1751807240@qq_com
New Member
hello! there are some error when I am building the case. If anyone has any ideas for me to try, that would be greatly appreciated. [root@localhost test]# ./test.build------------------------------------------------------------------------- CESM BUILDNML SCRIPT STARTING - To prestage restarts, untar a restart.tar file into /scratch/bianqy/CESM1_2_2/case/test/runUse of qw(...) as parentheses is deprecated at /opt/code/models/drv/bld/build-namelist line 784. infile is /opt/code/scripts/test/Buildconf/cplconf/cesm_namelist CESM BUILDNML SCRIPT HAS FINISHED SUCCESSFULLY-------------------------------------------------------------------------------------------------------------------------------------------------- CESM PRESTAGE SCRIPT STARTING - Case input data directory, DIN_LOC_ROOT, is /scratch/bianqy/inputdata/CESM1_2_2/inputdata - Checking the existence of input datasets in DIN_LOC_ROOT CESM PRESTAGE SCRIPT HAS FINISHED SUCCESSFULLY-------------------------------------------------------------------------------------------------------------------------------------------------- CESM BUILDEXE SCRIPT STARTINGrm: No match. COMPILER is intel - Build Libraries: mct gptl pio csm_share Sat Apr 15 10:11:16 CST 2017 /scratch/bianqy/CESM1_2_2/case/test/bld/intel/mpich/nodebug/nothreads/mct.bldlog.170415-101115ERROR: buildlib.mct failed, see /scratch/bianqy/CESM1_2_2/case/test/bld/intel/mpich/nodebug/nothreads/mct.bldlog.170415-101115ERROR: cat /scratch/bianqy/CESM1_2_2/case/test/bld/intel/mpich/nodebug/nothreads/mct.bldlog.170415-101115 [root@localhost test]# cat /scratch/bianqy/CESM1_2_2/case/test/bld/intel/mpich/nodebug/nothreads/mct.bldlog.170415-101115Sat Apr 15 10:11:16 CST 2017 /scratch/bianqy/CESM1_2_2/case/test/bld/intel/mpich/nodebug/nothreads/mct.bldlog.170415-101115setenv MCT_DIR /opt/code/models/utils/mctsetenv LIBDIR /scratch/bianqy/CESM1_2_2/case/test/bld/intel/mpich/nodebug/nothreadssetenv MCT_LIBDIR /scratch/bianqy/CESM1_2_2/case/test/bld/intel/mpich/nodebug/nothreads/mctecho MCT_LIBDIR /scratch/bianqy/CESM1_2_2/case/test/bld/intel/mpich/nodebug/nothreads/mctMCT_LIBDIR /scratch/bianqy/CESM1_2_2/case/test/bld/intel/mpich/nodebug/nothreads/mctcd /scratch/bianqy/CESM1_2_2/case/test/bld/intel/mpich/nodebug/nothreads/mctecho Copying source to CCSM EXEROOT...Copying source to CCSM EXEROOT...cp /opt/code/models/utils/mct/Makefile .mkdir mctmkdir: cannot create directory ‘mct’: File existscp /opt/code/models/utils/mct/mct/Makefile mctmkdir mpeumkdir: cannot create directory ‘mpeu’: File existscp /opt/code/models/utils/mct/mpeu/Makefile mpeumkdir mpi-serialmkdir: cannot create directory ‘mpi-serial’: File existscp /opt/code/models/utils/mct/mpi-serial/Makefile mpi-serialset runconf = 0set runclean = 0echo Running configure...Running configure...echo for OS=LINUX MACH=saberfor OS=LINUX MACH=sabergmake -f /opt/code/scripts/test/Tools/Makefile /scratch/bianqy/CESM1_2_2/case/test/bld/intel/mpich/nodebug/nothreads/mct/Makefile.confSHAREDLIBROOT |/scratch/bianqy/CESM1_2_2/case/test/bld| SHAREDPATH |/scratch/bianqy/CESM1_2_2/case/test/bld/intel/mpich/nodebug/nothreads|checking whether the C compiler works... yeschecking for C compiler default output file name... a.outchecking for suffix of executables... checking whether we are cross compiling... configure: error: in `/scratch/bianqy/CESM1_2_2/case/test/bld/intel/mpich/nodebug/nothreads/mct':configure: error: cannot run C compiled programs.If you meant to cross compile, use `--host'.See `config.log' for more detailsgmake: *** [/scratch/bianqy/CESM1_2_2/case/test/bld/intel/mpich/nodebug/nothreads/mct/Makefile.conf] Error 1if ( 0 == 1 ) thencp -p Makefile.conf Makefile.conf.oldcp: cannot stat ‘Makefile.conf’: No such file or directorygmakeMakefile:4: Makefile.conf: No such file or directorygmake: *** No rule to make target `Makefile.conf'. Stop.exit 1 [root@localhost mct]# cat config.log This file contains any messages produced by compilers whilerunning configure, to aid debugging if configure makes a mistake. It was created by MCT configure 2.8, which wasgenerated by GNU Autoconf 2.69. Invocation command line was $ /opt/code/models/utils/mct/configure CC=icc FC=ifort MPICC=mpicc MPIFC=mpif90 FCFLAGS=-fp-model source -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -O2 -free -I. -I/scratch/bianqy/CESM1_2_2/case/test/bld/intel/mpich/nodebug/nothreads/include -I/scratch/bianqy/CESM1_2_2/case/test/bld/intel/mpich/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/software/nectdf4/include -I/scratch/bianqy/CESM1_2_2/case/test/bld/intel/mpich/nodebug/nothreads/include -I/opt/code/models/csm_share/shr CPPDEFS= -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLINUX -DCPRINTEL -DHAVE_SLASHPROC CFLAGS=-O2 -fp-model precise -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLINUX -DCPRINTEL -DHAVE_SLASHPROC -I.. -I. -I/scratch/bianqy/CESM1_2_2/case/test/bld/intel/mpich/nodebug/nothreads/include -I/scratch/bianqy/CESM1_2_2/case/test/bld/intel/mpich/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/software/nectdf4/include -I/scratch/bianqy/CESM1_2_2/case/test/bld/intel/mpich/nodebug/nothreads/include -I/opt/code/models/csm_share/shr NETCDF_PATH=/opt/software/netcdf4 LDFLAGS=-L/opt/software/netcdf4/lib LIBS=-L/opt/software/netcdf4/lib -lnetcdf -lnetcdff --srcdir /opt/code/models/utils/mct ## --------- #### Platform. #### --------- ## hostname = localhost.localdomainuname -m = x86_64uname -r = 3.10.0-514.10.2.el7.x86_64uname -s = Linuxuname -v = #1 SMP Fri Mar 3 00:04:05 UTC 2017 /usr/bin/uname -p = x86_64/bin/uname -X = unknown /bin/arch = x86_64/usr/bin/arch -k = unknown/usr/convex/getsysinfo = unknown/usr/bin/hostinfo = unknown/bin/machine = unknown/usr/bin/oslevel = unknown/bin/universe = unknown PATH: /opt/intel/binPATH: /opt/software/netcdf4/binPATH: {/opt/software/hdf5}/binPATH: /usr/local/sbinPATH: /usr/local/binPATH: /usr/sbinPATH: /usr/binPATH: /root/bin ## ----------- #### Core tests. #### ----------- ## configure:2358: checking for C compiler versionconfigure:2367: icc --version >&5icc (ICC) 17.0.1 20161005Copyright (C) 1985-2016 Intel Corporation. All rights reserved. configure:2378: $? = 0configure:2367: icc -v >&5icc version 17.0.1 (gcc version 4.8.5 compatibility)configure:2378: $? = 0configure:2367: icc -V >&5Intel(R) C Intel(R) 64 Compiler for applications running on Intel(R) 64, Version 17.0.1.132 Build 20161005Copyright (C) 1985-2016 Intel Corporation. All rights reserved. configure:2378: $? = 0configure:2367: icc -qversion >&5icc: command line warning #10006: ignoring unknown option '-qversion'icc: command line error: no files specified; for help type "icc -help"configure:2378: $? = 1configure:2398: checking whether the C compiler worksconfigure:2420: icc -O2 -fp-model precise -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLINUX -DCPRINTEL -DHAVE_SLASHPROC -I.. -I. -I/scratch/bianqy/CESM1_2_2/case/test/bld/intel/mpich/nodebug/nothreads/include -I/scratch/bianqy/CESM1_2_2/case/test/bld/intel/mpich/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/software/nectdf4/include -I/scratch/bianqy/CESM1_2_2/case/test/bld/intel/mpich/nodebug/nothreads/include -I/opt/code/models/csm_share/shr -I/opt/software/netcdf4/include -L/opt/software/netcdf4/lib conftest.c -L/opt/software/netcdf4/lib -lnetcdf -lnetcdff >&5configure:2424: $? = 0configure:2472: result: yesconfigure:2475: checking for C compiler default output file nameconfigure:2477: result: a.outconfigure:2483: checking for suffix of executablesconfigure:2490: icc -o conftest -O2 -fp-model precise -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLINUX -DCPRINTEL -DHAVE_SLASHPROC -I.. -I. -I/scratch/bianqy/CESM1_2_2/case/test/bld/intel/mpich/nodebug/nothreads/include -I/scratch/bianqy/CESM1_2_2/case/test/bld/intel/mpich/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/software/nectdf4/include -I/scratch/bianqy/CESM1_2_2/case/test/bld/intel/mpich/nodebug/nothreads/include -I/opt/code/models/csm_share/shr -I/opt/software/netcdf4/include -L/opt/software/netcdf4/lib conftest.c -L/opt/software/netcdf4/lib -lnetcdf -lnetcdff >&5configure:2494: $? = 0configure:2516: result: configure:2538: checking whether we are cross compilingconfigure:2546: icc -o conftest -O2 -fp-model precise -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLINUX -DCPRINTEL -DHAVE_SLASHPROC -I.. -I. -I/scratch/bianqy/CESM1_2_2/case/test/bld/intel/mpich/nodebug/nothreads/include -I/scratch/bianqy/CESM1_2_2/case/test/bld/intel/mpich/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/software/nectdf4/include -I/scratch/bianqy/CESM1_2_2/case/test/bld/intel/mpich/nodebug/nothreads/include -I/opt/code/models/csm_share/shr -I/opt/software/netcdf4/include -L/opt/software/netcdf4/lib conftest.c -L/opt/software/netcdf4/lib -lnetcdf -lnetcdff >&5configure:2550: $? = 0configure:2557: ./conftest./conftest: error while loading shared libraries: libnetcdf.so.11: cannot open shared object file: No such file or directoryconfigure:2561: $? = 127configure:2568: error: in `/scratch/bianqy/CESM1_2_2/case/test/bld/intel/mpich/nodebug/nothreads/mct':configure:2570: error: cannot run C compiled programs.If you meant to cross compile, use `--host'.See `config.log' for more details ## ---------------- #### Cache variables. #### ---------------- ## ac_cv_env_AR_set=ac_cv_env_AR_value=ac_cv_env_BABELROOT_set=ac_cv_env_BABELROOT_value=ac_cv_env_BIT64_set=ac_cv_env_BIT64_value=ac_cv_env_CC_set=setac_cv_env_CC_value='icc 'ac_cv_env_CFLAGS_set=setac_cv_env_CFLAGS_value='-O2 -fp-model precise -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLINUX -DCPRINTEL -DHAVE_SLASHPROC -I.. -I. -I/scratch/bianqy/CESM1_2_2/case/test/bld/intel/mpich/nodebug/nothreads/include -I/scratch/bianqy/CESM1_2_2/case/test/bld/intel/mpich/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/software/nectdf4/include -I/scratch/bianqy/CESM1_2_2/case/test/bld/intel/mpich/nodebug/nothreads/include -I/opt/code/models/csm_share/shr'ac_cv_env_COMPILER_ROOT_set=ac_cv_env_COMPILER_ROOT_value=ac_cv_env_CPPFLAGS_set=setac_cv_env_CPPFLAGS_value=-I/opt/software/netcdf4/includeac_cv_env_CPP_set=ac_cv_env_CPP_value=ac_cv_env_DEBUG_set=setac_cv_env_DEBUG_value=FALSEac_cv_env_ENDIAN_set=ac_cv_env_ENDIAN_value=ac_cv_env_FCFLAGS_set=setac_cv_env_FCFLAGS_value='-fp-model source -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -O2 -free -I. -I/scratch/bianqy/CESM1_2_2/case/test/bld/intel/mpich/nodebug/nothreads/include -I/scratch/bianqy/CESM1_2_2/case/test/bld/intel/mpich/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/software/nectdf4/include -I/scratch/bianqy/CESM1_2_2/case/test/bld/intel/mpich/nodebug/nothreads/include -I/opt/code/models/csm_share/shr'ac_cv_env_FC_set=setac_cv_env_FC_value='ifort 