq_comm_printcomms) 2 0 12 4 CPL:(seq_comm_printcomms) 3 0 12 4 ALLATMID:(seq_comm_printcomms) 4 0 12 4 ALLLNDID:(seq_comm_printcomms) 5 48 -1 1 ALLOCNID:(seq_comm_printcomms) 6 0 12 4 ALLICEID:(seq_comm_printcomms) 7 0 12 4 ALLGLCID:(seq_comm_printcomms) 8 0 12 4 ALLROFID:(seq_comm_printcomms) 9 0 12 4 ALLWAVID:(seq_comm_printcomms) 10 0 12 4 CPLALLATMID:(seq_comm_printcomms) 11 0 12 4 CPLALLLNDID:(seq_comm_printcomms) 12 0 24 4 CPLALLOCNID:(seq_comm_printcomms) 13 0 12 4 CPLALLICEID:(seq_comm_printcomms) 14 0 12 4 CPLALLGLCID:(seq_comm_printcomms) 15 0 12 4 CPLALLROFID:(seq_comm_printcomms) 16 0 12 4 CPLALLWAVID:(seq_comm_printcomms) 17 0 12 4 ATM:(seq_comm_printcomms) 18 0 12 4 CPLATM:(seq_comm_printcomms) 19 0 12 4 LND:(seq_comm_printcomms) 20 0 12 4 CPLLND:(seq_comm_printcomms) 21 48 -1 1 OCN:(seq_comm_printcomms) 22 0 24 4 CPLOCN:(seq_comm_printcomms) 23 0 12 4 ICE:(seq_comm_printcomms) 24 0 12 4 CPLICE:(seq_comm_printcomms) 25 0 12 4 GLC:(seq_comm_printcomms) 26 0 12 4 CPLGLC:(seq_comm_printcomms) 27 0 12 4 ROF:(seq_comm_printcomms) 28 0 12 4 CPLROF:(seq_comm_printcomms) 29 0 12 4 WAV:(seq_comm_printcomms) 30 0 12 4 CPLWAV: OCN : pio_numiotasks = 3 OCN : pio_stride = 4 OCN : pio_root = 0 OCN : pio_iotype = 6 OCN : iosys -2080374780 -1006632952 (t_initf) Read in prof_inparm namelist from: drv_in8 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 965.108 MB memory alloc in MB is 8.008 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1021.018 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1053.85seq_flds_mod: read seq_cplflds_inparm namelist from: drv_in8 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1023.508 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1026.008 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00seq_flds_mod: read seq_cplflds_userspec namelist from: drv_inMemory block size conversion in bytes is 1020.028 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1031.058 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1021.518 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1026.008 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1020.028 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1022.008 MB memory alloc in MB is 8.008 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1024.00Memory block size conversion in bytes is 1018.038 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1027.018 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1021.018 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1028.528 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1024.008 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1020.518 MB memory alloc in MB is 8.008 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.008 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 965.54Memory block size conversion in bytes is 1029.028 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1028.528 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1019.528 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 968.668 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1024.508 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1021.518 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 994.858 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1020.028 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1020.028 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1025.508 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1020.028 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1018.038 MB memory alloc in MB is 8.008 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1024.008 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1022.508 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1020.518 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 994.858 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1023.508 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1022.508 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1020.518 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1025.508 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 969.118 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1020.518 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1021.518 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1026.518 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1030.548 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1025.508 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1020.518 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1020.028 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1021.018 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1032.068 MB memory alloc in MB is 8.008 MB memory dealloc in MB is -0.27Memory block size conversion in bytes is 1053.858 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 997.698 MB memory alloc in MB is 8.008 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1024.