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ERROR: /CESM2.2/cime/src/build_scripts/buildlib.pio FAILED

G

Gamling Dang

gamlingdang
New Member
Hi, everyone! When I porting CESM to a new HPC cluster, I encountered an error when building PIO. The error is: ERROR: /home/CESM2.2/cime/src/build_scripts/buildlib.pio FAILED, cat /home/scratch/cesm/run/test_case/bld/pio.bldlog.230810-152340. In the pio.bldlog:

pio_version_major = None pio_version = 1
make /public/home/kali/scratch/cesm/run/01x01_10y.GSWP3.230810.CESM2.2_002/bld/gnu/openmpi/nodebug/nothreads/mct/pio/pio1/Makefile -C /public/home/kali/scratch/cesm/run/01x01_10y.GSWP3.230810.CESM2.2_002/bld/gnu/openmpi/nodebug/nothreads/mct/pio/pio1 CASEROOT=/public/home/kali/scratch/cesm/case/01x01_10y.GSWP3.230810.CESM2.2_002 MODEL=pio1 COMP_NAME=pio1 USER_CMAKE_OPTS="-D GENF90_PATH=$CIMEROOT/src/externals/genf90 " PIO_LIBDIR=/public/home/kali/scratch/cesm/run/01x01_10y.GSWP3.230810.CESM2.2_002/bld/gnu/openmpi/nodebug/nothreads/mct/pio/pio1 CASETOOLS=/public/home/kali/scratch/cesm/case/01x01_10y.GSWP3.230810.CESM2.2_002/Tools USER_CPPDEFS=-DTIMING CIME_MODEL=cesm SMP=FALSE CASEROOT="/public/home/kali/scratch/cesm/case/01x01_10y.GSWP3.230810.CESM2.2_002" CASETOOLS="/public/home/kali/scratch/cesm/case/01x01_10y.GSWP3.230810.CESM2.2_002/Tools" CIMEROOT="/public/home/kali/CESM2.2/cime" COMP_INTERFACE="mct" COMPILER="gnu" DEBUG="FALSE" EXEROOT="/public/home/kali/scratch/cesm/run/01x01_10y.GSWP3.230810.CESM2.2_002/bld" INCROOT="/public/home/kali/scratch/cesm/run/01x01_10y.GSWP3.230810.CESM2.2_002/bld/lib/include" LIBROOT="/public/home/kali/scratch/cesm/run/01x01_10y.GSWP3.230810.CESM2.2_002/bld/lib" MACH="eesrf" MPILIB="openmpi" NINST_VALUE="c1a1l1i1o1r1g1w1i1e1" OS="LINUX" PIO_VERSION="1" SHAREDLIBROOT="/public/home/kali/scratch/cesm/run/01x01_10y.GSWP3.230810.CESM2.2_002/bld" SMP_PRESENT="FALSE" USE_ESMF_LIB="FALSE" USE_MOAB="FALSE" COMP_LND="clm" COMPARE_TO_NUOPC="FALSE" USE_TRILINOS="FALSE" USE_ALBANY="FALSE" USE_PETSC="FALSE" -f /public/home/kali/scratch/cesm/case/01x01_10y.GSWP3.230810.CESM2.2_002/Tools/Makefile
make: Entering directory '/public/home/kali/scratch/cesm/run/01x01_10y.GSWP3.230810.CESM2.2_002/bld/gnu/openmpi/nodebug/nothreads/mct/pio/pio1'
/public/home/kali/scratch/cesm/case/01x01_10y.GSWP3.230810.CESM2.2_002/Tools/mkSrcfiles
cp -f Filepath Deppath
/public/home/kali/scratch/cesm/case/01x01_10y.GSWP3.230810.CESM2.2_002/Tools/mkDepends Deppath Srcfiles > Depends
cd /public/home/kali/scratch/cesm/run/01x01_10y.GSWP3.230810.CESM2.2_002/bld/gnu/openmpi/nodebug/nothreads/mct/pio/pio1; \
CC=mpicc CXX=mpicxx FC=mpif90 LDFLAGS="" cmake -D CMAKE_Fortran_FLAGS:STRING="-fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fallow-argument-mismatch -fallow-invalid-boz -O -DTIMING -DLINUX -DCESMCOUPLED -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DNDEBUG -DHAVE_MPI -DMCT_INTERFACE -DPIO1 -DHAVE_SLASHPROC -DATM_PRESENT -DICE_PRESENT -DLND_PRESENT -DOCN_PRESENT -DROF_PRESENT -DGLC_PRESENT -DWAV_PRESENT -DESP_PRESENT -DMED_PRESENT -I. -I/public/home/kali/scratch/cesm/run/01x01_10y.GSWP3.230810.CESM2.2_002/bld/gnu/openmpi/nodebug/nothreads/mct/include -I/public/home/kali/scratch/cesm/run/01x01_10y.GSWP3.230810.CESM2.2_002/bld/gnu/openmpi/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/public/home/kali/scratch/cesm/run/01x01_10y.GSWP3.230810.CESM2.2_002/bld/gnu/openmpi/nodebug/nothreads/mct/finclude -I/public/apps/netcdf-c-4.9.2/include -I/public/apps/netcdf-fortran-4.6.1/include -I/public/home/kali/scratch/cesm/run/01x01_10y.GSWP3.230810.CESM2.2_002/bld/gnu/openmpi/nodebug/nothreads/mct/include" -D CMAKE_C_FLAGS:STRING="-std=gnu99 -O -DTIMING -DLINUX -DCESMCOUPLED -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DNDEBUG -DHAVE_MPI -DMCT_INTERFACE -DPIO1 -DHAVE_SLASHPROC -DATM_PRESENT -DICE_PRESENT -DLND_PRESENT -DOCN_PRESENT -DROF_PRESENT -DGLC_PRESENT -DWAV_PRESENT -DESP_PRESENT -DMED_PRESENT -I. -I/public/home/kali/scratch/cesm/run/01x01_10y.GSWP3.230810.CESM2.2_002/bld/gnu/openmpi/nodebug/nothreads/mct/include -I/public/home/kali/scratch/cesm/run/01x01_10y.GSWP3.230810.CESM2.2_002/bld/gnu/openmpi/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/public/home/kali/scratch/cesm/run/01x01_10y.GSWP3.230810.CESM2.2_002/bld/gnu/openmpi/nodebug/nothreads/mct/finclude -I/public/apps/netcdf-c-4.9.2/include -I/public/apps/netcdf-fortran-4.6.1/include -I/public/home/kali/scratch/cesm/run/01x01_10y.GSWP3.230810.CESM2.2_002/bld/gnu/openmpi/nodebug/nothreads/mct/include" -D CMAKE_CXX_FLAGS:STRING="-DTIMING -DLINUX -DCESMCOUPLED -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DNDEBUG -DHAVE_MPI -DMCT_INTERFACE -DPIO1 -DHAVE_SLASHPROC -DATM_PRESENT -DICE_PRESENT -DLND_PRESENT -DOCN_PRESENT -DROF_PRESENT -DGLC_PRESENT -DWAV_PRESENT -DESP_PRESENT -DMED_PRESENT -I. -I/public/home/kali/scratch/cesm/run/01x01_10y.GSWP3.230810.CESM2.2_002/bld/gnu/openmpi/nodebug/nothreads/mct/include -I/public/home/kali/scratch/cesm/run/01x01_10y.GSWP3.230810.CESM2.2_002/bld/gnu/openmpi/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include -I/public/home/kali/scratch/cesm/run/01x01_10y.GSWP3.230810.CESM2.2_002/bld/gnu/openmpi/nodebug/nothreads/mct/finclude -I/public/apps/netcdf-c-4.9.2/include -I/public/apps/netcdf-fortran-4.6.1/include -I/public/home/kali/scratch/cesm/run/01x01_10y.GSWP3.230810.CESM2.2_002/bld/gnu/openmpi/nodebug/nothreads/mct/include" -D CMAKE_VERBOSE_MAKEFILE:BOOL=ON -D GPTL_PATH:STRING=/public/home/kali/scratch/cesm/run/01x01_10y.GSWP3.230810.CESM2.2_002/bld/gnu/openmpi/nodebug/nothreads/mct -D PIO_ENABLE_TESTS:BOOL=OFF -D PIO_USE_MALLOC:BOOL=ON -D USER_CMAKE_MODULE_PATH:LIST="/public/home/kali/CESM2.2/cime/src/CMake;/public/home/kali/CESM2.2/cime/src/externals/pio2/cmake" -D NetCDF_C_PATH:PATH=/public/apps/netcdf-c-4.9.2 -D NetCDF_Fortran_PATH:PATH=/public/apps/netcdf-fortran-4.6.1 -D WITH_PNETCDF:LOGICAL=FALSE -D PIO_USE_MPIIO:LOGICAL=FALSE -D GENF90_PATH=/public/home/kali/CESM2.2/cime/scripts/Tools/../../src/externals/genf90 /public/home/kali/CESM2.2/cime/src/externals/pio1
make: Leaving directory '/public/home/kali/scratch/cesm/run/01x01_10y.GSWP3.230810.CESM2.2_002/bld/gnu/openmpi/nodebug/nothreads/mct/pio/pio1'
cat: Filepath: No such file or directory
cat: Srcfiles: No such file or directory
/bin/sh: line 2: cmake: command not found
make: *** [/public/home/kali/scratch/cesm/case/01x01_10y.GSWP3.230810.CESM2.2_002/Tools/Makefile:798: /public/home/kali/scratch/cesm/run/01x01_10y.GSWP3.230810.CESM2.2_002/bld/gnu/openmpi/nodebug/nothreads/mct/pio/pio1/Makefile] Error 127
ERROR: cat: Filepath: No such file or directory
cat: Srcfiles: No such file or directory
/bin/sh: line 2: cmake: command not found
make: *** [/public/home/kali/scratch/cesm/case/01x01_10y.GSWP3.230810.CESM2.2_002/Tools/Makefile:798: /public/home/kali/scratch/cesm/run/01x01_10y.GSWP3.230810.CESM2.2_002/bld/gnu/openmpi/nodebug/nothreads/mct/pio/pio1/Makefile] Error 127

Can anyone help me? Many thanks.
 

Attachments

  • config_batch.xml.txt
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  • config_compilers.xml.txt
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  • config_machines.txt
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  • pio.bldlog.txt
    6.4 KB · Views: 7
G

Gamling Dang

gamlingdang
New Member
jedwards said:
It's not being found - is it in the path?
Click to expand...
Hi, Jedwards.
I checked the CMake. CMake is in the path.
$ cmake --version
cmake version 3.22.1
CMake suite maintained and supported by Kitware (kitware.com/cmake).
$ which cmake
/usr/bin/cmake

I also used another simple script to test CMake, it worked well. Do you have any ideas? Thanks a lot.
 
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