Program received signal SIGSEGV: Segmentation fault - invalid memory reference.

[Jiaojiao]

What version of the code are you using?
CESM2.2.2

Have you made any changes to files in the source tree?
No source code modifications.

modified configuration files
- config_machines.xml
- config_batch.xml
- config_compilers.xml:

Describe every step you took leading up to the problem:
1.Created a CLM-FATES single-point case:
./create_newcase \
--case global2014 \
--compset I2000Clm50SpGs \
--res CLM_USRDAT \
--mach forest2 \
--run-unsupported

2. ./case.setup

3. created those user* files
user_datm.streams.txt.CLMGSWP3v1.Precip
user_datm.streams.txt.CLMGSWP3v1.Solar
user_datm.streams.txt.CLMGSWP3v1.TPQW
user_datm.streams.txt.presaero.clim_2000
user_datm.streams.txt.topo.observed

4. ./preview_namelists

5. ./case.build --skip-provenance-check

6. ./case.submit --batch-args="--mem=48G --parsable"


Describe your problem or question:
The case failed. And no lnd.log* has created...

I attached the different types files:
1) $CASE directory
$CASE/Buildconf/clm.input_data_list
$CASE/Buildconf/datm.input_data_list

$CASE/CaseDocs/datm_in
$CASE/CaseDocs/drv_in
$CASE/CaseDocs/lnd_in

$CASE/user_nl_clm
$CASE/user_nl_datm

2) CASE output directory
/CIME_OUTPUT/global2014/run/cesm.log.17066356.251111-101305
/CIME_OUTPUT/global2014/run/atm.log.17066356.251111-101305
/CIME_OUTPUT/global2014/run/datm.streams.txt.CLMGSWP3v1.Precip
/CIME_OUTPUT/global2014/run/datm.streams.txt.CLMGSWP3v1.Solar
/CIME_OUTPUT/global2014/run/datm.streams.txt.CLMGSWP3v1.TPQW
/CIME_OUTPUT/global2014/run/datm.streams.txt.presaero.clim_2000
/CIME_OUTPUT/global2014/run/datm.streams.txt.topo.observed


Really appreciate any suggestions you might have.

Jiaojiao

 

[Jiaojiao]

more attachment..

 

[oleson]

This seems like a global CLM case, not a single-point CLM-FATES case right? The surface dataset is 360x720cru.
If you want to run a I2000Clm50SpGs case at 360x720cru resolution then I suggest the following:

./create_newcase --case global2014 --compset I2000Clm50SpGs --res hcru_hcru --run-unsupported

Then add this to your user_nl_clm:

fsurdat = '/scratch/user/jiaodong/inputdata/atm/datm7/atm_forcing.datm7.GSWP3.0.5d.v1.c170516/surfdata_360x720cru_16pfts_simyr2000_c170428.nc'

which is what you seem to be using as shown in your user_nl_clm file.

You shouldn't need to change anything with respect to the datm forcing (GSWP3).

 

[Jiaojiao]

Hi Oleson,

Thank you so much for the suggestion.

yes, this case in not a single point, it is global scale.

I will create a new case according the comment!

Jiaojiao