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 969.568 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1035.128 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 994.858 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1027.018 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1027.018 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1021.518 MB memory alloc in MB is 8.008 MB memory dealloc in MB is 0.00Memory block size conversion in bytes is 1022.00seq_flds_mod: seq_flds_a2x_states= Sa_z:Sa_u:Sa_v:Sa_tbot:Sa_ptem:Sa_shum:Sa_pbot:Sa_dens:Sa_pslv:Sa_co2prog:Sa_co2diagseq_flds_mod: seq_flds_a2x_fluxes= Faxa_rainc:Faxa_rainl:Faxa_snowc:Faxa_snowl:Faxa_lwdn:Faxa_swndr:Faxa_swvdr:Faxa_swndf:Faxa_swvdf:Faxa_swnet:Faxa_bcphidry:Faxa_bcphodry:Faxa_bcphiwet:Faxa_ocphidry:Faxa_ocphodry:Faxa_ocphiwet:Faxa_dstwet1:Faxa_dstwet2:Faxa_dstwet3:Faxa_dstwet4:Faxa_dstdry1:Faxa_dstdry2:Faxa_dstdry3:Faxa_dstdry4seq_flds_mod: seq_flds_x2a_states= Sf_lfrac:Sf_ifrac:Sf_ofrac:Sx_avsdr:Sx_anidr:Sx_avsdf:Sx_anidf:Sx_tref:Sx_qref:So_t:Sx_t:Sl_fv:Sl_ram1:Sl_snowh:Si_snowh:So_ssq:So_re:Sx_u10:So_ustarseq_flds_mod: seq_flds_x2a_fluxes= Faxx_taux:Faxx_tauy:Faxx_lat:Faxx_sen:Faxx_lwup:Faxx_evap:Fall_flxdst1:Fall_flxdst2:Fall_flxdst3:Fall_flxdst4seq_flds_mod: seq_flds_l2x_states= Sl_avsdr:Sl_anidr:Sl_avsdf:Sl_anidf:Sl_tref:Sl_qref:Sl_t:Sl_fv:Sl_ram1:Sl_snowh:Sl_u10seq_flds_mod: seq_flds_l2x_fluxes= Fall_swnet:Fall_taux:Fall_tauy:Fall_lat:Fall_sen:Fall_lwup:Fall_evap:Fall_flxdst1:Fall_flxdst2:Fall_flxdst3:Fall_flxdst4:Flrl_rofliq:Flrl_roficeseq_flds_mod: seq_flds_x2l_states= Sa_z:Sa_u:Sa_v:Sa_tbot:Sa_ptem:Sa_shum:Sa_pbot:Slrr_volr:Sa_co2prog:Sa_co2diagseq_flds_mod: seq_flds_x2l_fluxes= Faxa_rainc:Faxa_rainl:Faxa_snowc:Faxa_snowl:Faxa_lwdn:Faxa_swndr:Faxa_swvdr:Faxa_swndf:Faxa_swvdf:Faxa_bcphidry:Faxa_bcphodry:Faxa_bcphiwet:Faxa_ocphidry:Faxa_ocphodry:Faxa_ocphiwet:Faxa_dstwet1:Faxa_dstwet2:Faxa_dstwet3:Faxa_dstwet4:Faxa_dstdry1:Faxa_dstdry2:Faxa_dstdry3:Faxa_dstdry4:Flrr_floodseq_flds_mod: seq_flds_i2x_states= Si_avsdr:Si_anidr:Si_avsdf:Si_anidf:Si_tref:Si_qref:Si_t:Si_snowh:Si_u10:Si_ifracseq_flds_mod: seq_flds_i2x_fluxes= Faii_swnet:Fioi_swpen:Faii_taux:Fioi_taux:Faii_tauy:Fioi_tauy:Faii_lat:Faii_sen:Faii_lwup:Faii_evap:Fioi_melth:Fioi_meltw:Fioi_saltseq_flds_mod: seq_flds_x2i_states= Sa_z:Sa_u:Sa_v:Sa_tbot:Sa_ptem:Sa_shum:Sa_pbot:Sa_dens:So_t:So_s:So_u:So_v:So_dhdx:So_dhdyseq_flds_mod: seq_flds_x2i_fluxes= Faxa_rain:Faxa_snow:Faxa_lwdn:Faxa_swndr:Faxa_swvdr:Faxa_swndf:Faxa_swvdf:Faxa_bcphidry:Faxa_bcphodry:Faxa_bcphiwet:Faxa_ocphidry:Faxa_ocphodry:Faxa_ocphiwet:Faxa_dstwet1:Faxa_dstwet2:Faxa_dstwet3:Faxa_dstwet4:Faxa_dstdry1:Faxa_dstdry2:Faxa_dstdry3:Faxa_dstdry4:Fioo_qseq_flds_mod: seq_flds_o2x_states= So_t:So_s:So_u:So_v:So_dhdx:So_dhdy:So_bldepthseq_flds_mod: seq_flds_o2x_fluxes= Fioo_qseq_flds_mod: seq_flds_x2o_states= Sa_pslv:So_duu10n:Si_ifrac:Sw_lamult:Sw_ustokes:Sw_vstokes:Sw_hstokesseq_flds_mod: seq_flds_x2o_fluxes= Faxa_rain:Faxa_snow:Faxa_prec:Faxa_lwdn:Foxx_swnet:Faxa_bcphidry:Faxa_bcphodry:Faxa_bcphiwet:Faxa_ocphidry:Faxa_ocphodry:Faxa_ocphiwet:Faxa_dstwet1:Faxa_dstwet2:Faxa_dstwet3:Faxa_dstwet4:Faxa_dstdry1:Faxa_dstdry2:Faxa_dstdry3:Faxa_dstdry4:Foxx_taux:Foxx_tauy:Foxx_lat:Foxx_sen:Foxx_lwup:Foxx_evap:Fioi_melth:Fioi_meltw:Fioi_salt:Forr_roff:Forr_ioffseq_flds_mod: seq_flds_s2x_states=
seq_flds_mod: seq_flds_s2x_fluxes=
seq_flds_mod: seq_flds_x2s_states=
seq_flds_mod: seq_flds_x2s_fluxes=
seq_flds_mod: seq_flds_g2x_states=
seq_flds_mod: seq_flds_g2x_fluxes=
seq_flds_mod: seq_flds_x2g_states=
seq_flds_mod: seq_flds_x2g_fluxes=
seq_flds_mod: seq_flds_xao_states= So_tref:So_qref:So_ssq:So_re:So_u10:So_duu10n:So_ustarseq_flds_mod: seq_flds_xao_albedo= So_avsdr:So_anidr:So_avsdf:So_anidfseq_flds_mod: seq_flds_r2x_states= Slrr_volrseq_flds_mod: seq_flds_r2x_fluxes= Forr_roff:Forr_ioff:Flrr_floodseq_flds_mod: seq_flds_x2r_states=
