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ERROR: Could not find all inputdata on any server(Cannot download file since it lives outside of the input_data_root)

X

XinhaoSuo

Xinhao Suo
Member
HI.
I tried to copy the method in "9.5 Example-Black Carbon Radiative Forcing" in the CAM6.3 Use's guide to Diagnostic BC radiative forcing, I copied the following line to the end of user_nl_cam and then run the program:

mode_defs =
'mam4_mode1:accum:=',
'A:num_a1:N:num_c1:num_mr:+',
'A:so4_a1:N:so4_c1:sulfate:/fs/cgd/csm/inputdata/atm/cam/physprops/sulfate_rrtmg_c080918.nc:+',
'A:pom_a1:N:pom_c1:p-organic:/fs/cgd/csm/inputdata/atm/cam/physprops/ocpho_rrtmg_c130709.nc:+',
'A:soa_a1:N:soa_c1:s-organic:/fs/cgd/csm/inputdata/atm/cam/physprops/ocphi_rrtmg_c100508.nc:+',
'A:bc_a1:N:bc_c1:black-c:/fs/cgd/csm/inputdata/atm/cam/physprops/bcpho_rrtmg_c100508.nc:+',
'A:dst_a1:N:dst_c1:dust:/fs/cgd/csm/inputdata/atm/cam/physprops/dust_aeronet_rrtmg_c141106.nc:+',
'A:ncl_a1:N:ncl_c1:seasalt:/fs/cgd/csm/inputdata/atm/cam/physprops/ssam_rrtmg_c100508.nc',
'mam4_mode2:aitken:=',
'A:num_a2:N:num_c2:num_mr:+',
'A:so4_a2:N:so4_c2:sulfate:/fs/cgd/csm/inputdata/atm/cam/physprops/sulfate_rrtmg_c080918.nc:+',
'A:soa_a2:N:soa_c2:s-organic:/fs/cgd/csm/inputdata/atm/cam/physprops/ocphi_rrtmg_c100508.nc:+',
'A:ncl_a2:N:ncl_c2:seasalt:/fs/cgd/csm/inputdata/atm/cam/physprops/ssam_rrtmg_c100508.nc:+',
'A:dst_a2:N:dst_c2:dust:/fs/cgd/csm/inputdata/atm/cam/physprops/dust_aeronet_rrtmg_c141106.nc',
'mam4_mode3:coarse:=',
'A:num_a3:N:num_c3:num_mr:+',
'A:dst_a3:N:dst_c3:dust:/fs/cgd/csm/inputdata/atm/cam/physprops/dust_aeronet_rrtmg_c141106.nc:+',
'A:ncl_a3:N:ncl_c3:seasalt:/fs/cgd/csm/inputdata/atm/cam/physprops/ssam_rrtmg_c100508.nc:+',
'A:so4_a3:N:so4_c3:sulfate:/fs/cgd/csm/inputdata/atm/cam/physprops/sulfate_rrtmg_c080918.nc',
'mam4_mode4:primary_carbon:=',
'A:num_a4:N:num_c4:num_mr:+',
'A:pom_a4:N:pom_c4:p-organic:/fs/cgd/csm/inputdata/atm/cam/physprops/ocpho_rrtmg_c130709.nc:+',
'A:bc_a4:N:bc_c4:black-c:/fs/cgd/csm/inputdata/atm/cam/physprops/bcpho_rrtmg_c100508.nc',
'mam4_mode1_nobc:accum:=',
'A:num_a1:N:num_c1:num_mr:+',
'A:so4_a1:N:so4_c1:sulfate:/fs/cgd/csm/inputdata/atm/cam/physprops/sulfate_rrtmg_c080918.nc:+',
'A:pom_a1:N:pom_c1:p-organic:/fs/cgd/csm/inputdata/atm/cam/physprops/ocpho_rrtmg_c130709.nc:+',
'A:soa_a1:N:soa_c1:s-organic:/fs/cgd/csm/inputdata/atm/cam/physprops/ocphi_rrtmg_c100508.nc:+',
'A:dst_a1:N:dst_c1:dust:/fs/cgd/csm/inputdata/atm/cam/physprops/dust_aeronet_rrtmg_c141106.nc:+',
'A:ncl_a1:N:ncl_c1:seasalt:/fs/cgd/csm/inputdata/atm/cam/physprops/ssam_rrtmg_c100508.nc',
'mam4_mode4_nobc:primary_carbon:=',
'A:num_a4:N:num_c4:num_mr:+',
'A:pom_a4:N:pom_c4:p-organic:/fs/cgd/csm/inputdata/atm/cam/physprops/ocpho_rrtmg_c130709.nc:+',
'A:bc_a4:N:bc_c4:black-c:/fs/cgd/csm/inputdata/atm/cam/physprops/bcpho_rrtmg_c100508.nc'

