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Where to find the SC-WACCM output used in Neely et al. (2014)?

S

simchan_yook@colostate_edu

Member
Hi all,

I've been trying to find the output of historical simulations run on SC-WACCM used in Neely et al. (2014).
I've searched it from GLADE file spaces and ESG, but couldn't find it.... Can I get some help for finding those data?

Thank you,
Shim
 
mmills

mmills

CSEG and Liaisons
Staff member
I think everything is here:

/gpfs/fs1/p/acom/acom-climate/waccm/scwaccm

Please let me know if anything is missing, or if this is not the data you are looking for.
 
S

simchan_yook@colostate_edu

Member
Thanks, Mike.

I guess folders named b40.1955-2005.2deg.wcm.XXX have data from historical simulations?

Neely et al. (2014) noted that they ran two ensembles (one specified with monthly mean ozone and another one with daily mean ozone) of six members,
I was wondering which set of ensemble is saved in the acom-storage?
Also, I was wondering why there are 7 runs (002,003,004,005,006,007 and 013) not 6?

Again, thanks for your help.



mmills said:
I think everything is here:

/gpfs/fs1/p/acom/acom-climate/waccm/scwaccm

Please let me know if anything is missing, or if this is not the data you are looking for.
Click to expand...
 
mmills

mmills

CSEG and Liaisons
Staff member
You may want to contact Ryan Neely at R.Neely@leeds.ac.uk

I have located additional output on NCAR's HPSS system, which I am now copying to glade. Here is some information I have from a 2015 email from Neely:

So all the NOAA WACCM simulations are now on yellowstone. I have emailed you all as I hope they will be utilized by the community now that they are out from behind the iron curtain of security. Please use them as much as you can and follow the data policy below. It is meant to be very similar in spirit to NCAR’s policy (Acknowledging NCAR/CISL | Computational Information Systems Laboratory) so that NOAA can measure the impact that their resources have on science output.

List of all transient WACCM runs done on the NOAA supercomputer that are now fully available on the NCAR HPSS under /CCSM/csm:

b40.1955-2005.2deg.wcm.005
b40.1955-2005.2deg.wcm.006
b40.1955-2005.2deg.wcm.007
b40.1955-2005.2deg.wcm.008
b40.1955-2005.2deg.wcm.009
b40.1955-2005.2deg.wcm.010
b40.1955-2005.2deg.wcm.011
b40.1955-2005.2deg.wcm.012
b40.1955-2005.2deg.wcm.013
b40.1955-2005.2deg.wcm.014
GBSCWACCM1955_2005101
GBSCWACCM1955_2005102
GBSCWACCM1955_2005103
GBSCWACCM1955_2005111
GBSCWACCM1955_2005121
GBSCWACCM1955_2005131
GBSCWACCM1955_200551
GBSCWACCM1955_200552
GBSCWACCM1955_200553
GBSCWACCM1955_200554
GBSCWACCM1955_200561
GBSCWACCM1955_200562
GBSCWACCM1955_200563
GBSCWACCM1955_200571
GBSCWACCM1955_200572
GBSCWACCM1955_200573
GBSCWACCM1955_200581
GBSCWACCM1955_200582
GBSCWACCM1955_200583
GBSCWACCM1955_200584
GBSCWACCM1955_200591
GBSCWACCM1955_200592
GBSCWACCM1955_200593


Notes:
1) Some of the directory structures are slightly different to those ran on yellowstone due to NOAA’s CESM setup.
2) All of the b40 atm files are on my scratch disk under /glade/scratch/rneely/b40/ (This will only be up there until it gets purged automatically as per NCAR policy)
3) All of the b40 atm files are on my scratch disk under /glade/scratch/rneely/sc/ (This will only be up there until it gets purged automatically as per NCAR policy)
4) So the SC naming system is probably going to annoy a lot of people. It was done by me so I could keep track of what runs used which initial conditions and which ozone file easily but then we did a lot more runs and things got our of hand. Attached is a list of each of the SC runs and what file ozone file and which IC file they used.

Usage Policy that applies to all of the runs list above:
1) If you use any of these runs for your science (or tell anyone else about them and they use the runs) please let me know so I can keep track of the output that has resulted for NOAA’s documentation.
2) The resources that went into the creation and curation of this data need to be cited correctly.