seq_flds_mod: seq_flds_x2r_fluxes= Flrl_rofliq:Flrl_roficeseq_flds_mod: seq_flds_w2x_states= Sw_lamult:Sw_ustokes:Sw_vstokes:Sw_hstokesseq_flds_mod: seq_flds_w2x_fluxes=
seq_flds_mod: seq_flds_x2w_states= Sa_u:Sa_v:Sa_tbot:Si_ifrac:So_t:So_u:So_v:So_bldepthseq_flds_mod: seq_flds_x2w_fluxes=
12 pes participating in computation ----------------------------------- TASK# NAME 0 cu01 1 cu01 2 cu01 3 cu01 4 cu01 5 cu01 6 cu01 7 cu01 8 cu01 9 cu01 10 cu01 11 cu01 Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/atm/cam/inic/fv/cami_1 980-01-01_0.47x0.63_L26_c071226.nc 65536 Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/atm/cam/topo/USGS_gtop o30_0.47x0.63_remap_c061106.nc 131072 NetCDF: Invalid dimension ID or name NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/atm/cam/physprops/sulf ate_camrt_c080918.nc 196608 Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/atm/cam/physprops/dust 1_camrt_c080918.nc 196608 Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/atm/cam/physprops/dust 2_camrt_c080918.nc 196608 Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/atm/cam/physprops/dust 3_camrt_c080918.nc 196608 Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/atm/cam/physprops/dust 4_camrt_c080918.nc 196608 Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/atm/cam/physprops/bcph o_camrt_c080918.nc 196608 Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/atm/cam/physprops/bcph i_camrt_c080918.nc 196608 Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/atm/cam/physprops/ocph o_camrt_c080918.nc 196608 Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/atm/cam/physprops/ocph i_camrt_c080918.nc 196608 Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/atm/cam/physprops/ssam _camrt_c080918.nc 196608 Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/atm/cam/physprops/sscm _camrt_c080918.nc 196608 Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/atm/cam/ozone/ozone_1. 9x2.5_L26_1850clim_c091112.nc 196608 NetCDF: Invalid dimension ID or name Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/atm/cam/chem/trop_moza rt_aero/aero/aero_1.9x2.5_L26_1850clim_c091112.nc 262144 NetCDF: Invalid dimension ID or name Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/atm/cam/chem/trop_moza rt_aero/aero/aerosoldep_monthly_1850_mean_1.9x2.5_c090421.nc 327680 NetCDF: Variable not found NetCDF: Variable not found NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/atm/cam/rad/abs_ems_fa ctors_fastvx.c030508.nc 393216 Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/atm/cam/chem/trop_moza rt/ub/clim_p_trop.nc 393216
12 pes participating in computation for CLM
-----------------------------------
NODE# NAME( 0) cu01( 1) cu01( 2) cu01( 3) cu01( 4) cu01( 5) cu01( 6) cu01( 7) cu01( 8) cu01( 9) cu01( 10) cu01( 11) cu01 Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/share/domains/domain.l nd.fv0.47x0.63_gx1v6.090407.nc 393216 NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Variable not found Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/share/domains/domain.l nd.fv0.47x0.63_gx1v6.090407.nc 393216 NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/lnd/clm2/surfdata/surf data_0.47x0.63_simyr1850_c100826.nc 393216 NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/lnd/clm2/pftdata/pft-p hysiology.clm40.c130424.nc 393216 Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/lnd/clm2/surfdata/surf data_0.47x0.63_simyr1850_c100826.nc 393216 NetCDF: Variable not found NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name proc= 1 beg gridcell= 6675 end gridcell= 13348 total gridcells per proc= 6674 proc= 1 beg landunit= 8564 end landunit= 17078 total landunits per proc= 8515 proc= 1 beg column = 13335 end column = 26561 total columns per proc = 13227 proc= 1 beg pft = 85943 end pft = 171697 total pfts per proc = 85755 proc= 1 lnd ngseg = 2607 lnd nlseg = 215 proc= 1 gce ngseg = 960 gce nlseg = 80 proc= 1 lun ngseg = 960 lun nlseg = 80 proc= 1 col ngseg = 960 col nlseg = 80 proc= 1 pft ngseg = 960 pft nlseg = 80 proc= 1 nclumps = 4 proc= 1 clump no = 1 clump id= 2 beg gridcell= 6675 end gridcell= 8342 total gridcells per clump= 1668 proc= 1 clump no = 1 clump id= 2 beg landunit= 8564 end landunit= 10648 total landunits per clump = 2085 proc= 1 clump no = 1 clump id= 2 beg column = 13335 end column = 16484 total columns per clump = 3150 proc= 1 clump no = 1 clump id= 2 beg pft = 85943 end pft = 107156 total