I modified the emission data for OC, SO2 , and BC in the atm component of CESM2.1.4 F2000climo_f09_f09; however, I noticed that the official emission data used by CESM contains no missing values or associated dimensions, for example:

But the data I obtained from the CEDS website has missing values:

I would like to ask how these missing values should be handled?
Currently, I have set all missing values to 0 and manually removed the missing value dimensions of the variables by:
delete(num_ene_ind_so4_vert@_FillValue)
The model can run successfully, but I am unsure whether this will affect the results.

But the data I obtained from the CEDS website has missing values:

I would like to ask how these missing values should be handled?
Currently, I have set all missing values to 0 and manually removed the missing value dimensions of the variables by:
delete(num_ene_ind_so4_vert@_FillValue)
The model can run successfully, but I am unsure whether this will affect the results.