The acknowledgement for NOAA, NCAR and my time spent not these runs should be something like: "The authors acknowledge the NOAA Research and Development High Performance Computing Program for providing computing and storage resources that significantly contributed to the research results reported within this paper ( http://rdhpcs.noaa.gov ). We also thank Henry LeRoy Miller for his assistance with NOAA’s high performance computing facilities. Computing resources were also provided by the Climate Simulation Laboratory at NCAR’s Computational and Information Systems Laboratory (CISL), sponsored by the National Science Foundation and other agencies. Ryan R. Neely III is currently supported by the National Center for Atmospheric Research's Advanced Study Program and as a postdoctoral research associate at NOAA/ESRL.”

Please check with me on this as NOAA’s and NCAR’s specifically approved language may change.
 
mmills

mmills

CSEG and Liaisons
Staff member
Actually, I have just realized that the b40.1955-2005.2deg.wcm.XXX runs are not SC-WACCM runs, but are additional ensemble members for the CMIP5 CESM1(WACCM) historical simulations. I will move these out of the scwaccm directory.

The ensemble of transient (1955-2005) runs with specified chemistry WACCM and coupled ocean as described in Neely et al. (2014) are:

GBSCWACCM1955_2005101
GBSCWACCM1955_2005102
GBSCWACCM1955_2005103
GBSCWACCM1955_2005111
GBSCWACCM1955_2005121
GBSCWACCM1955_2005131
GBSCWACCM1955_200551
GBSCWACCM1955_200552
GBSCWACCM1955_200553
GBSCWACCM1955_200554
GBSCWACCM1955_200561
GBSCWACCM1955_200562
GBSCWACCM1955_200563
GBSCWACCM1955_200571
GBSCWACCM1955_200572
GBSCWACCM1955_200573
GBSCWACCM1955_200581
GBSCWACCM1955_200582
GBSCWACCM1955_200583
GBSCWACCM1955_200584
GBSCWACCM1955_200591
GBSCWACCM1955_200592
GBSCWACCM1955_200593

Some of the output is missing from /gpfs/fs1/p/acom/acom-climate/waccm/scwaccm

I am trying to locate it.

Reference: Neely, R. R., III, D. R. Marsh, K. L. Smith, S. M. Davis, and L. M. Polvani (2014), Biases in Southern Hemisphere climate trends induced by coarsely specifying the temporal resolution of stratospheric ozone, Geophys Res Lett, 41(23), n/a–n/a, doi:10.1002/2014GL061627.
 
S

simchan_yook@colostate_edu

Member
Thank you very much.

Since I was still wondering whether GBSCWACCM1955_2005XXX runs have used 1) monthly-mean or 2) daily-mean ozone profile,
I have checked its log file and I have found:
ozone is prescribed in :b40.1955-2005.2deg.wcm.567.cam2.h3.1955-2005O32lons.nc
trcdata_init: data type: SERIAL file: b40.1955-2005.2deg.wcm.567.cam2.h3.1955-2005O32lons.nc

Does it mean that it has been prescribed with daily mean ozone profile?
(or do you still have the "Attached is a list of each of the SC runs and what file ozone file and which IC file they used." that Ryan mentioned in his email?)

Again, I really appreciate your help.





mmills said:
Actually, I have just realized that the b40.1955-2005.2deg.wcm.XXX runs are not SC-WACCM runs, but are additional ensemble members for the CMIP5 CESM1(WACCM) historical simulations. I will move these out of the scwaccm directory.

The ensemble of transient (1955-2005) runs with specified chemistry WACCM and coupled ocean as described in Neely et al. (2014) are:

GBSCWACCM1955_2005101
GBSCWACCM1955_2005102
GBSCWACCM1955_2005103
GBSCWACCM1955_2005111
GBSCWACCM1955_2005121
GBSCWACCM1955_2005131
GBSCWACCM1955_200551
GBSCWACCM1955_200552
GBSCWACCM1955_200553
GBSCWACCM1955_200554
GBSCWACCM1955_200561
GBSCWACCM1955_200562
GBSCWACCM1955_200563
GBSCWACCM1955_200571
GBSCWACCM1955_200572
GBSCWACCM1955_200573
GBSCWACCM1955_200581
GBSCWACCM1955_200582
GBSCWACCM1955_200583
GBSCWACCM1955_200584
GBSCWACCM1955_200591
GBSCWACCM1955_200592
GBSCWACCM1955_200593

Some of the output is missing from /gpfs/fs1/p/acom/acom-climate/waccm/scwaccm

I am trying to locate it.

