Error in building at CESM1_2_2

[wangsz@fio_org_cn]

Hi, I am porting CESM1_2_2 to my own server, and I encountered problems when I run the script ./test.build.

This is from mct.bldlog.xxx:

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Thu Oct 20 19:57:14 CST 2016 /soa01/home/wangsz/cesm1_2_2/scripts//bld/intel/mpich/nodebug/nothreads/mct.bldlog.161020-195712
setenv MCT_DIR /soa01/home/wangsz/cesm1_2_2/models/utils/mct
setenv LIBDIR /soa01/home/wangsz/cesm1_2_2/scripts//bld/intel/mpich/nodebug/nothreads
setenv MCT_LIBDIR /soa01/home/wangsz/cesm1_2_2/scripts//bld/intel/mpich/nodebug/nothreads/mct
echo MCT_LIBDIR /soa01/home/wangsz/cesm1_2_2/scripts//bld/intel/mpich/nodebug/nothreads/mct
MCT_LIBDIR /soa01/home/wangsz/cesm1_2_2/scripts//bld/intel/mpich/nodebug/nothreads/mct
cd /soa01/home/wangsz/cesm1_2_2/scripts//bld/intel/mpich/nodebug/nothreads/mct
echo Copying source to CCSM EXEROOT...
Copying source to CCSM EXEROOT...
cp /soa01/home/wangsz/cesm1_2_2/models/utils/mct/Makefile .
mkdir mct
mkdir: cannot create directory `mct': File exists
cp /soa01/home/wangsz/cesm1_2_2/models/utils/mct/mct/Makefile mct
mkdir mpeu
mkdir: cannot create directory `mpeu': File exists
cp /soa01/home/wangsz/cesm1_2_2/models/utils/mct/mpeu/Makefile mpeu
mkdir mpi-serial
mkdir: cannot create directory `mpi-serial': File exists
cp /soa01/home/wangsz/cesm1_2_2/models/utils/mct/mpi-serial/Makefile mpi-serial
set runconf = 0
set runclean = 0
echo Running configure...
Running configure...
echo for OS=Linux MACH=userdefined
for OS=Linux MACH=userdefined
gmake -f /soa01/home/wangsz/cesm1_2_2/scripts/test1/Tools/Makefile /soa01/home/wangsz/cesm1_2_2/scripts//bld/intel/mpich/nodebug/nothreads/mct/Makefile.conf
gmake: `/soa01/home/wangsz/cesm1_2_2/scripts//bld/intel/mpich/nodebug/nothreads/mct/Makefile.conf' is up to date.
if ( 0 == 1 ) then
cp -p Makefile.conf Makefile.conf.old
gmake
gmake[1]: Entering directory `/soa01/home/wangsz/cesm1_2_2/scripts/bld/intel/mpich/nodebug/nothreads/mct/mpeu'
mpif90  -c  -I. -I../ -DLinux -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRINTEL -DSYSLINUX -DCPRINTEL -O2  -fp-model source -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs  -O2  -free  -I.  -I/soa01/home/wangsz/cesm1_2_2/scripts//bld/intel/mpich/nodebug/nothreads/include -I/soa01/home/wangsz/cesm1_2_2/scripts//bld/intel/mpich/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -IUSERDEFINED_MUST_EDIT_THIS/include -I/soa01/home/wangsz/cesm1_2_2/scripts//bld/intel/mpich/nodebug/nothreads/include -I/soa01/home/wangsz/cesm1_2_2/models/csm_share/shr   /soa01/home/wangsz/cesm1_2_2/models/utils/mct/mpeu/m_mpif.F90
gfortran: source: No such file or directory
gfortran: big_endian: No such file or directory
gfortran: byterecl: No such file or directory
gfortran: realloc_lhs: No such file or directory
gfortran: unrecognized option '-convert'
gfortran: unrecognized option '-traceback'
f951: error: unrecognized command line option "-assume"
f951: error: unrecognized command line option "-assume"
f951: error: unrecognized command line option "-fp-model"
f951: error: unrecognized command line option "-ftz"
f951: error: unrecognized command line option "-free"
gmake[1]: *** [m_mpif.o] Error 1
gmake[1]: Leaving directory `/soa01/home/wangsz/cesm1_2_2/scripts/bld/intel/mpich/nodebug/nothreads/mct/mpeu'
gmake: *** [subdirs] Error 2
exit 1
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It seems that gfortran is where errors come from. But I have defined compiler to ifort in Macros.

This is from Macros:
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#
# Makefile Macros generated from /soa01/home/wangsz/cesm1_2_2/scripts/ccsm_utils/Machines/config_compilers.xml using
# COMPILER=intel
# OS=Linux
# MACH=userdefined
#
CPPDEFS+= -DFORTRANUNDERSCORE -DNO_R16 -DLinux -DCPRINTEL

#SLIBS+=# USERDEFINED $(shell $(NETCDF_PATH)/bin/nc-config --flibs)
SLIBS+=# -L /soa01/home/wangsz/local/netcdf/lib -lnetcdf -lnetcdff

CFLAGS:= -O2 -fp-model precise

CONFIG_ARGS:=

CXX_LDFLAGS:= -cxxlib

CXX_LINKER:=FORTRAN

ESMF_LIBDIR:=

FC_AUTO_R8:= -r8

FFLAGS:= -fp-model source -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs

FFLAGS_NOOPT:= -O0

FIXEDFLAGS:= -fixed -132

FREEFLAGS:= -free

MPICC:= mpicc 

MPICXX:= mpicxx

MPIFC:= mpif90

MPI_LIB_NAME:=

MPI_PATH:= /opt/intel/impi/5.0.0.028/intel64/

NETCDF_PATH:= $NETCDFDIR

PNETCDF_PATH:=

SCC:= icc

SCXX:= icpc

SFC:= ifort

SUPPORTS_CXX:=TRUE

ifeq ($(DEBUG), TRUE)
   FFLAGS += -O0 -g -check uninit -check bounds -check pointers -fpe0
endif

ifeq ($(DEBUG), FALSE)
   FFLAGS += -O2
endif

ifeq ($(compile_threaded), true)
   LDFLAGS += -openmp
   CFLAGS += -openmp
   FFLAGS += -openmp
endif

ifeq ($(MODEL), pop2)
   CPPDEFS += -D_USE_FLOW_CONTROL
endi
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One more quetion:
What are ./configure scripts in /models/utils/mct and /models/utils/pio used for? Do I have to run these two ./configure scripts?
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Any suggestions will be highly appreciated, especially to a rookie in climate modelling.

 

[yuqiang_zhang@duke_edu]

Hi Any suggestion to this question? I have exact the same issue. I defined the Ifort compiler for my system, but the mcp gave error messages that  "gfortran: source: No such file or directorygfortran: big_endian: No such file or directorygfortran: byterecl: No such file or directorygfortran: realloc_lhs: No such file or directorygfortran: unrecognized option '-convert'gfortran: unrecognized option '-traceback'" which mpiifort/opt/apps/rhel7/intel_2018/compilers_and_libraries_2018.2.199/linux/mpi/intel64/bin/mpiifort which mpif90/opt/apps/rhel7/mpich-3.2.1-intel//bin/mpif90