wqywgq123@126_com
New Member
Hi All, I'm trying to port the new CESM2.1.1 release to our cluster but the case.build step got stuck with a strange problem with cism.buildlib and ww.buildlib failed. Below are some information on our cluster and environment Thank you very much for any reply.
[sysu_qhyang_7@lon21%tianhe2-H 4case_gnu]$ ./case.buildBuilding case in directory /BIGDATA1/sysu_qhyang_7/models/my_cesm_sandbox1/rundir/4case_gnusharedlib_only is Falsemodel_only is FalseSetting resource.RLIMIT_STACK to -1 from (-1, -1)Generating component namelists as part of buildCreating component namelists Calling /BIGDATA1/sysu_qhyang_7/models/my_cesm_sandbox1/components/cam//cime_config/buildnml ...calling cam buildcpp to set build time optionsCAM namelist copy: file1 /BIGDATA1/sysu_qhyang_7/models/my_cesm_sandbox1/rundir/4case_gnu/Buildconf/camconf/atm_in file2 /BIGDATA1/sysu_qhyang_7/output/cesm211/4case_gnu/run/atm_in Calling /BIGDATA1/sysu_qhyang_7/models/my_cesm_sandbox1/components/clm//cime_config/buildnml Calling /BIGDATA1/sysu_qhyang_7/models/my_cesm_sandbox1/components/cice//cime_config/buildnml ...calling cice buildcpp to set build time options Calling /BIGDATA1/sysu_qhyang_7/models/my_cesm_sandbox1/components/pop//cime_config/buildnml ...calling pop buildcpp to set build time options Calling /BIGDATA1/sysu_qhyang_7/models/my_cesm_sandbox1/components/mosart//cime_config/buildnml Running /BIGDATA1/sysu_qhyang_7/models/my_cesm_sandbox1/components/cism//cime_config/buildnml Calling /BIGDATA1/sysu_qhyang_7/models/my_cesm_sandbox1/components/ww3//cime_config/buildnml Calling /BIGDATA1/sysu_qhyang_7/models/my_cesm_sandbox1/cime/src/components/stub_comps/sesp/cime_config/buildnml Calling /BIGDATA1/sysu_qhyang_7/models/my_cesm_sandbox1/cime/src/drivers/mct/cime_config/buildnmlFinished creating component namelistsBuilding gptl with output to file /BIGDATA1/sysu_qhyang_7/output/cesm211/4case_gnu/bld/gptl.bldlog.190906-111427 Calling /BIGDATA1/sysu_qhyang_7/models/my_cesm_sandbox1/cime/src/build_scripts/buildlib.gptlComponent gptl build complete with 2 warningsBuilding mct with output to file /BIGDATA1/sysu_qhyang_7/output/cesm211/4case_gnu/bld/mct.bldlog.190906-111427 Calling /BIGDATA1/sysu_qhyang_7/models/my_cesm_sandbox1/cime/src/build_scripts/buildlib.mctBuilding pio with output to file /BIGDATA1/sysu_qhyang_7/output/cesm211/4case_gnu/bld/pio.bldlog.190906-111427 Calling /BIGDATA1/sysu_qhyang_7/models/my_cesm_sandbox1/cime/src/build_scripts/buildlib.pioBuilding csm_share with output to file /BIGDATA1/sysu_qhyang_7/output/cesm211/4case_gnu/bld/csm_share.bldlog.190906-111427 Calling /BIGDATA1/sysu_qhyang_7/models/my_cesm_sandbox1/cime/src/build_scripts/buildlib.csm_shareComponent csm_share build complete with 2 warnings - Building clm4_5/clm5_0 LibraryBuilding lnd with output to /BIGDATA1/sysu_qhyang_7/output/cesm211/4case_gnu/bld/lnd.bldlog.190906-111427Component lnd build complete with 1 warningsclm built in 277.841641 secondsBuilding atm with output to /BIGDATA1/sysu_qhyang_7/output/cesm211/4case_gnu/bld/atm.bldlog.190906-111427Building ice with output to /BIGDATA1/sysu_qhyang_7/output/cesm211/4case_gnu/bld/ice.bldlog.190906-111427Building ocn with output to /BIGDATA1/sysu_qhyang_7/output/cesm211/4case_gnu/bld/ocn.bldlog.190906-111427Building rof with output to /BIGDATA1/sysu_qhyang_7/output/cesm211/4case_gnu/bld/rof.bldlog.190906-111427Building glc with output to /BIGDATA1/sysu_qhyang_7/output/cesm211/4case_gnu/bld/glc.bldlog.190906-111427Building wav with output to /BIGDATA1/sysu_qhyang_7/output/cesm211/4case_gnu/bld/wav.bldlog.190906-111427Building esp with output to /BIGDATA1/sysu_qhyang_7/output/cesm211/4case_gnu/bld/esp.bldlog.190906-111427cism built in 39.181477 secondsComponent wav build complete with 2 warningsww built in 39.224417 secondsComponent rof build complete with 1 warningssesp built in 88.945404 secondsmosart built in 88.946884 secondscice built in 178.935173 secondsComponent ocn build complete with 2 warningsComponent atm build complete with 1 warningspop built in 596.666549 secondscam built in 596.675113 secondsERROR: BUILD FAIL: cism.buildlib failed, cat /BIGDATA1/sysu_qhyang_7/output/cesm211/4case_gnu/bld/glc.bldlog.190906-111427BUILD FAIL: ww.buildlib failed, cat /BIGDATA1/sysu_qhyang_7/output/cesm211/4case_gnu/bld/wav.bldlog.190906-111427
