Thank you for your answer @jedwards
I incorporated the variable prerun_script into the file in the case directory env_run.xml, see more details (searching for it here), as follows:
<entry id="PRERUN_SCRIPT">
<type>char</type>
<desc>External script to be run before model...
I'm glad you made progress by changing the RUN_TYPE!
Looking at your logs, I'm not sure what exactly is going on. One thing I see, though, is that the last file that was modified was actually the atmosphere log file:
atm.log.3727997.desched1.240306-112433
And it seems upset because:
FLDLST...
Hi jedwards,
Thanks for the suggestions. I tried creating a conda environment with the specific versions of pylint.
$ pylint --version
pylint 2.17.4
astroid 2.15.5
Python 3.8.18 | packaged by conda-forge | (default, Dec 23 2023, 17:21:28)
[GCC 12.3.0]
Yet the same errors (2) and (3) still...
Hi jedwards,
Thanks for the suggestions. Yes, we do have lmod on our server. I modified the part of configuration file ~/.cime/config_machines.xml to:
<init_path lang="perl">/usr/share/Modules/init/perl.pm</init_path>
<init_path...
Dear CESM forum,
I got an error: mpirun command could not be found when ./case.submit (res f19_g17 --compset B1850). The existing related posts seemed to be little help for me.
Details are as follows:
It was also mentioned that the. cpl *. r. *. nc file was missing, but I cannot understand...
Sorry, I should've replied earlier.
For reading data, POP typically reads a file on a single task and then broadcasts the content of the file out. You can see this in the source code, where only one task should enter the if (my_task == master_task) then block. The error I commented on above...
Hello everyone,
I am running a single point simulation using CLM5. After producing the surface date and forcing meteorological data, I submitted the simulation. However, it stops quickly and the "cesm.log.xxx" file shows:
...
NetCDF: Variable notfound
pio_support::pio_die:: myrank=...
Thank you for your reply.
I have in the config_compilers this entry:
<!-- ******************* MAHTI ********************* -->
<compiler MACH="mahti" COMPILER="gnu">
<CFLAGS>
<base> -std=gnu99 </base>
<append compile_threaded="true"> -fopenmp </append>
</CFLAGS>
<FFLAGS>...
..."modulecmd"? - I suggest looking through those first - and other threads you can find in a search like Search results for query: source "not found" (some of those are irrelevant, but some are relevant).
If the other threads don't help you with your problem, then please add more information...
Hello Everyone,
I want to use CESM2 climate model for my climate research but i had a problem. I created a case can be called "deneme_v2", but i had case.setup error i cant solve this problem can u help me please? Error message is :
(base) mmert@anafor1:~/CESM/cases/deneme_v2$ ./case.setup...
Hi, Thanks for opening this thread.
I am running fully coupled simulation (use B1850 compesite) with CESM1_2_2. The ocean tracer module is set to "iage ecosys" for this simulation. The control experiment has worked successfully for 1500 years. In the control simulation for the PI period, the...
Hello, could you please give me a demonstration of stream file description? I have also encountered similar problems. I would appreciate it very much if you can.
I'm hoping someone can help me with a port of CESM v.1.2.2.1 to my local institutions HPC. I have followed the instructions at https://www2.cesm.ucar.edu/models/cesm1.2/cesm/doc/usersguide/x1794.html and created the two new files for my machine (env_mach_specific.bunya and mkbatch.bunya) and...
Nonetheless, I am still curious, why I could build CESM2.2.0 but failed to build CESM2.1.3. For what its worth, the error reported in Porting error: sourcenotfound occurs while doing ./case.setup for both CESM2.1.3 and CESM2.2.0 in my case.
Thanks.
Hi @jedwards , I tried to install cesm.2.2.0. The same scripts/modules that were giving error (as mentioned above) with CESM.2.1.3 could build CESM2.2.0. However, the run fails. On a closer look, I realized I actually get the error during ./case.setup [Porting error: sourcenotfound]. Despite...
I'm porting iCESM1_2_0_1 on a new machine, and an error "cpl.log.220920-112559: No such file or directory" showed up when running a case with the component set of X.
The attached zip file includes the related config/machines files and a cesm.log file showing the error. I'm using Intel Fortran...
Dear CESM community,
I have been trying to port CESM 1.2.2 on a new machine (the Irene machine of the TGCC in France, in case anyone knows it).
I encounter an error during the build phase. I have been trying to solve this problem for more than 10 days, but now I am totally stuck. I would really...
Madam,
I created a regional grid which has two open boundaries. I placed the obc_segment data and specifications in MOM_input but the following error is coming. Can you please guide me to find the source of the error? Is it due to wrong obc file generation or anything else?
FATAL from PE...
Hi all:
I have the following problem with FCHIST compsets in CAM6-chem.
The cesm.log file shows:
"01: NetCDF: Invalid dimension ID or name
01: NetCDF: Invalid dimension ID or name
01: NetCDF: Invalid dimension ID or name
01: NetCDF: Invalid dimension ID or name
01: NetCDF: Invalid...
Hello Altuntas, I have the similar question, the error code as following:
Opened existing file
/public1/home/amduan/panzl/cesm-inputdata/atm/cam/dst/dst_source2x2tunedcam6-2x2-04062017.nc 262144
Opened existing file...
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