I submitted (./case.submit --no-batch) a simple 3-day testrun "--compset QPC4 --res f45_f45_mg37 --run-unsupported" in CESM2 and got the output below. I was expecting to at least find some output in the archive sub-directory /atm/hist/ but got none. Or is the 3day trial not enough to generate these files? From what I have below, the model executed successfully, but it also says :" WARNING: ncdump -v nhfil /....../output/exp1/run/exp1.cam.rs.0001-01-04-00000.nc failed rc=1 out= err=ncdump: nhfil: No such variable" . Did anything really go wrong?
MODEL EXECUTION BEGINS HERE
run command is mpirun -np 4 /../output/exp1/bld/cesm.exe >> cesm.log.$LID 2>&1
2024-05-30 08:28:42 MODEL EXECUTION HAS FINISHED
check for resubmit
dout_s True
mach pansah
resubmit_num 0
Submit job case.st_archive
Starting job script case.st_archive
st_archive starting
moving /.../output/exp1/run/cesm.log.7960370.240529-235954 to /..../cesm_archive/logs/cesm.log.7960370.240529-235954
moving /..../output/exp1/run/cesm.log.240530-082634.gz to /..../cesm_archive/logs/cesm.log.240530-082634.gz
moving /..../output/exp1/run/cpl.log.240530-082634.gz to /...../cesm_archive/logs/cpl.log.240530-082634.gz
moving /....../output/exp1/run/atm.log.240530-082634.gz to /...../cesm_archive/logs/atm.log.240530-082634.gz
moving /...../output/exp1/run/ocn.log.240530-082634.gz to /...../cesm_archive/logs/ocn.log.240530-082634.gz
-------------------------------------------
Archiving restarts for date date(1, 1, 4, 0, 0, 0)
-------------------------------------------
Archiving restarts for cam (atm)
copying file /...../output/exp1/run/exp1.cam.r.0001-01-04-00000.nc to /......./cesm_archive/rest/0001-01-04-00000/exp1.cam.r.0001-01-04-00000.nc
WARNING: ncdump -v nhfil /....../exp1/run/exp1.cam.rh0.0001-01-04-00000.nc failed rc=1
out=
err=ncdump: nhfil: No such variable
copying file /....../output/exp1/run/exp1.cam.rh0.0001-01-04-00000.nc to /...../cesm_archive/rest/0001-01-04-00000/exp1.cam.rh0.0001-01-04-00000.nc
WARNING: ncdump -v nhfil /....../output/exp1/run/exp1.cam.rs.0001-01-04-00000.nc failed rc=1
out=
err=ncdump: nhfil: No such variable
copying file /...../output/exp1/run/exp1.cam.rs.0001-01-04-00000.nc to /...../cesm_archive/rest/0001-01-04-00000/exp1.cam.rs.0001-01-04-00000.nc
Archiving restarts for docn (ocn)
copying file /....../output/exp1/run/exp1.docn.rs1.0001-01-04-00000.bin to /....../cesm_archive/rest/0001-01-04-00000/exp1.docn.rs1.0001-01-04-00000.bin
Archiving restarts for drv (cpl)
copying file /...../exp1/run/exp1.cpl.r.0001-01-04-00000.nc to /...../cesm_archive/rest/0001-01-04-00000/exp1.cpl.r.0001-01-04-00000.nc
Archiving restarts for dart (esp)
Archiving history files for cam (atm)
Archiving history files for docn (ocn)
Archiving history files for drv (cpl)
Archiving history files for dart (esp)
st_archive completed
Submitted job case.run with id None
Submitted job case.st_archive with id None
MODEL EXECUTION BEGINS HERE
run command is mpirun -np 4 /../output/exp1/bld/cesm.exe >> cesm.log.$LID 2>&1
2024-05-30 08:28:42 MODEL EXECUTION HAS FINISHED
check for resubmit
dout_s True
mach pansah
resubmit_num 0
Submit job case.st_archive
Starting job script case.st_archive
st_archive starting
moving /.../output/exp1/run/cesm.log.7960370.240529-235954 to /..../cesm_archive/logs/cesm.log.7960370.240529-235954
moving /..../output/exp1/run/cesm.log.240530-082634.gz to /..../cesm_archive/logs/cesm.log.240530-082634.gz
moving /..../output/exp1/run/cpl.log.240530-082634.gz to /...../cesm_archive/logs/cpl.log.240530-082634.gz
moving /....../output/exp1/run/atm.log.240530-082634.gz to /...../cesm_archive/logs/atm.log.240530-082634.gz
moving /...../output/exp1/run/ocn.log.240530-082634.gz to /...../cesm_archive/logs/ocn.log.240530-082634.gz
-------------------------------------------
Archiving restarts for date date(1, 1, 4, 0, 0, 0)
-------------------------------------------
Archiving restarts for cam (atm)
copying file /...../output/exp1/run/exp1.cam.r.0001-01-04-00000.nc to /......./cesm_archive/rest/0001-01-04-00000/exp1.cam.r.0001-01-04-00000.nc
WARNING: ncdump -v nhfil /....../exp1/run/exp1.cam.rh0.0001-01-04-00000.nc failed rc=1
out=
err=ncdump: nhfil: No such variable
copying file /....../output/exp1/run/exp1.cam.rh0.0001-01-04-00000.nc to /...../cesm_archive/rest/0001-01-04-00000/exp1.cam.rh0.0001-01-04-00000.nc
WARNING: ncdump -v nhfil /....../output/exp1/run/exp1.cam.rs.0001-01-04-00000.nc failed rc=1
out=
err=ncdump: nhfil: No such variable
copying file /...../output/exp1/run/exp1.cam.rs.0001-01-04-00000.nc to /...../cesm_archive/rest/0001-01-04-00000/exp1.cam.rs.0001-01-04-00000.nc
Archiving restarts for docn (ocn)
copying file /....../output/exp1/run/exp1.docn.rs1.0001-01-04-00000.bin to /....../cesm_archive/rest/0001-01-04-00000/exp1.docn.rs1.0001-01-04-00000.bin
Archiving restarts for drv (cpl)
copying file /...../exp1/run/exp1.cpl.r.0001-01-04-00000.nc to /...../cesm_archive/rest/0001-01-04-00000/exp1.cpl.r.0001-01-04-00000.nc
Archiving restarts for dart (esp)
Archiving history files for cam (atm)
Archiving history files for docn (ocn)
Archiving history files for drv (cpl)
Archiving history files for dart (esp)
st_archive completed
Submitted job case.run with id None
Submitted job case.st_archive with id None