pfts per clump = 21214 proc= 5 beg gridcell= 33371 end gridcell= 40044 total gridcells per proc= 6674 proc= 5 beg landunit= 42979 end landunit= 51445 total landunits per proc= 8467 proc= 5 beg column = 67064 end column = 80023 total columns per proc = 12960 proc= 5 beg pft = 428728 end pft = 515591 total pfts per proc = 86864 proc= 5 lnd ngseg = 2607 lnd nlseg = 215 proc= 5 gce ngseg = 960 gce nlseg = 80 proc= 5 lun ngseg = 960 lun nlseg = 80 proc= 5 col ngseg = 960 col nlseg = 80 proc= 5 pft ngseg = 960 pft nlseg = 80 proc= 5 nclumps = 4 proc= 5 clump no = 1 clump id= 6 beg gridcell= 33371 end gridcell= 35038 total gridcells per clump= 1668 proc= 5 clump no = 1 clump id= 6 beg landunit= 42979 end landunit= 45049 total landunits per clump = 2071 proc= 5 clump no = 1 clump id= 6 beg column = 67064 end column = 70248 total columns per clump = 3185 proc= 5 clump no = 1 clump id= 6 beg pft = 428728 end pft = 450168 total pfts per clump = 21441 proc= 10 beg gridcell= 66741 end gridcell= 73414 total gridcells per proc= 6674 proc= 10 beg landunit= 85921 end landunit= 94511 total landunits per proc= 8591 proc= 10 beg column = 133534 end column = 146903 total columns per proc = 13370 proc= 10 beg pft = 860702 end pft = 947447 total pfts per proc = 86746 proc= 10 lnd ngseg = 2607 lnd nlseg = 225 proc= 10 gce ngseg = 960 gce nlseg = 80 proc= 10 lun ngseg = 960 lun nlseg = 80 proc= 10 col ngseg = 960 col nlseg = 80 proc= 10 pft ngseg = 960 pft nlseg = 80 proc= 10 nclumps = 4 proc= 10 clump no = 1 clump id= 11 beg gridcell= 66741 end gridcell= 68408 total gridcells per clump= 1668 proc= 10 clump no = 1 clump id= 11 beg landunit= 85921 end landunit= 87997 total landunits per clump = 2077 proc= 10 clump no = 1 clump id= 11 beg column = 133534 end column = 136691 total columns per clump = 3158 proc= 10 clump no = 1 clump id= 11 beg pft = 860702 end pft = 882531 total pfts per clump = 21830 proc= 11 beg gridcell= 73415 end gridcell= 80086 total gridcells per proc= 6672 proc= 11 beg landunit= 94512 end landunit= 103130 total landunits per proc= 8619 proc= 11 beg column = 146904 end column = 160216 total columns per proc = 13313 proc= 11 beg pft = 947448 end pft = 1033160 total pfts per proc = 85713 proc= 11 lnd ngseg = 2607 lnd nlseg = 221 proc= 11 gce ngseg = 960 gce nlseg = 80 proc= 11 lun ngseg = 960 lun nlseg = 80 proc= 11 col ngseg = 960 col nlseg = 80 proc= 11 pft ngseg = 960 pft nlseg = 80 proc= 11 nclumps = 4 proc= 11 clump no = 1 clump id= 12 beg gridcell= 73415 end gridcell= 75082 total gridcells per clump= 1668 proc= 11 clump no = 1 clump id= 12 beg landunit= 94512 end landunit= 96700 total landunits per clump = 2189 proc= 11 clump no = 1 clump id= 12 beg column = 146904 end column = 150188 total columns per clump = 3285 proc= 11 clump no = 1 clump id= 12 beg pft = 947448 end pft = 968316 total pfts per clump = 20869 Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/lnd/clm2/surfdata/surf data_0.47x0.63_simyr1850_c100826.nc 393216 Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/lnd/clm2/surfdata/surf data_0.47x0.63_simyr1850_c100826.nc 393216 NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/lnd/clm2/snicardata/sn icar_optics_5bnd_c090915.nc 458752 Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/lnd/clm2/snicardata/sn icar_drdt_bst_fit_60_c070416.nc 458752 Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/lnd/clm2/initdata/clmi .BCN.0182-01-01_0.47x0.63_g1v6_simyr1850_c120324.nc 458752 NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found(shr_stream_set) size of filename = 1(shr_stream_set) size of filename = 1(shr_stream_set) filename = /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/lnd/clm2/ndepdata/fndep_clm_hist_simyr1849-2006_1.9x2.5_c100428.nc(shr_stream_set) filename = /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/lnd/clm2/ndepdata/fndep_clm_hist_simyr1849-2006_1.9x2.5_c100428.nc(shr_stream_set) size of filename = 1(shr_stream_set) filename = /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/lnd/clm2/ndepdata/fndep_clm_hist_simyr1849-2006_1.9x2.5_c100428.nc(shr_stream_set) size of filename = 1(shr_stream_set) filename = /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/lnd/clm2/ndepdata/fndep_clm_hist_simyr1849-2006_1.9x2.5_c100428.nc(shr_stream_set) size of filename = 1(shr_stream_set) filename = /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/lnd/clm2/ndepdata/fndep_clm_hist_simyr1849-2006_1.9x2.5_c100428.nc(shr_stream_set) size