Building on Ubuntu - compiling fails

[florianlosch@uni-bonn_de]

I'm trying to build cesm_1.2.2 on my Ubuntu home system.
Im following the porting procedure from the documentation. When calling ./test1.build after

CESM BUILDEXE SCRIPT STARTING
rm: No match.
COMPILER is gnu
- Build Libraries: mct gptl pio csm_share
the error
ERROR: buildlib.csm_share failed, see [...]

occurs. In the log-file I find the error:
/home/florian/uni/clm/cesm/models/drv/shr/seq_io_mod.F90:1170.58:

rcode = pio_def_dim(cpl_io_file,'time',PIO_UNLIMITED,dimid(1))
1
Error: Symbol 'pio_unlimited' at (1) has no IMPLICIT type

For the gnu-compiler I have the option --fno-range-check enabled.

Thank you for your help :-)

 

[jedwards]

I've seen this error when the model couldn't find either netcdf or pnetcdf prior to building PIO - look in the pio bldlog to see if this is the case and correct it if so.

 

[florianlosch@uni-bonn_de]

I checked all the log files, there are no other warnings/errors. Nothing about netcdf either. The NETCDF_PATH, PNETCDF_PATH and LIB_PNETCDF are correctly set in the Macros file.

 

[jedwards]

Please attach the pio bldlog which you will find in the bld directory.   PIO_UNLIMITED is defined in PIO and should be in the pio.mod module.

 

[florianlosch@uni-bonn_de]

hope this helps...
I attached the edited config-files too.

 

[jedwards]

Hi, The pio bldlog you provided was produced when pio was already built and so contains no output.    Do a *.clean_build all then build again and send that one.  But I see a couple of things that need to be changed first.   In the Macros file you have CONFIG_ARGS:=PNETCDF_PIO   this is wrong - probably came from config_compilers.xml You also have SLIBS+=# USERDEFINED $(shell $(NETCDF_PATH)/bin/nc-config --flibs)  you need to remove the # USERDEFINED and depending on your netcdf version you may need to modify this further.  The end result should be a list of libraries needed to link netcdf.   

 

[florianlosch@uni-bonn_de]

Hi,thank you, that was the right idea.
I had to download/compile the fortran-libraries for netcdf too. And add setenv LD_LIBRARY_PATH [...]  in the mkbatch file.

Thanks and best regards :-)