Reference: Neely, R. R., III, D. R. Marsh, K. L. Smith, S. M. Davis, and L. M. Polvani (2014), Biases in Southern Hemisphere climate trends induced by coarsely specifying the temporal resolution of stratospheric ozone, Geophys Res Lett, 41(23), n/a–n/a, doi:10.1002/2014GL061627.
Click to expand...
 
mmills

mmills

CSEG and Liaisons
Staff member
If I had to guess, I would say that the h3 in the file name indicates that the ozone comes from daily, rather than monthly (h0) output. Otherwise, I have not found any clues in Neely et al. (2014) as to which runs are members of the daily ozone ensemble, and which are members of the monthly ozone ensemble.

The full set of output is on the NCAR HPSS under /CCSM/csm. I am copying it to glade, but it will take several weeks. I started a process of publishing this to the Earth System Grid in 2018, but it was never completed. I am following through on that now.
 
mmills

mmills

CSEG and Liaisons
Staff member
I have attached a text file from Neely with descriptions of the runs. This confirms that h3 files are daily and h0 files are monthly. Decoding it, I have produced the list of ensemble members below. I have asked Neely for clarification as to which 6 runs in each ensemble were used in the paper.

Monthly ozone ensemble
  1. GBSCWACCM1955_2005111
  2. GBSCWACCM1955_2005121
  3. GBSCWACCM1955_2005131
  4. GBSCWACCM1955_200551
  5. GBSCWACCM1955_200552
  6. GBSCWACCM1955_200553
  7. GBSCWACCM1955_200554
  8. GBSCWACCM1955_200561
  9. GBSCWACCM1955_200562
  10. GBSCWACCM1955_200563
  11. GBSCWACCM1955_200571
  12. GBSCWACCM1955_200572
  13. GBSCWACCM1955_200573
Daily ozone ensemble
  1. GBSCWACCM1955_2005101
  2. GBSCWACCM1955_2005102
  3. GBSCWACCM1955_2005103
  4. GBSCWACCM1955_200581
  5. GBSCWACCM1955_200582
  6. GBSCWACCM1955_200583
  7. GBSCWACCM1955_200584
  8. GBSCWACCM1955_200591
  9. GBSCWACCM1955_200592
  10. GBSCWACCM1955_200593
 

Attachments

  • SCWACCM1955-2005codexNeelyEtAl2014.txt
    11.2 KB · Views: 0
S

simchan_yook@colostate_edu

Member
Thank you!

mmills said:
I have attached a text file from Neely with descriptions of the runs. This confirms that h3 files are daily and h0 files are monthly. Decoding it, I have produced the list of ensemble members below. I have asked Neely for clarification as to which 6 runs in each ensemble were used in the paper.

Monthly ozone ensemble
  1. GBSCWACCM1955_2005111
  2. GBSCWACCM1955_2005121
  3. GBSCWACCM1955_2005131
  4. GBSCWACCM1955_200551
  5. GBSCWACCM1955_200552
  6. GBSCWACCM1955_200553
  7. GBSCWACCM1955_200554
  8. GBSCWACCM1955_200561
  9. GBSCWACCM1955_200562
  10. GBSCWACCM1955_200563
  11. GBSCWACCM1955_200571
  12. GBSCWACCM1955_200572
  13. GBSCWACCM1955_200573
Daily ozone ensemble
  1. GBSCWACCM1955_2005101
  2. GBSCWACCM1955_2005102
  3. GBSCWACCM1955_2005103
  4. GBSCWACCM1955_200581
  5. GBSCWACCM1955_200582
  6. GBSCWACCM1955_200583
  7. GBSCWACCM1955_200584
  8. GBSCWACCM1955_200591
  9. GBSCWACCM1955_200592
  10. GBSCWACCM1955_200593
Click to expand...
 
mmills

mmills

CSEG and Liaisons
Staff member
We are working on getting all of the output on the Earth System Grid now. I did get the reply below from Neely:

I did do more runs at NOAA after the publication. I think I did it as part of the review as they wanted to see the impact of more members. It did not change the story.

I cannot remember which were which and this swerve my notes run out. I also do not have access to all the code but from a script that I made one plot I think it was

1. GBSCWACCM1955_200551
2. GBSCWACCM1955_200552

1. GBSCWACCM1955_200561
2. GBSCWACCM1955_200562

1. GBSCWACCM1955_200571
2. GBSCWACCM1955_200572

and

1. GBSCWACCM1955_200581
2. GBSCWACCM1955_200582

1. GBSCWACCM1955_200591
2. GBSCWACCM1955_200592

1. GBSCWACCM1955_2005101
2. GBSCWACCM1955_2005102
Click to expand...
 
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