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  1. J

    Running single point CLM simulation but most the the output files shows zero value

    Thanks for the suggestion Keith. Actually I have added winter wheat in surface data Map and simulated winter wheat for global run and it worked fine. However, I implemented your suggestion to check if the problem is arriving due to winter wheat so I changed the surfacdata_map from winter wheat...
  2. J

    Running single point CLM simulation but most the the output files shows zero value

    I changed the user_nl_datm as: &shr_strdata_nml datamode = "CLMNCEP" domainfile = "/glade/work/jyotis/inputdata/1x1pt_CH-XIA/domain.lnd.1x1pt_CH-XIA_navy.220314.nc" dtlimit = 1.5, 1.5 fillalgo = "nn", "nn" fillmask = "nomask", "nomask" fillread = "NOT_SET", "NOT_SET" fillwrite =...
  3. J

    Running single point CLM simulation but most the the output files shows zero value

    I tried seting DATM_CLMNCEP_YR_ALIGN =2011 in env_run.xml and, streams = "datm.streams.txt.CLM1PT.CLM_USRDAT 2011 2011 2013", "datm.streams.txt.presaero.clim_2000 1 2000 2000", "datm.streams.txt.topo.observed 1 1 1" in user_nl_datm and submitted the job. It gives error message. Here is...
  4. M

    CESM ./case.build error

    Thu Nov 4 11:42:13 IST 2021 /Users/mahesh/cesm1_2_2/scripts/mycase/bld/gnu/mpich/nodebug/nothreads/mct.bldlog.211104-114211 setenv MCT_DIR /Users/mahesh/cesm1_2_2/models/utils/mct setenv LIBDIR /Users/mahesh/cesm1_2_2/scripts/mycase/bld/gnu/mpich/nodebug/nothreads setenv MCT_LIBDIR...
  5. V

    Changing Q10 in user_nl_clm

    Hi, I'm running PTCLM with the 2000_DATM%1PT_CLM50%BGC_SICE_SOCN_MOSART_SGLC_SWAV compset, and I want to change the Q10 value for frozen and unfrozen soils. I can change the q10 for frozen soil by adding froz_q10=newvalue to the end of my user_nl_clm file, but when I add Q10=newvalue (to...
  6. H

    case.build fail for CLM (fail at clm.buildlib)

    I am trying an out-of-box CLM run from the 2019 tutorial https://www.cgd.ucar.edu/events/2019/ctsm/files/practical1-lombardozzi.pdf These are the exact steps I took 1. Downloaded CLM5.0 from git as instructed git clone -b release-clm5.0 https://github.com/ESCOMP/ctsm.git clm5.0_2019tutorial cd...
  7. J

    Porting error: source not found

    This error: indicates that you have not configured the python interface to modules correctly. Double check the following paths from config_machines.xml
  8. J

    CESM 1_2_1 release version number different

    I can't access to the web..
  9. J

    CESM 1_2_1 release version number different

    Dear jedwards: I download the CESM 1_2_1 by svn and get the error as that "svn: warning: W200000: Error handling externals definition for 'models/utils/pio':" I have modified to "models/utils/pio https://github.com/NCAR/ParallelIO.git/tags/pio1_8_12/pio" in...
  10. G

    Problems porting CESM on local machine with CentOS 8

    Hello, I have some problems porting CESM to a local machine witch CentOS 8. Operating system is CentOS8. I have tried two compilers, Intel Parallelstudio 20up02 as well as GNU 8.3.1 in combination with OpenMPI 4.0.4, and created a machine for each of them. I built NetCDF from source; for...
  11. J

    Porting error: source not found

    Just for some more context, originally when I setup the model and got this error I had been using the sh shell but I then changed to bash using chsh -s /bin/bash, opened a new session and this made no difference to the source not found error. Thanks, I really appreciate the help!
  12. J

    Porting error: source not found

    The error in your CaseStatus.txt ERROR: Command: 'source /etc/profile.d/modules.sh && module list' failed with error 'b'/bin/sh: 1: source: not found'' from dir '/home/sebastian/CESM2/my_cesm_sandbox/cime/scripts/test88' seems like a big problem. What shell are you using? If you run the...
  13. J

    Porting error: source not found

    Hi, I am currently trying to port CTSM on a local linux machine with OS=Ubuntu 20.04 LTS. I have module environments installed and am using a gnu compiler (gcc 9.3.0) and openmpi/mpich. I have adapted the config_machines.xml and config_compilers.xml files and can create a case but when I attempt...
  14. Y

    ocn initialization. string too short; not enough room to read nc file

    Thanks jedwards, it works. I just increased the NTASKS of OCN. I don't know why but it works even without modifying the io_netcdf.F90 I meet another error "ERROR: bounding bracket for pH solution not found". Do you have any ideas?
  15. W

    CESM2.1.3 mpiexec_mpt error

    I just checked. The emission file is in the directory. Maybe it is no longer used by CESM2.1? Thank you for your help!
  16. sacks

    CESM2.1.3 mpiexec_mpt error

    It looks like the error here is in CAM, when trying to read the emissions file: airpl_src: NO and CO do not have external source --> no aircraft sources will b e applied chemini: after airpl_src on node 0 srf_emis_inti: n_emis_files = 9 (GETFIL): attempting to find...
  17. S

    configure: error: netcdf.mod not found in NETCDF_PATH/include

    Hi, I am using CESM version 1.1.2 to build the B20TRLENS compset. I have attached my config_machines.xml, config_compiler.xml and other machine-specific files. I am using the intel13 compiler with the following specs:- <compiler COMPILER="intel13"> <PNETCDF_PATH></PNETCDF_PATH>...
  18. V

    Problem while setting up a case

    Dear jedwards and dbailey, Thank you for the prompt reply. I solved the problem by using sudo apt-get install environment-modules. But now I have a different error which says source not found when i run case.setup . Please find the log file below. Thank you, Vinayak
  19. MrIgnition

    ERROR: RUN FAIL: in CLM5

    Thanks once again Oleson. The error has now been corrected. It was due to a type in the stream file specification. I however saw another error as shown in my cesm.log. file. the last few lines containing the error are hereby attached. NODE# NAME ( 0) jrc0673 NetCDF: Invalid dimension...
  20. M

    valgrind

    Thanks for the reply, Jim.  I followed your advice and added the module load for valgrind into env_mach_specific.xml, and now by doing a source .env_mach_specific.csh I can see that the valgrind module is indeed being loaded.  But I still get "valgrind: command not found" in the cesm log when I...
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