of filename = 1(shr_stream_set) filename = /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/lnd/clm2/ndepdata/fndep_clm_hist_simyr1849-2006_1.9x2.5_c100428.nc(shr_stream_set) size of filename = 1(shr_stream_set) filename = /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/lnd/clm2/ndepdata/fndep_clm_hist_simyr1849-2006_1.9x2.5_c100428.nc(shr_stream_set) size of filename = 1(shr_stream_set) filename = /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/lnd/clm2/ndepdata/fndep_clm_hist_simyr1849-2006_1.9x2.5_c100428.nc(shr_stream_set) size of filename = 1(shr_stream_set) filename = /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/lnd/clm2/ndepdata/fndep_clm_hist_simyr1849-2006_1.9x2.5_c100428.nc(shr_stream_set) size of filename = 1(shr_stream_set) filename = /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/lnd/clm2/ndepdata/fndep_clm_hist_simyr1849-2006_1.9x2.5_c100428.nc(shr_stream_set) size of filename = 1(shr_stream_set) filename = /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/lnd/clm2/ndepdata/fndep_clm_hist_simyr1849-2006_1.9x2.5_c100428.nc hist_htapes_build hist tape = 1 written with dov2xy= T hist_htapes_build hist tape = 1 written with dov2xy= T hist_htapes_build hist tape = 1 written with dov2xy= T hist_htapes_build hist tape = 1 written with dov2xy= T hist_htapes_build hist tape = 1 written with dov2xy= T hist_htapes_build hist tape = 1 written with dov2xy= T hist_htapes_build hist tape = 1 written with dov2xy= T hist_htapes_build hist tape = 1 written with dov2xy= T hist_htapes_build hist tape = 1 written with dov2xy= T hist_htapes_build hist tape = 1 written with dov2xy= T hist_htapes_build hist tape = 1 written with dov2xy= T Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/lnd/clm2/rtmdata/rdirc _0.5x0.5_simyr2000_slpmxvl_c120717.nc 458752 rtm decomp info proc = 1 begr = 21630 endr = 43258 numr = 21629 proc = 1 begrl= 12706 endrl= 25848 numrl= 13143 proc = 1 begro= 8925 endro= 17410 numro= 8486 rtm decomp info proc = 5 begr = 108267 endr = 129912 numr = 21646 proc = 5 begrl= 54999 endrl= 64635 numrl= 9637 proc = 5 begro= 53269 endro= 65277 numro= 12009 rtm decomp info proc = 10 begr = 216754 endr = 238382 numr = 21629 proc = 10 begrl= 79612 endrl= 82326 numrl= 2715 proc = 10 begro= 137143 endro= 156056 numro= 18914 rtm decomp info proc = 11 begr = 238383 endr = 259200 numr = 20818 proc = 11 begrl= 82327 endrl= 84511 numrl= 2185 proc = 11 begro= 156057 endro= 174689 numro= 18633 Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/rof/rtm/initdata/rtmi. I1850CRUCLM45BGC.0241-01-01.R05_simyr1850_c130515.nc 458752 Reading setup_nml Reading grid_nml Reading ice_nml Reading tracer_nmlCalcWorkPerBlock: Total blocks: 384 Ice blocks: 126 IceFree blocks: 229 Land blocks: 29MCT::m_Router::initp_: GSMap indices not increasing...Will correctMCT::m_Router::initp_: RGSMap indices not increasing...Will correctMCT::m_Router::initp_: RGSMap indices not increasing...Will correctMCT::m_Router::initp_: GSMap indices not increasing...Will correctMCT::m_Router::initp_: GSMap indices not increasing...Will correctMCT::m_Router::initp_: RGSMap indices not increasing...Will correctMCT::m_Router::initp_: RGSMap indices not increasing...Will correctMCT::m_Router::initp_: GSMap indices not increasing...Will correctMCT::m_Router::initp_: GSMap indices not increasing...Will correctMCT::m_Router::initp_: RGSMap indices not increasing...Will correctMCT::m_Router::initp_: RGSMap indices not increasing...Will correctMCT::m_Router::initp_: GSMap indices not increasing...Will correct(seq_domain_areafactinit) : min/max mdl2drv 0.964166830348515 1.03890667698306 areafact_o_OCN(seq_domain_areafactinit) : min/max drv2mdl 0.962550363911375 1.03716490603450 areafact_o_OCN
==================================================================================== BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES= PID 3237 RUNNING AT cu01= EXIT CODE: 11= CLEANING UP REMAINING PROCESSES= YOU CAN IGNORE THE BELOW CLEANUP MESSAGES===================================================================================YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Segmentation fault (signal 11)This typically refers to a problem with your application.Please see the FAQ page for debugging suggestionsAnd this is my env_mach_pes.xml :
My compiler is icc and ifort.mpi is mpich.Please help me to fix it.