rad_diag_1 =
'A:Q:H2O', 'N:O2:O2', 'N:CO2:CO2', 'N:ozone:O3',
'N:N2O:N2O', 'N:CH4:CH4', 'N:CFC11:CFC11', 'N:CFC12:CFC12',
'M:mam4_mode1_nobc:CSMDATA/atm/cam/physprops/mam4_mode1_rrtmg_aeronetdust_sig1.6_dgnh.48_c140304.nc',
'M:mam4_mode2:CSMDATA/atm/cam/physprops/mam4_mode2_rrtmg_aitkendust_c141106.nc',
'M:mam4_mode3:CSMDATA/atm/cam/physprops/mam4_mode3_rrtmg_aeronetdust_sig1.2_dgnl.40_c150219.nc',
'M:mam4_mode4_nobc:CSMDATA/atm/cam/physprops/mam4_mode4_rrtmg_c130628.nc',
'N:VOLC_MMR1:CSMDATA/atm/cam/physprops/volc_camRRTMG_byradius_sigma1.6_mode1_c170214.nc',
'N:VOLC_MMR2:CSMDATA/atm/cam/physprops/volc_camRRTMG_byradius_sigma1.6_mode2_c170214.nc',
'N:VOLC_MMR3:CSMDATA/atm/cam/physprops/volc_camRRTMG_byradius_sigma1.2_mode3_c170214.nc'


But get an error:
Model cam missing file mode_defs for so4_a1 = '/fs/cgd/csm/inputdata/atm/cam/physprops/sulfate_rrtmg_c080918.nc'
Cannot download file since it lives outside of the input_data_root '/home/user/inputdata'
Model cam missing file mode_defs for pom_a1 = '/fs/cgd/csm/inputdata/atm/cam/physprops/ocpho_rrtmg_c130709.nc'
Cannot download file since it lives outside of the input_data_root '/home/user/inputdata'
Model cam missing file mode_defs for soa_a1 = '/fs/cgd/csm/inputdata/atm/cam/physprops/ocphi_rrtmg_c100508.nc'
Cannot download file since it lives outside of the input_data_root '/home/user/inputdata'
Model cam missing file mode_defs for bc_a1 = '/fs/cgd/csm/inputdata/atm/cam/physprops/bcpho_rrtmg_c100508.nc'
Cannot download file since it lives outside of the input_data_root '/home/user/inputdata'
Model cam missing file mode_defs for dst_a1 = '/fs/cgd/csm/inputdata/atm/cam/physprops/dust_aeronet_rrtmg_c141106.nc'
Cannot download file since it lives outside of the input_data_root '/home/user/inputdata'
Model cam missing file mode_defs for ncl_a1 = '/fs/cgd/csm/inputdata/atm/cam/physprops/ssam_rrtmg_c100508.nc'
Cannot download file since it lives outside of the input_data_root '/home/user/inputdata'
Model cam missing file mode_defs for so4_a2 = '/fs/cgd/csm/inputdata/atm/cam/physprops/sulfate_rrtmg_c080918.nc'
Cannot download file since it lives outside of the input_data_root '/home/user/inputdata'
Model cam missing file mode_defs for soa_a2 = '/fs/cgd/csm/inputdata/atm/cam/physprops/ocphi_rrtmg_c100508.nc'
Cannot download file since it lives outside of the input_data_root '/home/user/inputdata'
Model cam missing file mode_defs for ncl_a2 = '/fs/cgd/csm/inputdata/atm/cam/physprops/ssam_rrtmg_c100508.nc'
Cannot download file since it lives outside of the input_data_root '/home/user/inputdata'
Model cam missing file mode_defs for dst_a2 = '/fs/cgd/csm/inputdata/atm/cam/physprops/dust_aeronet_rrtmg_c141106.nc'
Cannot download file since it lives outside of the input_data_root '/home/user/inputdata'
Model cam missing file mode_defs for dst_a3 = '/fs/cgd/csm/inputdata/atm/cam/physprops/dust_aeronet_rrtmg_c141106.nc'
Cannot download file since it lives outside of the input_data_root '/home/user/inputdata'
Model cam missing file mode_defs for ncl_a3 = '/fs/cgd/csm/inputdata/atm/cam/physprops/ssam_rrtmg_c100508.nc'
Cannot download file since it lives outside of the input_data_root '/home/user/inputdata'
Model cam missing file mode_defs for so4_a3 = '/fs/cgd/csm/inputdata/atm/cam/physprops/sulfate_rrtmg_c080918.nc'
Cannot download file since it lives outside of the input_data_root '/home/user/inputdata'
Model cam missing file mode_defs for pom_a4 = '/fs/cgd/csm/inputdata/atm/cam/physprops/ocpho_rrtmg_c130709.nc'
Cannot download file since it lives outside of the input_data_root '/home/user/inputdata'
Model cam missing file mode_defs for bc_a4 = '/fs/cgd/csm/inputdata/atm/cam/physprops/bcpho_rrtmg_c100508.nc'
Cannot download file since it lives outside of the input_data_root '/home/user/inputdata'
Model cam missing file mode_defs for so4_a1 = '/fs/cgd/csm/inputdata/atm/cam/physprops/sulfate_rrtmg_c080918.nc'
Cannot download file since it lives outside of the input_data_root '/home/user/inputdata'
Model cam missing file mode_defs for pom_a1 = '/fs/cgd/csm/inputdata/atm/cam/physprops/ocpho_rrtmg_c130709.nc'
Cannot download file since it lives outside of the input_data_root '/home/user/inputdata'
Model cam missing file mode_defs for soa_a1 = '/fs/cgd/csm/inputdata/atm/cam/physprops/ocphi_rrtmg_c100508.nc'
Cannot download file since it lives outside of the input_data_root '/home/user/inputdata'
Model cam missing file mode_defs for dst_a1 = '/fs/cgd/csm/inputdata/atm/cam/physprops/dust_aeronet_rrtmg_c141106.nc'
Cannot download file since it lives outside of the input_data_root '/home/user/inputdata'
Model cam missing file mode_defs for ncl_a1 = '/fs/cgd/csm/inputdata/atm/cam/physprops/ssam_rrtmg_c100508.nc'
Cannot download file since it lives outside of the input_data_root '/home/user/inputdata'
Model cam missing file mode_defs for pom_a4 = '/fs/cgd/csm/inputdata/atm/cam/physprops/ocpho_rrtmg_c130709.nc'
Cannot download file since it lives outside of the input_data_root '/home/user/inputdata'
Model cam missing file mode_defs for bc_a4 = '/fs/cgd/csm/inputdata/atm/cam/physprops/bcpho_rrtmg_c100508.nc'
Cannot download file since it lives outside of the input_data_root '/home/user/inputdata'
Loading input file list: 'Buildconf/cism.input_data_list'
Loading input file list: 'Buildconf/cpl.input_data_list'
Loading input file list: 'Buildconf/mosart.input_data_list'
Loading input file list: 'Buildconf/cice.input_data_list'
Loading input file list: 'Buildconf/docn.input_data_list'
Checking server None with protocol None
Setting Environment NETCDF_PATH=/usr/local
Setting Environment PNETCDF_PATH=/usr/local
Setting Environment FPATH=/usr/lib64
Setting Environment CPATH=/usr/lib64
Setting resource.RLIMIT_STACK to -1 from (-1, -1)
Client protocol None not enabled
ERROR: Could not find all inputdata on any server
 

