configure cam5 with se dynamic core

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dan_lipsa@kitware_com

Member
Dear CESM community,I am trying to configure cam5 directly (not through cesm configuration). I am issuing:~/src/cesm1_2_1/models/atm/cam/bld/configure -fc mpif90 -fc_type gnu -cc mpicc -dyn se -hgrid ne2np4 -ntasks 2 -debug -nosmp -testto configure my build, however I am getting:Issuing command to the CICE configure utility:~/src/cesm1_2_1/models/ice/cice/bld/configure -hgrid ne2np4 -cice_mode prescribed -ntr_aero 0 -nx -ny 1 -bsizex -bsizey -maxblocks -decomptype -cache config_cache_cice.xml -cachedir ~/build/cam-5.3-se-ne2np4Value "-ny" invalid for option nx (number expected)'-hgrid ne30np4' works correctly, however this configuration takes a long time to run.I am trying to configure the simulation with a smaller grid to make debugging easier. Do you have any suggestion on how to fix the problem?Thanks, Dan
 
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dan_lipsa@kitware_com

Member
It seems the problem is in~/src/cesm1_2_1/models/atm/cam/bld/config_files/horiz_grid.xmlwhere ncol="" for my grid size (ne2np4). Does this mean I cannot run cam5 with this grid size? Thanks,Dan 
 
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dan_lipsa@kitware_com

Member
It seems the problem is in~/src/cesm1_2_1/models/atm/cam/bld/config_files/horiz_grid.xmlwhere ncol="" for my grid size (ne2np4). Does this mean I cannot run cam5 with this grid size? Thanks,Dan 
 
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dan_lipsa@kitware_com

Member
It seems the problem is in~/src/cesm1_2_1/models/atm/cam/bld/config_files/horiz_grid.xmlwhere ncol="" for my grid size (ne2np4). Does this mean I cannot run cam5 with this grid size? Thanks,Dan 
 
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dan_lipsa@kitware_com

Member
I tried -hgrid ne16np4 running on 2 MPI processors, however I get:(seq_mct_drv) : Performing domain checking(seq_domain_check)  --- checking land maskfrac ---(seq_domain_check)  --- checking ocean maskfrac --- (seq_domain_check_fracmask) ERROR: incompatible domain mask and frac values (seq_domain_check_fracmask) ERROR: incompatible domain mask and frac values(shr_sys_abort) ERROR: (seq_domain_check_fracmask)  incompatible domain mask and frac values(shr_sys_abort) WARNING: calling shr_mpi_abort() and stopping(shr_sys_abort) ERROR: (seq_domain_check_fracmask)  incompatible domain mask and frac values(shr_sys_abort) WARNING: calling shr_mpi_abort() and stoppingand then the simulation ends. ne30np4 is the smallest cam5 se simulation I can run. Attached is my full cam5 log.Do you know what might be the problem? Thank you,Dan 
 
D

dan_lipsa@kitware_com

Member
I tried -hgrid ne16np4 running on 2 MPI processors, however I get:(seq_mct_drv) : Performing domain checking(seq_domain_check)  --- checking land maskfrac ---(seq_domain_check)  --- checking ocean maskfrac --- (seq_domain_check_fracmask) ERROR: incompatible domain mask and frac values (seq_domain_check_fracmask) ERROR: incompatible domain mask and frac values(shr_sys_abort) ERROR: (seq_domain_check_fracmask)  incompatible domain mask and frac values(shr_sys_abort) WARNING: calling shr_mpi_abort() and stopping(shr_sys_abort) ERROR: (seq_domain_check_fracmask)  incompatible domain mask and frac values(shr_sys_abort) WARNING: calling shr_mpi_abort() and stoppingand then the simulation ends. ne30np4 is the smallest cam5 se simulation I can run. Attached is my full cam5 log.Do you know what might be the problem? Thank you,Dan 
 
D

dan_lipsa@kitware_com

Member
I tried -hgrid ne16np4 running on 2 MPI processors, however I get:(seq_mct_drv) : Performing domain checking(seq_domain_check)  --- checking land maskfrac ---(seq_domain_check)  --- checking ocean maskfrac --- (seq_domain_check_fracmask) ERROR: incompatible domain mask and frac values (seq_domain_check_fracmask) ERROR: incompatible domain mask and frac values(shr_sys_abort) ERROR: (seq_domain_check_fracmask)  incompatible domain mask and frac values(shr_sys_abort) WARNING: calling shr_mpi_abort() and stopping(shr_sys_abort) ERROR: (seq_domain_check_fracmask)  incompatible domain mask and frac values(shr_sys_abort) WARNING: calling shr_mpi_abort() and stoppingand then the simulation ends. ne30np4 is the smallest cam5 se simulation I can run. Attached is my full cam5 log.Do you know what might be the problem? Thank you,Dan 
 
E

eaton

CSEG and Liaisons
I can run this configuration using cesm1_2_2.  Can you update to that version?
If not, the problem in cesm1_2_1 is that there is a problem in this file:grid_file = /home/danlipsa/src/cesm-data/share/domains/domain.ocn.ne16np4_gx3v7.120406.ncIf you download https://svn-ccsm-inputdata.cgd.ucar.edu/trunk/inputdata/share/domains/domain.ocn.ne16np4_gx3v7.121113.nc and use it by settingfocndomain='/home/danlipsa/src/cesm-data/share/domains/domain.ocn.ne16np4_gx3v7.121113.nc'in the script that calls build-namelist (I'm assuming you're using a CAM standalone build) then things should work. 
 
E

eaton

CSEG and Liaisons
I can run this configuration using cesm1_2_2.  Can you update to that version?
If not, the problem in cesm1_2_1 is that there is a problem in this file:grid_file = /home/danlipsa/src/cesm-data/share/domains/domain.ocn.ne16np4_gx3v7.120406.ncIf you download https://svn-ccsm-inputdata.cgd.ucar.edu/trunk/inputdata/share/domains/domain.ocn.ne16np4_gx3v7.121113.nc and use it by settingfocndomain='/home/danlipsa/src/cesm-data/share/domains/domain.ocn.ne16np4_gx3v7.121113.nc'in the script that calls build-namelist (I'm assuming you're using a CAM standalone build) then things should work. 
 
E

eaton

CSEG and Liaisons
I can run this configuration using cesm1_2_2.  Can you update to that version?
If not, the problem in cesm1_2_1 is that there is a problem in this file:grid_file = /home/danlipsa/src/cesm-data/share/domains/domain.ocn.ne16np4_gx3v7.120406.ncIf you download https://svn-ccsm-inputdata.cgd.ucar.edu/trunk/inputdata/share/domains/domain.ocn.ne16np4_gx3v7.121113.nc and use it by settingfocndomain='/home/danlipsa/src/cesm-data/share/domains/domain.ocn.ne16np4_gx3v7.121113.nc'in the script that calls build-namelist (I'm assuming you're using a CAM standalone build) then things should work. 
 
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