seq_flds_mod: seq_flds_s2x_fluxes=
seq_flds_mod: seq_flds_x2s_states=
seq_flds_mod: seq_flds_x2s_fluxes=
seq_flds_mod: seq_flds_g2x_states=
seq_flds_mod: seq_flds_g2x_fluxes=
seq_flds_mod: seq_flds_x2g_states=
seq_flds_mod: seq_flds_x2g_fluxes=
seq_flds_mod: seq_flds_xao_states= So_tref:So_qref:So_ssq:So_re:So_u10:So_duu10n:So_ustarseq_flds_mod: seq_flds_xao_albedo= So_avsdr:So_anidr:So_avsdf:So_anidfseq_flds_mod: seq_flds_r2x_states= Slrr_volrseq_flds_mod: seq_flds_r2x_fluxes= Forr_roff:Forr_ioff:Flrr_floodseq_flds_mod: seq_flds_x2r_states=
seq_flds_mod: seq_flds_x2r_fluxes= Flrl_rofliq:Flrl_roficeseq_flds_mod: seq_flds_w2x_states= Sw_lamult:Sw_ustokes:Sw_vstokes:Sw_hstokesseq_flds_mod: seq_flds_w2x_fluxes=
seq_flds_mod: seq_flds_x2w_states= Sa_u:Sa_v:Sa_tbot:Si_ifrac:So_t:So_u:So_v:So_bldepthseq_flds_mod: seq_flds_x2w_fluxes=
12 pes participating in computation ----------------------------------- TASK# NAME 0 cu01 1 cu01 2 cu01 3 cu01 4 cu01 5 cu01 6 cu01 7 cu01 8 cu01 9 cu01 10 cu01 11 cu01 Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/atm/cam/inic/fv/cami_1 980-01-01_0.47x0.63_L26_c071226.nc 65536 Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/atm/cam/topo/USGS_gtop o30_0.47x0.63_remap_c061106.nc 131072 NetCDF: Invalid dimension ID or name NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/atm/cam/physprops/sulf ate_camrt_c080918.nc 196608 Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/atm/cam/physprops/dust 1_camrt_c080918.nc 196608 Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/atm/cam/physprops/dust 2_camrt_c080918.nc 196608 Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/atm/cam/physprops/dust 3_camrt_c080918.nc 196608 Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/atm/cam/physprops/dust 4_camrt_c080918.nc 196608 Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/atm/cam/physprops/bcph o_camrt_c080918.nc 196608 Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/atm/cam/physprops/bcph i_camrt_c080918.nc 196608 Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/atm/cam/physprops/ocph o_camrt_c080918.nc 196608 Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/atm/cam/physprops/ocph i_camrt_c080918.nc 196608 Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/atm/cam/physprops/ssam _camrt_c080918.nc 196608 Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/atm/cam/physprops/sscm _camrt_c080918.nc 196608 Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/atm/cam/ozone/ozone_1. 9x2.5_L26_1850clim_c091112.nc 196608 NetCDF: Invalid dimension ID or name Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/atm/cam/chem/trop_moza rt_aero/aero/aero_1.9x2.5_L26_1850clim_c091112.nc 262144 NetCDF: Invalid dimension ID or name Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/atm/cam/chem/trop_moza rt_aero/aero/aerosoldep_monthly_1850_mean_1.9x2.5_c090421.nc 327680 NetCDF: Variable not found NetCDF: Variable not found NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/atm/cam/rad/abs_ems_fa ctors_fastvx.c030508.nc 393216 Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/atm/cam/chem/trop_moza rt/ub/clim_p_trop.nc 393216
12 pes participating in computation for CLM
-----------------------------------
NODE# NAME( 0) cu01( 1) cu01( 2) cu01( 3) cu01( 4) cu01( 5) cu01( 6) cu01( 7) cu01( 8) cu01( 9) cu01( 10) cu01( 11) cu01 Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/share/domains/domain.l nd.fv0.47x0.63_gx1v6.090407.nc 393216 NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Variable not found Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/share/domains/domain.l nd.fv0.47x0.63_gx1v6.090407.nc 393216 NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/lnd/clm2/surfdata/surf data_0.47x0.63_simyr1850_c100826.nc 393216 NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/lnd/clm2/pftdata/pft-p hysiology.clm40.c130424.nc 393216 Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/lnd/clm2/surfdata/surf data_0.47x0.63_simyr1850_c100826.nc 393216 NetCDF: Variable not found NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name proc= 1 beg gridcell= 6675 end gridcell= 13348 total gridcells per proc= 6674 proc= 1 beg landunit= 8564 end landunit= 17078 total landunits per proc= 8515 proc= 1 beg column = 13335 end column = 26561 total columns per proc = 13227 proc= 1 beg pft = 85943 end pft = 171697 total pfts per proc = 85755 proc= 1 lnd ngseg = 2607 lnd nlseg = 215 proc= 1 gce ngseg = 960 gce nlseg = 80 proc= 1 lun ngseg = 960 lun nlseg = 80 proc= 1 col ngseg = 960 col nlseg = 80 proc= 1 pft ngseg = 960 pft nlseg = 80 proc= 1 nclumps = 4 proc= 1 clump no = 1 clump id= 2 beg gridcell= 6675 end