Some problems when running gen_domain

[xianglin]

Dear All


Recently I've been trying to use CESM 1.2.2 to modify some of the land and sea distributions. I am having some problems running gen_domain. Could you please give some suggestions?

./gen_domain -m /glade/u/home/xianglinren/cesmtry/map_gx1PT_TO_fv19_25_aave.231031.nc -o gx1PT -l fv19_25

fmap = /glade/u/home/xianglinren/cesmtry/map_gx1PT_TO_fv19_25_aave.231031.nc


fn1_out_ocn= domain.ocn.gx1PT.231031.nc


fn2_out_lnd= domain.lnd.fv19_25_gx1PT.231031.nc


fn2_out_ocn= domain.ocn.fv19_25_gx1PT.231031.nc


usercomment= null


eps = 9.999999960041972E-013


fminval= 1.000000047497451E-003


fmaxval= 1.00000000000000


set_fv_pole_yc = 0





input SCRIP data...


pole_fix = F





input file =


/glade/u/home/xianglinren/cesmtry/map_gx1PT_TO_fv19_25_aave.231031.nc


open /glade/u/home/xianglinren/cesmtry/map_gx1PT_TO_fv19_25_aave.231031.nc


domain_a = /glade/u/home/xianglinren/cesmtry/gx1PT_2_231031.nc


domain_b = /glade/u/home/xianglinren/cesmtry/fv1.9x2.5_090205.nc


grid_file_ocn= /glade/u/home/xianglinren/cesmtry/gx1PT_2_231031.nc


grid_file_atm= /glade/u/home/xianglinren/cesmtry/fv1.9x2.5_090205.nc


n,nv,ni,nj,na,ns= 122880 4 122880 1 122880


159921





output domain data...


nf = 1


create domain.ocn.gx1PT.231031.nc


netcdf error with rcode = 13 error =


Permission denied





forrtl: severe (174): SIGSEGV, segmentation fault occurred


Image PC Routine Line Source


gen_domain 00000000007CF6D1 Unknown Unknown Unknown


gen_domain 00000000007CD80B Unknown Unknown Unknown


gen_domain 00000000007A79F4 Unknown Unknown Unknown


gen_domain 00000000007A7806 Unknown Unknown Unknown


gen_domain 000000000078CA79 Unknown Unknown Unknown


gen_domain 0000000000748476 Unknown Unknown Unknown


libpthread-2.22.s 00007FD376E3BC00 Unknown Unknown Unknown


libc-2.22.so 00007FD376B82DE1 __strncat_chk Unknown Unknown


gen_domain 000000000074770C Unknown Unknown Unknown


gen_domain 00000000004055ED fmain_IP_check_re 480 gen_domain.F90


gen_domain 000000000040C21B fmain_IP_gen_doma 438 gen_domain.F90


gen_domain 0000000000404B56 MAIN__ 110 gen_domain.F90


gen_domain 000000000040419E Unknown Unknown Unknown


libc-2.22.so 00007FD376AA8A35 __libc_start_main Unknown Unknown


gen_domain 00000000004040A9 Unknown Unknown Unknown


Best,
Xianglin

 

[nick]

"Permission denied" looks like a file access issue. Do you have write permission? And try deleting any files that the tool is trying to create.