[sysu_qhyang_7@lon21%tianhe2-H 4case_gnu]$ ./case.buildBuilding case in directory /BIGDATA1/sysu_qhyang_7/models/my_cesm_sandbox1/rundir/4case_gnusharedlib_only is Falsemodel_only is FalseSetting resource.RLIMIT_STACK to -1 from (-1, -1)Generating component namelists as part of buildCreating component namelists Calling /BIGDATA1/sysu_qhyang_7/models/my_cesm_sandbox1/components/cam//cime_config/buildnml ...calling cam buildcpp to set build time optionsCAM namelist copy: file1 /BIGDATA1/sysu_qhyang_7/models/my_cesm_sandbox1/rundir/4case_gnu/Buildconf/camconf/atm_in file2 /BIGDATA1/sysu_qhyang_7/output/cesm211/4case_gnu/run/atm_in Calling /BIGDATA1/sysu_qhyang_7/models/my_cesm_sandbox1/components/clm//cime_config/buildnml Calling /BIGDATA1/sysu_qhyang_7/models/my_cesm_sandbox1/components/cice//cime_config/buildnml ...calling cice buildcpp to set build time options Calling /BIGDATA1/sysu_qhyang_7/models/my_cesm_sandbox1/components/pop//cime_config/buildnml ...calling pop buildcpp to set build time options Calling /BIGDATA1/sysu_qhyang_7/models/my_cesm_sandbox1/components/mosart//cime_config/buildnml Running /BIGDATA1/sysu_qhyang_7/models/my_cesm_sandbox1/components/cism//cime_config/buildnml Calling /BIGDATA1/sysu_qhyang_7/models/my_cesm_sandbox1/components/ww3//cime_config/buildnml Calling /BIGDATA1/sysu_qhyang_7/models/my_cesm_sandbox1/cime/src/components/stub_comps/sesp/cime_config/buildnml Calling /BIGDATA1/sysu_qhyang_7/models/my_cesm_sandbox1/cime/src/drivers/mct/cime_config/buildnmlFinished creating component namelistsBuilding gptl with output to file /BIGDATA1/sysu_qhyang_7/output/cesm211/4case_gnu/bld/gptl.bldlog.190906-111427 Calling /BIGDATA1/sysu_qhyang_7/models/my_cesm_sandbox1/cime/src/build_scripts/buildlib.gptlComponent gptl build complete with 2 warningsBuilding mct with output to file /BIGDATA1/sysu_qhyang_7/output/cesm211/4case_gnu/bld/mct.bldlog.190906-111427 Calling /BIGDATA1/sysu_qhyang_7/models/my_cesm_sandbox1/cime/src/build_scripts/buildlib.mctBuilding pio with output to file /BIGDATA1/sysu_qhyang_7/output/cesm211/4case_gnu/bld/pio.bldlog.190906-111427 Calling /BIGDATA1/sysu_qhyang_7/models/my_cesm_sandbox1/cime/src/build_scripts/buildlib.pioBuilding csm_share with output to file /BIGDATA1/sysu_qhyang_7/output/cesm211/4case_gnu/bld/csm_share.bldlog.190906-111427 Calling /BIGDATA1/sysu_qhyang_7/models/my_cesm_sandbox1/cime/src/build_scripts/buildlib.csm_shareComponent csm_share build complete with 2 warnings - Building clm4_5/clm5_0 LibraryBuilding lnd with output to /BIGDATA1/sysu_qhyang_7/output/cesm211/4case_gnu/bld/lnd.bldlog.190906-111427Component lnd build complete with 1 warningsclm built in 277.841641 secondsBuilding atm with output to /BIGDATA1/sysu_qhyang_7/output/cesm211/4case_gnu/bld/atm.bldlog.190906-111427Building ice with output to /BIGDATA1/sysu_qhyang_7/output/cesm211/4case_gnu/bld/ice.bldlog.190906-111427Building ocn with output to /BIGDATA1/sysu_qhyang_7/output/cesm211/4case_gnu/bld/ocn.bldlog.190906-111427Building rof with output to /BIGDATA1/sysu_qhyang_7/output/cesm211/4case_gnu/bld/rof.bldlog.190906-111427Building glc with output to /BIGDATA1/sysu_qhyang_7/output/cesm211/4case_gnu/bld/glc.bldlog.190906-111427Building wav with output to /BIGDATA1/sysu_qhyang_7/output/cesm211/4case_gnu/bld/wav.bldlog.190906-111427Building esp with output to /BIGDATA1/sysu_qhyang_7/output/cesm211/4case_gnu/bld/esp.bldlog.190906-111427cism built in 39.181477 secondsComponent wav build complete with 2 warningsww built in 39.224417 secondsComponent rof build complete with 1 warningssesp built in 88.945404 secondsmosart built in 88.946884 secondscice built in 178.935173 secondsComponent ocn build complete with 2 warningsComponent atm build complete with 1 warningspop built in 596.666549 secondscam built in 596.675113 secondsERROR: BUILD FAIL: cism.buildlib failed, cat /BIGDATA1/sysu_qhyang_7/output/cesm211/4case_gnu/bld/glc.bldlog.190906-111427BUILD FAIL: ww.buildlib failed, cat /BIGDATA1/sysu_qhyang_7/output/cesm211/4case_gnu/bld/wav.bldlog.190906-111427