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Error in case.build step

Yonas

Yonas

Yonas
New Member
I am trying to configure CLM model for my project from CTSM repository on Linux based system with GNU 7.4.0, NetCDF_C 4.7.4, NetCDF_Fortran 4.5.3, P_NetCDF 4.5.3, & openmpi. i am receiving error on the ./case.build step and the error is related to the PIO build. Please find the attached pio error file 'pio.bldlog' and configuration files (config_machines.xml & config_compilers.xml). Any help on what I am missing?
 

Attachments

  • config_compilers.txt
    42.5 KB · Views: 5
  • config_machines.txt
    111.4 KB · Views: 1
  • pio.bldlog.201118-173959.txt
    51.1 KB · Views: 6
J

jedwards

CSEG and Liaisons
Staff member
It looks as if you ran out of disk space while trying to compile. Check the size of /home/yoni/projects/scratch
and make sure you have adequate space available.
 
Yonas

Yonas

Yonas
New Member
jedwards said:
It looks as if you ran out of disk space while trying to compile. Check the size of /home/yoni/projects/scratch
and make sure you have adequate space available.
Click to expand...
Thanks for your help, i checked the size at "/home/yoni/projects/scratch" and it has enough space. To verify that i make a basic smoke testing that doesn't require much space using "./create_test SMS_D_Ld3.f10_f10_musgs.I1850Clm50BgcCrop.yoni-ThinkPad-E560_gnu.clm-default"
and i think the pio error message is similar to the previous. Any suggestions?
 

Attachments

  • pio.bldlog.201118-211357.txt
    286.5 KB · Views: 1
J

jedwards

CSEG and Liaisons
Staff member
f951: Fatal Error: Reading module ‘piodarray’ at line 1598 column 33: Unexpected EOF

That's all I've got - do you have another filesystem you can try?
 
Yonas

Yonas

Yonas
New Member
jedwards said:
f951: Fatal Error: Reading module ‘piodarray’ at line 1598 column 33: Unexpected EOF

That's all I've got - do you have another filesystem you can try?
Click to expand...
Thank you, i have question regarding to pio library, Is the model require specific pio library configuration similar to the netcdf library to work properly?
 
J

jedwards

CSEG and Liaisons
Staff member
I don't understand the question - there are two pio libraries in the distribution, you can try changing to pio2 with
xmlchange PIO_VERSION=2 you might try that to see if you get any further.
 
Yonas

Yonas

Yonas
New Member
jedwards said:
I don't understand the question - there are two pio libraries in the distribution, you can try changing to pio2 with
xmlchange PIO_VERSION=2 you might try that to see if you get any further.
Click to expand...
Thank you for your help, i changed the to the PIO_VERSION=2 and the previous error is resolved however i am getting different error which says
src/flib/CMakeFiles/piof.dir/build.make:113: recipe for target 'src/flib/CMakeFiles/piof.dir/pio.F90.o' failed . Can you help me with this error?
 

Attachments

  • pio.bldlog.201119-195041.txt
    60.5 KB · Views: 3
J

jedwards

CSEG and Liaisons
Staff member
This is the same error you got with pio1 Fatal Error: Reading module ‘pionfatt_mod’ at line 1459 column 64: Unexpected EOF
Although I have no evidence for this, I am suspicious of you gfortran version - can you reinstall gcc and gfortran, perhaps in a newer version?
 
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