gridcell= 8342 total gridcells per clump= 1668 proc= 1 clump no = 1 clump id= 2 beg landunit= 8564 end landunit= 10648 total landunits per clump = 2085 proc= 1 clump no = 1 clump id= 2 beg column = 13335 end column = 16484 total columns per clump = 3150 proc= 1 clump no = 1 clump id= 2 beg pft = 85943 end pft = 107156 total pfts per clump = 21214 proc= 5 beg gridcell= 33371 end gridcell= 40044 total gridcells per proc= 6674 proc= 5 beg landunit= 42979 end landunit= 51445 total landunits per proc= 8467 proc= 5 beg column = 67064 end column = 80023 total columns per proc = 12960 proc= 5 beg pft = 428728 end pft = 515591 total pfts per proc = 86864 proc= 5 lnd ngseg = 2607 lnd nlseg = 215 proc= 5 gce ngseg = 960 gce nlseg = 80 proc= 5 lun ngseg = 960 lun nlseg = 80 proc= 5 col ngseg = 960 col nlseg = 80 proc= 5 pft ngseg = 960 pft nlseg = 80 proc= 5 nclumps = 4 proc= 5 clump no = 1 clump id= 6 beg gridcell= 33371 end gridcell= 35038 total gridcells per clump= 1668 proc= 5 clump no = 1 clump id= 6 beg landunit= 42979 end landunit= 45049 total landunits per clump = 2071 proc= 5 clump no = 1 clump id= 6 beg column = 67064 end column = 70248 total columns per clump = 3185 proc= 5 clump no = 1 clump id= 6 beg pft = 428728 end pft = 450168 total pfts per clump = 21441 proc= 10 beg gridcell= 66741 end gridcell= 73414 total gridcells per proc= 6674 proc= 10 beg landunit= 85921 end landunit= 94511 total landunits per proc= 8591 proc= 10 beg column = 133534 end column = 146903 total columns per proc = 13370 proc= 10 beg pft = 860702 end pft = 947447 total pfts per proc = 86746 proc= 10 lnd ngseg = 2607 lnd nlseg = 225 proc= 10 gce ngseg = 960 gce nlseg = 80 proc= 10 lun ngseg = 960 lun nlseg = 80 proc= 10 col ngseg = 960 col nlseg = 80 proc= 10 pft ngseg = 960 pft nlseg = 80 proc= 10 nclumps = 4 proc= 10 clump no = 1 clump id= 11 beg gridcell= 66741 end gridcell= 68408 total gridcells per clump= 1668 proc= 10 clump no = 1 clump id= 11 beg landunit= 85921 end landunit= 87997 total landunits per clump = 2077 proc= 10 clump no = 1 clump id= 11 beg column = 133534 end column = 136691 total columns per clump = 3158 proc= 10 clump no = 1 clump id= 11 beg pft = 860702 end pft = 882531 total pfts per clump = 21830 proc= 11 beg gridcell= 73415 end gridcell= 80086 total gridcells per proc= 6672 proc= 11 beg landunit= 94512 end landunit= 103130 total landunits per proc= 8619 proc= 11 beg column = 146904 end column = 160216 total columns per proc = 13313 proc= 11 beg pft = 947448 end pft = 1033160 total pfts per proc = 85713 proc= 11 lnd ngseg = 2607 lnd nlseg = 221 proc= 11 gce ngseg = 960 gce nlseg = 80 proc= 11 lun ngseg = 960 lun nlseg = 80 proc= 11 col ngseg = 960 col nlseg = 80 proc= 11 pft ngseg = 960 pft nlseg = 80 proc= 11 nclumps = 4 proc= 11 clump no = 1 clump id= 12 beg gridcell= 73415 end gridcell= 75082 total gridcells per clump= 1668 proc= 11 clump no = 1 clump id= 12 beg landunit= 94512 end landunit= 96700 total landunits per clump = 2189 proc= 11 clump no = 1 clump id= 12 beg column = 146904 end column = 150188 total columns per clump = 3285 proc= 11 clump no = 1 clump id= 12 beg pft = 947448 end pft = 968316 total pfts per clump = 20869 Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/lnd/clm2/surfdata/surf data_0.47x0.63_simyr1850_c100826.nc 393216 Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/lnd/clm2/surfdata/surf data_0.47x0.63_simyr1850_c100826.nc 393216 NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name NetCDF: Invalid dimension ID or name Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/lnd/clm2/snicardata/sn icar_optics_5bnd_c090915.nc 458752 Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/lnd/clm2/snicardata/sn icar_drdt_bst_fit_60_c070416.nc 458752 Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/lnd/clm2/initdata/clmi .BCN.0182-01-01_0.47x0.63_g1v6_simyr1850_c120324.nc 458752 NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found NetCDF: Variable not found(shr_stream_set) size of filename = 1(shr_stream_set) size of filename = 1(shr_stream_set) filename = /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/lnd/clm2/ndepdata/fndep_clm_hist_simyr1849-2006_1.9x2.5_c100428.nc(shr_stream_set) filename = /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/lnd/clm2/ndepdata/fndep_clm_hist_simyr1849-2006_1.9x2.5_c100428.nc(shr_stream_set) size of filename = 1(shr_stream_set) filename = /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/lnd/clm2/ndepdata/fndep_clm_hist_simyr1849-2006_1.9x2.5_c100428.nc(shr_stream_set) size of filename = 1(shr_stream_set) filename = /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/lnd/clm2/ndepdata/fndep_clm_hist_simyr1849-2006_1.9x2.5_c100428.nc(shr_stream_set) size