Attachments

  • user_nl_cam.txt
    3.3 KB · Views: 4
C

cacraig

Cheryl Craig
CSEG and Liaisons
Staff member
The example is a misleading as it is not able to be copied directly. Unless you have a directory /fs/cgd/csm/inputdata on your machine where the inputdata is located, it will not work. The directory should be $DIN_LOC_ROOT which is an environment variable which is replaced with your inputdata directory location during the creation of your atm_in file.

For example the line:
'A:so4_a1:N:so4_c1:sulfate:/fs/cgd/csm/inputdata/atm/cam/physprops/sulfate_rrtmg_c080918.nc:+',
should be:
'A:so4_a1:N:so4_c1:sulfate:$DIN_LOC_ROOT/atm/cam/physprops/sulfate_rrtmg_c080918.nc:+',

Likewise, the CSMDATA lower down in your file should be $DIN_LOC_ROOT as well
 
X

XinhaoSuo

Xinhao Suo
Member
cacraig said:
The example is a misleading as it is not able to be copied directly. Unless you have a directory /fs/cgd/csm/inputdata on your machine where the inputdata is located, it will not work. The directory should be $DIN_LOC_ROOT which is an environment variable which is replaced with your inputdata directory location during the creation of your atm_in file.

For example the line:
'A:so4_a1:N:so4_c1:sulfate:/fs/cgd/csm/inputdata/atm/cam/physprops/sulfate_rrtmg_c080918.nc:+',
should be:
'A:so4_a1:N:so4_c1:sulfate:$DIN_LOC_ROOT/atm/cam/physprops/sulfate_rrtmg_c080918.nc:+',

Likewise, the CSMDATA lower down in your file should be $DIN_LOC_ROOT as well
Click to expand...
Thank you so much for your help! I have solved the problem successfully!
But when i looked at the output, i found no shortwave flux...
I want to calculate the radiative forcing , so do I need to add "fincl2 = 'FLNT', 'FLNR','FLNS', 'FSNT','FSNR', 'FSNS'" to user_nl_cam and calculate the RF?
or add "Rad_data_output =.true" to get the radiative forcing result.
 
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