cism.buildlib failed for CESM2.1.4 on Derecho

[jhu279]

Hi, I am following through the 2023 CESM tutorial and using realease-cesm2.1.4 version, when I want to build the case I get failed with CISM, the error message is as follows.

ERROR: BUILD FAIL: cism.buildlib failed, cat /glade/derecho/scratch/jhu279/b.day2.1.1/bld/glc.bldlog.230823-094343.
ERROR cism.buildexe: gmake -j 16 failed: 512

Could you please let me know what tags are ported to Derecho? And how should I follow through the CESM tutorial on Derecho? Thanks!

 

[jedwards]

This tag is ported to derecho - but there is a simple change required in cism.

diff --git a/libglimmer/writestats.c b/libglimmer/writestats.c
index b3b81eb2..75741e5e 100644
--- a/libglimmer/writestats.c
+++ b/libglimmer/writestats.c
@@ -40,7 +40,7 @@
#include <unistd.h>
#include <string.h>
#include <fcntl.h>
-
+#include <ctype.h>

 

[Shuai Li]

I have encountered the same problem as you. Have you resolved it?

 

[jhu279]

I have encountered the same problem as you. Have you resolved it?

I went back to Cheyenne to finish the rest of the tutorial. Maybe you could change your cism following Jedwards's post if you wanna stick to Derecho.

 

[Shuai Li]

I went back to Cheyenne to finish the rest of the tutorial. Maybe you could change your cism following Jedwards's post if you wanna stick to Derecho.

Yes, I did it, and it works, thanks :)

 

[john_mejia@dri_edu]

I running into the following error when attempting to build:

cat /glade/derecho/scratch/jmejia/base_runq/bld/lnd.bldlog.231011-194604

/glade/derecho/scratch/jmejia/cases/base_runq/Tools/Makefile:189: *** NETCDF not found: Define NETCDF_PATH or NETCDF_C_PATH and NETCDF_FORTRAN_PATH in config_machines.xml or config_compilers.xml. Stop.

Any insight? thanks for your help

 

[john_mejia@dri_edu]

I am forcing the environmental variables for NETCDF paths in the conf_machines.xml files.
NETCDF_PATH > /glade/u/apps/derecho/23.06/spack/opt/spack/netcdf/4.9.2/intel-oneapi-mpi/2021.8.0/oneapi/2023.0.0/pbyg/

However, now I am having the following error when building:

cat /glade/derecho/scratch/jmejia/base_run/bld/lnd.bldlog.231011-210421

This is a weird behavior. I am using cesm v 2.1.3 as indicated in other forums. Any insight is appreciated.




/glade/u/home/jmejia/my_cesm_sandbox/components/clm//cime_config/buildlib:6: DeprecationWarning: the imp module is deprecated in f


avour of importlib and slated for removal in Python 3.12; see the module's documentation for alternative uses


import sys, os, shutil, imp


gmake complib -j 16 MODEL=clm COMPLIB=/glade/derecho/scratch/jmejia/base_run/bld/intel/mpich/nodebug/nothreads/mct/mct/noesmf/lib/


libclm.a -f /glade/derecho/scratch/jmejia/cases/base_run/Tools/Makefile MACFILE=/glade/derecho/scratch/jmejia/cases/base_run/Macro


s.derecho :





output:


/mkSrcfiles


cp -f Filepath Deppath





err:





gmake: /xmlquery: Command not found


gmake: /xmlquery: Command not found


cat: Srcfiles: No such file or directory


gmake: /mkSrcfiles: Command not found


/glade/derecho/scratch/jmejia/cases/base_run/Tools/Makefile:78: /Macros.make: No such file or directory


gmake: *** No rule to make target '/Macros.make'. Stop.


gmake: *** Waiting for unfinished jobs....





ERROR: Command gmake complib -j 16 MODEL=clm COMPLIB=/glade/derecho/scratch/jmejia/base_run/bld/intel/mpich/nodebug/nothreads/mct/


mct/noesmf/lib/libclm.a -f /glade/derecho/scratch/jmejia/cases/base_run/Tools/Makefile MACFILE=/glade/derecho/scratch/jmejia/cases


/base_run/Macros.derecho failed with rc=2

 

[john_mejia@dri_edu]

Never mind. I started from scratch and force the use of release-cesm2.1.4. Then, I fixed the missing line in #include <ctype.h> inside libglimmer/writestats.c.
It built smoothly. Thanks.

 

[jiamengl]

I am forcing the environmental variables for NETCDF paths in the conf_machines.xml files.
NETCDF_PATH > /glade/u/apps/derecho/23.06/spack/opt/spack/netcdf/4.9.2/intel-oneapi-mpi/2021.8.0/oneapi/2023.0.0/pbyg/

However, now I am having the following error when building:

cat /glade/derecho/scratch/jmejia/base_run/bld/lnd.bldlog.231011-210421

This is a weird behavior. I am using cesm v 2.1.3 as indicated in other forums. Any insight is appreciated.




/glade/u/home/jmejia/my_cesm_sandbox/components/clm//cime_config/buildlib:6: DeprecationWarning: the imp module is deprecated in f


avour of importlib and slated for removal in Python 3.12; see the module's documentation for alternative uses


import sys, os, shutil, imp


gmake complib -j 16 MODEL=clm COMPLIB=/glade/derecho/scratch/jmejia/base_run/bld/intel/mpich/nodebug/nothreads/mct/mct/noesmf/lib/


libclm.a -f /glade/derecho/scratch/jmejia/cases/base_run/Tools/Makefile MACFILE=/glade/derecho/scratch/jmejia/cases/base_run/Macro


s.derecho :





output:


/mkSrcfiles


cp -f Filepath Deppath





err:





gmake: /xmlquery: Command not found


gmake: /xmlquery: Command not found


cat: Srcfiles: No such file or directory


gmake: /mkSrcfiles: Command not found


/glade/derecho/scratch/jmejia/cases/base_run/Tools/Makefile:78: /Macros.make: No such file or directory


gmake: *** No rule to make target '/Macros.make'. Stop.


gmake: *** Waiting for unfinished jobs....





ERROR: Command gmake complib -j 16 MODEL=clm COMPLIB=/glade/derecho/scratch/jmejia/base_run/bld/intel/mpich/nodebug/nothreads/mct/


mct/noesmf/lib/libclm.a -f /glade/derecho/scratch/jmejia/cases/base_run/Tools/Makefile MACFILE=/glade/derecho/scratch/jmejia/cases


/base_run/Macros.derecho failed with rc=2

Hello I wondering how did you add the NETCDF_PATH in conf_machines.xml? I tried add this line
<env name="NETCDF_PATH">/glade/u/apps/derecho/23.06/spack/opt/spack/netcdf/4.9.2/intel-oneapi-mpi/2021.8.0/oneapi/2023.0.0/pbyg/</env>
in <environment_variables> but still got errors about NETCDF_PATH

 

[jedwards]

cesm2.1.4 is ported to derecho and that is the model you should use in the 2.1.x series. NOT 2.1.3