Just tested again and it's working for me, here is the output I see from command
./check_input_data --download, do you see something similar?
./check_input_data --download
Setting resource.RLIMIT_STACK to -1 from (307200000, -1)
Loading input file list: 'Buildconf/cpl.input_data_list'
Model cpl missing file mesh_mask = '/glade/scratch/jedwards/id1/share/meshes/gx1v6_090205_ESMFmesh.nc'
Model cpl missing file rof2ocn_liq_rmapname = '/glade/scratch/jedwards/id1/cpl/gridmaps/rx1/map_rx1_to_gx1v6_nn_open_ocean_nnsm_e1000r300_marginal_sea_170503.nc'
Model cpl missing file rof2ocn_ice_rmapname = '/glade/scratch/jedwards/id1/cpl/gridmaps/rx1/map_rx1_to_gx1v6_nnsm_e1000r300_170503.nc'
Model cpl missing file mesh_atm = '/glade/scratch/jedwards/id1/share/meshes/fv1.9x2.5_141008_ESMFmesh.nc'
Model cpl missing file mesh_ice = '/glade/scratch/jedwards/id1/share/meshes/gx1v6_090205_ESMFmesh.nc'
Model cpl missing file mesh_ocn = '/glade/scratch/jedwards/id1/share/meshes/gx1v6_090205_ESMFmesh.nc'
Model cpl missing file mesh_rof = '/glade/scratch/jedwards/id1/share/meshes/rx1_nomask_181022_ESMFmesh.nc'
Loading input file list: 'Buildconf/datm.input_data_list'
Model datm missing file model_meshfile = '/glade/scratch/jedwards/id1/share/meshes/fv1.9x2.5_141008_ESMFmesh.nc'
Model datm missing file model_maskfile = '/glade/scratch/jedwards/id1/share/meshes/fv1.9x2.5_141008_ESMFmesh.nc'
Model datm missing file factorfn_data = '/glade/scratch/jedwards/id1/atm/datm7/CORE2/COREv2.correction_factors.T62.121007.nc'
Model datm missing file factorfn_mesh = '/glade/scratch/jedwards/id1/share/meshes/T62_040121_ESMFmesh_c20190714.nc'
Model datm missing file mesh = '/glade/scratch/jedwards/id1/share/meshes/T62_040121_ESMFmesh_c20190714.nc'
Model datm missing file file1 = '/glade/scratch/jedwards/id1/atm/datm7/NYF/nyf.giss.T62.051007.nc'
Model datm missing file file1 = '/glade/scratch/jedwards/id1/atm/datm7/NYF/nyf.gxgxs.T62.051007.nc'
Model datm missing file file1 = '/glade/scratch/jedwards/id1/atm/datm7/NYF/nyf.ncep.T62.050923.nc'
Loading input file list: 'Buildconf/drof.input_data_list'
Model drof missing file model_meshfile = '/glade/scratch/jedwards/id1/share/meshes/rx1_nomask_181022_ESMFmesh.nc'
Model drof missing file model_maskfile = '/glade/scratch/jedwards/id1/share/meshes/rx1_nomask_181022_ESMFmesh.nc'
Model drof missing file mesh = '/glade/scratch/jedwards/id1/lnd/dlnd7/RX1/runoff.daitren.annual_ESMFmesh_120520.nc'
Model drof missing file file1 = '/glade/scratch/jedwards/id1/lnd/dlnd7/RX1/runoff.daitren.annual.20190226.nc'
Loading input file list: 'Buildconf/dice.input_data_list'
Model dice missing file model_meshfile = '/glade/scratch/jedwards/id1/share/meshes/gx1v6_090205_ESMFmesh.nc'
Model dice missing file model_maskfile = '/glade/scratch/jedwards/id1/share/meshes/gx1v6_090205_ESMFmesh.nc'
Model dice missing file mesh = '/glade/scratch/jedwards/id1/ice/dice7/SSMI/ssmi.ifrac.0.5x0.5_ESMFmesh_120520.nc'
Model dice missing file file1 = '/glade/scratch/jedwards/id1/ice/dice7/SSMI/ssmi_ifrac.clim.x0.5.090319.nc'
Loading input file list: 'Buildconf/docn.input_data_list'
Model docn missing file model_meshfile = '/glade/scratch/jedwards/id1/share/meshes/gx1v6_090205_ESMFmesh.nc'
Model docn missing file model_maskfile = '/glade/scratch/jedwards/id1/share/meshes/gx1v6_090205_ESMFmesh.nc'
Model docn missing file mesh = '/glade/scratch/jedwards/id1/atm/cam/sst/sst_HadOIBl_bc_1x1_clim_c101029_ESMFmesh_120520.nc'
Model docn missing file file1 = '/glade/scratch/jedwards/id1/atm/cam/sst/sst_HadOIBl_bc_1x1_clim_c101029.nc'
Client protocol gftp not enabled
Using protocol wget with user anonymous and passwd
user@example.edu
Trying to download file: '../inputdata_checksum.dat' to path '/glade/scratch/jedwards/SMS_Ln9_P1.f19_g16_rx1.A.cheyenne_intel.20220104_162313_xqi0a1/run/inputdata_checksum.dat.raw' using WGET protocol.
SUCCESS
Using protocol ftp with user anonymous and passwd
user@example.edu
server address ftp.cgd.ucar.edu root path cesm/inputdata
Trying to download file: '../inputdata_checksum.dat' to path '/glade/scratch/jedwards/SMS_Ln9_P1.f19_g16_rx1.A.cheyenne_intel.20220104_162313_xqi0a1/run/inputdata_checksum.dat.raw' using FTP protocol.
Using protocol svn with user and passwd
Client protocol None not enabled
Checking server ftp://gridanon.cgd.ucar.edu:2811/cesm/inputdata/ with protocol gftp
Setting resource.RLIMIT_STACK to -1 from (-1, -1)
Client protocol gftp not enabled
Checking server ftp://ftp.cgd.ucar.edu/cesm/inputdata/ with protocol wget
Setting resource.RLIMIT_STACK to -1 from (-1, -1)
Using protocol wget with user anonymous and passwd
user@example.edu
Loading input file list: 'Buildconf/cpl.input_data_list'
Model cpl missing file mesh_mask = '/glade/scratch/jedwards/id1/share/meshes/gx1v6_090205_ESMFmesh.nc'
Trying to download file: 'share/meshes/gx1v6_090205_ESMFmesh.nc' to path '/glade/scratch/jedwards/id1/share/meshes/gx1v6_090205_ESMFmesh.nc' using WGET protocol.
SUCCESS