geoxiyang@gmail_com
New Member
Hi all,I followed the instruction under components/clm/tools/PTCLM to create a single-point surface data for US-Ha1 (or the default US-UMB). The run did not work either when it was submitted to the batch or when I ran PTCLMmkdata. Here is the error. Any idea of the reason? Thanks!./PTCLMmkdata --ctsm_root $CTSM_ROOT --cime_root $CIME_ROOT -s US-UMB -d /glade/p/cesmdata/cseg/inputdata---------------- PTCLMmkdata version PTCLM2_180611----------------------------- ./PTCLMmkdata --ctsm_root /glade/u/home/xiyang/cesm2_0_0/components/clm --cime_root /glade/u/home/xiyang/cesm2_0_0/cime -s US-UMB -d /glade/p/cesmdata/cseg/inputdata OPTIONS: Site name:US-UMB Root CTSM directory:/glade/u/home/xiyang/cesm2_0_0/components/clmRoot CIME directory:/glade/u/home/xiyang/cesm2_0_0/cime** Surface data file will be built using site-level data when available unless otherwise specified ** Extract PFT data from gridded files:FalseExtract soil data from gridded files:False Open Site data file: /gpfs/u/home/xiyang/cesm2_0_0/components/clm/tools/PTCLM/PTCLM_sitedata/PTCLMDATA_sitedata.txt CESM input data directory:/glade/p/cesmdata/cseg/inputdata---------------------------------------------------------------- Write /gpfs/u/home/xiyang/cesm2_0_0/components/clm/tools/PTCLM/mydatafiles/1x1pt_US-UMB/README.PTCLM with command lineRun command: /bin/chmod +x /gpfs/u/home/xiyang/cesm2_0_0/components/clm/tools/PTCLM/mydatafiles/1x1pt_US-UMB/shell_commandsMaking input files for the point (this may take a while if creating transient datasets)Creating map file for a point with no oceanlat=45.5598/glade/u/apps/ch/opt/ncl/6.4.0/intel/17.0.1/bin/nclRun command: /glade/u/home/xiyang/cesm2_0_0/components/clm/tools/mkmapdata/mknoocnmap.pl -p 45.5598,275.2862 -name 1x1pt_US-UMB > /gpfs/u/home/xiyang/cesm2_0_0/components/clm/tools/PTCLM/mydatafiles/1x1pt_US-UMB/mknoocnmap.logmapfile = /glade/u/home/xiyang/cesm2_0_0/components/clm/tools/mkmapdata/map_1x1pt_US-UMB_noocean_to_1x1pt_US-UMB_nomask_aave_da_181010.ncscripgridfile = /glade/u/home/xiyang/cesm2_0_0/components/clm/tools/mkmapgrids/SCRIPgrid_1x1pt_US-UMB_nomask_c181010.ncCreating data domainRun command: /glade/u/home/xiyang/cesm2_0_0/cime/tools/mapping/gen_domain_files/gen_domain -m /glade/u/home/xiyang/cesm2_0_0/components/clm/tools/mkmapdata/map_1x1pt_US-UMB_noocean_to_1x1pt_US-UMB_nomask_aave_da_181010.nc -o navy -l 1x1pt_US-UMB -c 'Running gen_domain from PTCLMmkdata' > /gpfs/u/home/xiyang/cesm2_0_0/components/clm/tools/PTCLM/mydatafiles/1x1pt_US-UMB/gen_domain.logdomainfile = domain.lnd.1x1pt_US-UMB_navy.181010.nc Re-create surface dataset: Re-create mapping files for surface dataset:Run command: /glade/u/home/xiyang/cesm2_0_0/components/clm/tools/mkmapdata/mkmapdata.sh --gridfile /glade/u/home/xiyang/cesm2_0_0/components/clm/tools/mkmapgrids/SCRIPgrid_1x1pt_US-UMB_nomask_c181010.nc --res 1x1pt_US-UMB --gridtype regional -v > /gpfs/u/home/xiyang/cesm2_0_0/components/clm/tools/PTCLM/mydatafiles/1x1pt_US-UMB/mkmapdata.logrm: cannot remove ‘PET*.Log’: No such file or directoryforrtl: severe (174): SIGSEGV, segmentation fault occurredImage PC Routine Line Source libirc.so 00007FFFE90857F1 tbk_trace_stack_i Unknown Unknownlibirc.so 00007FFFE908392B tbk_string_stack_ Unknown UnknownESMF_RegridWeight 0000000000471C54 Unknown Unknown UnknownESMF_RegridWeight 0000000000471A66 Unknown Unknown UnknownESMF_RegridWeight 0000000000418F89 Unknown Unknown UnknownESMF_RegridWeight 000000000041D7A6 Unknown Unknown Unknownlibpthread-2.19.s 00007FFFE8E61870 Unknown Unknown Unknownlibirc.so 00007FFFE90B1279 __intel_avx_rep_m Unknown Unknownlibesmf.so 00007FFFEC73BBD7 esmf_regridweight Unknown Unknownlibesmf.so 00007FFFEC734689 esmf_regridweight Unknown UnknownESMF_RegridWeight 0000000000408187 Unknown Unknown UnknownESMF_RegridWeight 00000000004049CE Unknown Unknown Unknownlibc-2.19.so 00007FFFE86BFB25 __libc_start_main Unknown UnknownESMF_RegridWeight 00000000004048D9 Unknown Unknown Unknownforrtl: severe (174): SIGSEGV, segmentation fault occurredImage PC Routine Line Source ESMF_RegridWeight 000000000041DACB Unknown Unknown Unknownlibpthread-2.19.s 00007FFFE8E61870 Unknown Unknown Unknownlibiomp5.so 00007FFFE97B1564 Unknown Unknown Unknownld-2.19.so 00007FFFED8F2F18 Unknown Unknown Unknownlibc-2.19.so 00007FFFE86D5B39 Unknown Unknown Unknownlibc-2.19.so 00007FFFE86D5B85 Unknown Unknown UnknownESMF_RegridWeight 0000000000418F29 Unknown Unknown UnknownESMF_RegridWeight 000000000041D7A6 Unknown Unknown Unknownlibpthread-2.19.s 00007FFFE8E61870 Unknown Unknown Unknownlibirc.so 00007FFFE90B1279 __intel_avx_rep_m Unknown Unknownlibesmf.so 00007FFFEC73BBD7 esmf_regridweight Unknown Unknownlibesmf.so 00007FFFEC734689 esmf_regridweight Unknown UnknownESMF_RegridWeight 0000000000408187 Unknown Unknown UnknownESMF_RegridWeight 00000000004049CE Unknown Unknown Unknownlibc-2.19.so 00007FFFE86BFB25 __libc_start_main Unknown UnknownESMF_RegridWeight 00000000004048D9 Unknown Unknown UnknownERROR(./PTCLMmkdata):: Error running command: /glade/u/home/xiyang/cesm2_0_0/components/clm/tools/mkmapdata/mkmapdata.sh --gridfile /glade/u/home/xiyang/cesm2_0_0/components/clm/tools/mkmapgrids/SCRIPgrid_1x1pt_US-UMB_nomask_c181010.nc --res 1x1pt_US-UMB --gridtype regional -v > /gpfs/u/home/xiyang/cesm2_0_0/components/clm/tools/PTCLM/mydatafiles/1x1pt_US-UMB/mkmapdata.logAborted (core dumped)