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dice.buildnml.csh failing during cesm_setup

N

nitkbhat@gmail_com

Member
1) I created the following case.  [nitin@master scripts]$ ./create_newcase -case ./../nitin_cases/our_case -mach userdefined -compset K -res f19_g16-------------------------------------------------------------------------------For a list of potential issues in the current tag, please point your web browser to:https://svn-ccsm-models.cgd.ucar.edu/cesm1/known_problems/------------------------------------------------------------------------------- grid longname is f19_g16Component set: longname (shortname) (alias)  2000_CAM4_CLM40.*_DICE%PRES_DOCN%DOM_SROF_SGLC_SWAV (K)Component set Description:  CAM: CLM: SROF: DICE: DOCN: SGLC: SWAV: present day: cam4 physics: clm4.0 physics: dice mode is prescribed: docn data mode:Grid:  a%1.9x2.5_l%1.9x2.5_oi%gx1v6_r%r05_m%gx1v6_g%null_w%null (1.9x2.5_gx1v6)  ATM_GRID = 1.9x2.5  NX_ATM=144 NY_ATM=96  LND_GRID = 1.9x2.5  NX_LND=144 NX_LND=96  ICE_GRID = gx1v6  NX_ICE=320 NX_ICE=384  OCN_GRID = gx1v6  NX_OCN=320 NX_OCN=384  ROF_GRID = r05  NX_ROF=720 NX_ROF=360  GLC_GRID = 1.9x2.5  NX_GLC=144 NX_GLC=96  WAV_GRID = null  NX_WAV=0 NX_WAV=0Grid Description:  null is no grid: 1.9x2.5 is FV 2-deg grid: gx1v6 is Greenland pole v6 1-deg grid: r05 is 1/2 degree river routing grid:Non-Default Options:  ATM_NCPL: 48  BUDGETS: FALSE  CAM_CONFIG_OPTS: -phys cam4  CAM_DYCORE: fv  CCSM_BGC: CO2A  CCSM_CO2_PPMV: 367.0  CLM_CO2_TYPE: diagnostic  CLM_CONFIG_OPTS: -phys clm4_0  CLM_NML_USE_CASE: 2000_control  COMP_ATM: cam  COMP_GLC: sglc  COMP_ICE: dice  COMP_LND: clm  COMP_OCN: docn  COMP_ROF: srof  COMP_WAV: swav  CPL_ALBAV: false  CPL_EPBAL: off  DICE_MODE: prescribed  DOCN_MODE: prescribed  OCN_NCPL: $ATM_NCPL  OCN_TIGHT_COUPLING: TRUE  ROF_NCPL: 8  SCIENCE_SUPPORT: NO  SSTICE_DATA_FILENAME: $DIN_LOC_ROOT/atm/cam/sst/sst_HadOIBl_bc_1x1_clim_c101029.nc  SSTICE_GRID_FILENAME: $DIN_LOC_ROOT/ocn/docn7/domain.ocn.1x1.111007.nc  SSTICE_STREAM: CAMDATA  SSTICE_YEAR_ALIGN: 1  SSTICE_YEAR_END: 0  SSTICE_YEAR_START: 0 The PE layout for this case match these options:GRID =  a%1.9x2.5Creating /storage/home/nitin/CESM/cesm1_2_2/nitin_cases/our_caseCreated /storage/home/nitin/CESM/cesm1_2_2/nitin_cases/our_case/env_case.xmlCreated /storage/home/nitin/CESM/cesm1_2_2/nitin_cases/our_case/env_mach_pes.xmlCreated /storage/home/nitin/CESM/cesm1_2_2/nitin_cases/our_case/env_build.xmlCreated /storage/home/nitin/CESM/cesm1_2_2/nitin_cases/our_case/env_run.xmlLocking file /storage/home/nitin/CESM/cesm1_2_2/nitin_cases/our_case/env_case.xmlSuccessfully created the case for userdefined   
 