'ac_cv_env_FORT_SIZE_set=ac_cv_env_FORT_SIZE_value=ac_cv_env_FPPFLAGS_set=ac_cv_env_FPPFLAGS_value=ac_cv_env_FPP_set=ac_cv_env_FPP_value=ac_cv_env_INCLUDEFLAG_set=ac_cv_env_INCLUDEFLAG_value=ac_cv_env_INCLUDEPATH_set=ac_cv_env_INCLUDEPATH_value=ac_cv_env_LDFLAGS_set=setac_cv_env_LDFLAGS_value=-L/opt/software/netcdf4/libac_cv_env_LIBS_set=setac_cv_env_LIBS_value='-L/opt/software/netcdf4/lib -lnetcdf -lnetcdff'ac_cv_env_MPIFC_set=setac_cv_env_MPIFC_value='mpif90 'ac_cv_env_MPIHEADER_set=ac_cv_env_MPIHEADER_value=ac_cv_env_MPILIBS_set=setac_cv_env_MPILIBS_value=mpichac_cv_env_OPT_set=ac_cv_env_OPT_value=ac_cv_env_PROGFCFLAGS_set=ac_cv_env_PROGFCFLAGS_value=ac_cv_env_RANLIB_set=ac_cv_env_RANLIB_value=ac_cv_env_REAL8_set=ac_cv_env_REAL8_value=ac_cv_env_build_alias_set=ac_cv_env_build_alias_value=ac_cv_env_host_alias_set=ac_cv_env_host_alias_value=ac_cv_env_target_alias_set=ac_cv_env_target_alias_value= ## ----------------- #### Output variables. #### ----------------- ## AR=''BABELROOT=''BIT64=''CC='icc 'CFLAGS='-O2 -fp-model precise -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLINUX -DCPRINTEL -DHAVE_SLASHPROC -I.. -I. -I/scratch/bianqy/CESM1_2_2/case/test/bld/intel/mpich/nodebug/nothreads/include -I/scratch/bianqy/CESM1_2_2/case/test/bld/intel/mpich/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/software/nectdf4/include -I/scratch/bianqy/CESM1_2_2/case/test/bld/intel/mpich/nodebug/nothreads/include -I/opt/code/models/csm_share/shr'COMPILER_ROOT=''CPP=''CPPDEFS=' -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLINUX -DCPRINTEL -DHAVE_SLASHPROC'CPPFLAGS='-I/opt/software/netcdf4/include'CRULE=''DEBUG='FALSE'DEFS=''ECHO_C=''ECHO_N='-n'ECHO_T=''EGREP=''ENDIAN=''EXEEXT=''FC='ifort 'FCFLAGS='-fp-model source -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -O2 -free -I. -I/scratch/bianqy/CESM1_2_2/case/test/bld/intel/mpich/nodebug/nothreads/include -I/scratch/bianqy/CESM1_2_2/case/test/bld/intel/mpich/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/software/nectdf4/include -I/scratch/bianqy/CESM1_2_2/case/test/bld/intel/mpich/nodebug/nothreads/include -I/opt/code/models/csm_share/shr'FCFLAGS_F90=''FCFLAGS_F=''FCLIBS=''FC_DEFINE=''FORT_SIZE=''FPP=''FPPFLAGS=''GREP=''INCLUDEFLAG=''INCLUDEPATH=''LDFLAGS='-L/opt/software/netcdf4/lib'LIBOBJS=''LIBS='-L/opt/software/netcdf4/lib -lnetcdf -lnetcdff'LTLIBOBJS=''MPIFC='mpif90 'MPIHEADER=''MPILIBS='mpich'MPISERPATH=''OBJEXT=''OPT=''PACKAGE_BUGREPORT=''PACKAGE_NAME='MCT'PACKAGE_STRING='MCT 2.8'PACKAGE_TARNAME='mct'PACKAGE_URL=''PACKAGE_VERSION='2.8'PATH_SEPARATOR=':'PROGFCFLAGS=''PYTHON=''PYTHONOPTS=''RANLIB=''REAL8=''SHELL='/bin/sh'ac_ct_CC=''ac_ct_FC=''bindir='${exec_prefix}/bin'build_alias=''datadir='${datarootdir}'datarootdir='${prefix}/share'docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'dvidir='${docdir}'exec_prefix='NONE'host_alias=''htmldir='${docdir}'includedir='${prefix}/include'infodir='${datarootdir}/info'libdir='${exec_prefix}/lib'libexecdir='${exec_prefix}/libexec'localedir='${datarootdir}/locale'localstatedir='${prefix}/var'mandir='${datarootdir}/man'oldincludedir='/usr/include'pdfdir='${docdir}'prefix='NONE'program_transform_name='s,x,x,'psdir='${docdir}'sbindir='${exec_prefix}/sbin'sharedstatedir='${prefix}/com'sysconfdir='${prefix}/etc'target_alias='' ## ----------- #### confdefs.h. #### ----------- ## /* confdefs.h */#define PACKAGE_NAME "MCT"#define PACKAGE_TARNAME "mct"#define PACKAGE_VERSION "2.8"#define PACKAGE_STRING "MCT 2.8"#define PACKAGE_BUGREPORT ""#define PACKAGE_URL "" configure: exit 1