of filename = 1(shr_stream_set) filename = /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/lnd/clm2/ndepdata/fndep_clm_hist_simyr1849-2006_1.9x2.5_c100428.nc(shr_stream_set) size of filename = 1(shr_stream_set) filename = /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/lnd/clm2/ndepdata/fndep_clm_hist_simyr1849-2006_1.9x2.5_c100428.nc(shr_stream_set) size of filename = 1(shr_stream_set) filename = /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/lnd/clm2/ndepdata/fndep_clm_hist_simyr1849-2006_1.9x2.5_c100428.nc(shr_stream_set) size of filename = 1(shr_stream_set) filename = /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/lnd/clm2/ndepdata/fndep_clm_hist_simyr1849-2006_1.9x2.5_c100428.nc(shr_stream_set) size of filename = 1(shr_stream_set) filename = /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/lnd/clm2/ndepdata/fndep_clm_hist_simyr1849-2006_1.9x2.5_c100428.nc(shr_stream_set) size of filename = 1(shr_stream_set) filename = /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/lnd/clm2/ndepdata/fndep_clm_hist_simyr1849-2006_1.9x2.5_c100428.nc(shr_stream_set) size of filename = 1(shr_stream_set) filename = /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/lnd/clm2/ndepdata/fndep_clm_hist_simyr1849-2006_1.9x2.5_c100428.nc hist_htapes_build hist tape = 1 written with dov2xy= T hist_htapes_build hist tape = 1 written with dov2xy= T hist_htapes_build hist tape = 1 written with dov2xy= T hist_htapes_build hist tape = 1 written with dov2xy= T hist_htapes_build hist tape = 1 written with dov2xy= T hist_htapes_build hist tape = 1 written with dov2xy= T hist_htapes_build hist tape = 1 written with dov2xy= T hist_htapes_build hist tape = 1 written with dov2xy= T hist_htapes_build hist tape = 1 written with dov2xy= T hist_htapes_build hist tape = 1 written with dov2xy= T hist_htapes_build hist tape = 1 written with dov2xy= T Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/lnd/clm2/rtmdata/rdirc _0.5x0.5_simyr2000_slpmxvl_c120717.nc 458752 rtm decomp info proc = 1 begr = 21630 endr = 43258 numr = 21629 proc = 1 begrl= 12706 endrl= 25848 numrl= 13143 proc = 1 begro= 8925 endro= 17410 numro= 8486 rtm decomp info proc = 5 begr = 108267 endr = 129912 numr = 21646 proc = 5 begrl= 54999 endrl= 64635 numrl= 9637 proc = 5 begro= 53269 endro= 65277 numro= 12009 rtm decomp info proc = 10 begr = 216754 endr = 238382 numr = 21629 proc = 10 begrl= 79612 endrl= 82326 numrl= 2715 proc = 10 begro= 137143 endro= 156056 numro= 18914 rtm decomp info proc = 11 begr = 238383 endr = 259200 numr = 20818 proc = 11 begrl= 82327 endrl= 84511 numrl= 2185 proc = 11 begro= 156057 endro= 174689 numro= 18633 Opened existing file /exports/home/asc01/chenfz/CESM/inputdata/inputdata_EXP1/rof/rtm/initdata/rtmi. I1850CRUCLM45BGC.0241-01-01.R05_simyr1850_c130515.nc 458752 Reading setup_nml Reading grid_nml Reading ice_nml Reading tracer_nmlCalcWorkPerBlock: Total blocks: 384 Ice blocks: 126 IceFree blocks: 229 Land blocks: 29MCT::m_Router::initp_: GSMap indices not increasing...Will correctMCT::m_Router::initp_: RGSMap indices not increasing...Will correctMCT::m_Router::initp_: RGSMap indices not increasing...Will correctMCT::m_Router::initp_: GSMap indices not increasing...Will correctMCT::m_Router::initp_: GSMap indices not increasing...Will correctMCT::m_Router::initp_: RGSMap indices not increasing...Will correctMCT::m_Router::initp_: RGSMap indices not increasing...Will correctMCT::m_Router::initp_: GSMap indices not increasing...Will correctMCT::m_Router::initp_: GSMap indices not increasing...Will correctMCT::m_Router::initp_: RGSMap indices not increasing...Will correctMCT::m_Router::initp_: RGSMap indices not increasing...Will correctMCT::m_Router::initp_: GSMap indices not increasing...Will correct(seq_domain_areafactinit) : min/max mdl2drv 0.964166830348515 1.03890667698306 areafact_o_OCN(seq_domain_areafactinit) : min/max drv2mdl 0.962550363911375 1.03716490603450 areafact_o_OCN
==================================================================================== BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES= PID 3237 RUNNING AT cu01= EXIT CODE: 11= CLEANING UP REMAINING PROCESSES= YOU CAN IGNORE THE BELOW CLEANUP MESSAGES===================================================================================YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Segmentation fault (signal 11)This typically refers to a problem with your application.Please see the FAQ page for debugging suggestionsAnd this is my env_mach_pes.xml :
My compiler is icc and ifort.mpi is mpich.Please help me to fix it.