N

nitkbhat@gmail_com

Member
 2) I set the XML variables in env_run.xml, env_build.xml and run cesm_setup, I get the following error                    [nitin@master our_case]$ ./cesm_setupMacros script already created ...skipping Machine/Decomp/Pes configuration has already been done ...skipping Running preview_namelist script infile is /storage/home/nitin/CESM/cesm1_2_2/nitin_cases/our_case/Buildconf/cplconf/cesm_namelistCAM writing dry deposition namelist to drv_flds_inWriting ocean component namelist to ./docn_inCAM writing namelist to atm_inCLM configure done.CLM adding use_case 2000_control defaults for var sim_year with val 2000CLM adding use_case 2000_control defaults for var sim_year_range with val constantCLM adding use_case 2000_control defaults for var use_case_desc with val Conditions to simulate 2000 land-useERROR(build-namelist::new): Required input variable datvarnames was not foundERROR: dice.buildnml.csh failedERROR: /storage/home/nitin/CESM/cesm1_2_2/nitin_cases/our_case/preview_namelists failed: 25344 
 
N

nitkbhat@gmail_com

Member
 2) I set the XML variables in env_run.xml, env_build.xml and run cesm_setup, I get the following error                    [nitin@master our_case]$ ./cesm_setupMacros script already created ...skipping Machine/Decomp/Pes configuration has already been done ...skipping Running preview_namelist script infile is /storage/home/nitin/CESM/cesm1_2_2/nitin_cases/our_case/Buildconf/cplconf/cesm_namelistCAM writing dry deposition namelist to drv_flds_inWriting ocean component namelist to ./docn_inCAM writing namelist to atm_inCLM configure done.CLM adding use_case 2000_control defaults for var sim_year with val 2000CLM adding use_case 2000_control defaults for var sim_year_range with val constantCLM adding use_case 2000_control defaults for var use_case_desc with val Conditions to simulate 2000 land-useERROR(build-namelist::new): Required input variable datvarnames was not foundERROR: dice.buildnml.csh failedERROR: /storage/home/nitin/CESM/cesm1_2_2/nitin_cases/our_case/preview_namelists failed: 25344 
 
J

jedwards

CSEG and Liaisons
Staff member
The K compset is a little used or tested configuration.   I'll ask around and see if I can find someone who has experience with it.   Perhaps if you explain the experiment you have in mind we can point you toward a more appropriate compset.   
 
J

jedwards

CSEG and Liaisons
Staff member
The K compset is a little used or tested configuration.   I'll ask around and see if I can find someone who has experience with it.   Perhaps if you explain the experiment you have in mind we can point you toward a more appropriate compset.   
 
N

nitkbhat@gmail_com

Member
Oh okay. sure, sir. I wanted to run a component set with the following configuration:atmosphere: active; land:active; all other components should be data. And the K component set matched the configuration of this.So, we want a component set that matches the configuration of atmosphere and land being active and other components being data models. Thanks. 
 
N

nitkbhat@gmail_com

Member
Oh okay. sure, sir. I wanted to run a component set with the following configuration:atmosphere: active; land:active; all other components should be data. And the K component set matched the configuration of this.So, we want a component set that matches the configuration of atmosphere and land being active and other components being data models. Thanks. 
 
N

nitkbhat@gmail_com

Member
In another case that I successfully built, I get an error while running.  NetCDF: Invalid dimension ID or name*** glibc detected *** /home/nitin/CESM/NEW_CASES/CaseB2/exeroot/cesm.exe: malloc(): memory corruption: 0x0000000011ff7040 ****** glibc detected *** /home/nitin/CESM/NEW_CASES/CaseB2/exeroot/cesm.exe: malloc(): memory corruption: 0x00000000122c2210 *** I have posted this in the forum under the link https://bb.cgd.ucar.edu/cesm-runtime-error-netcdf-invalid-dimension-id-or-name-glibc-detected Can you help us resolve this runtime error?Is there any problem with netcdf that we are missing out on? Thanks.  
 
N

nitkbhat@gmail_com

Member
In another case that I successfully built, I get an error while running.  NetCDF: Invalid dimension ID or name*** glibc detected *** /home/nitin/CESM/NEW_CASES/CaseB2/exeroot/cesm.exe: malloc(): memory corruption: 0x0000000011ff7040 ****** glibc detected *** /home/nitin/CESM/NEW_CASES/CaseB2/exeroot/cesm.exe: malloc(): memory corruption: 0x00000000122c2210 *** I have posted this in the forum under the link https://bb.cgd.ucar.edu/cesm-runtime-error-netcdf-invalid-dimension-id-or-name-glibc-detected Can you help us resolve this runtime error?Is there any problem with netcdf that we are missing out on? Thanks.  
 
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