ERROR in ./case.submit

[Jeline]

Dear CESM scientists,

I ran CESM2.1.5 on the Intel classic compiler with the following case settings:

1. ./create_newcase --compset IHistClm50BgcCrop --res f09_g17 --case $HOME/cases/testfast --mach mytest --compiler intel --run-unsupported
2. vi env_run.xml # chenge STOP_N and STOP_OPTION to 5 and nyears ; change REST_N and REST_OPTION to 1 and month
3. ./case.setup
4. vi env_mach_pes.xml # change NTASKS to -1, change COST_PES and TOTALPES to 48 cause the machine only has 48 cores.
5. ./case.setup --reset
6. ./preview_run
7. ./case.build
8. ./case.submit

Then an error occurred:

ERROR: RUN FAIL: Command 'mpirun -np 48 /home/loopy/CESM/scratch/testfast/bld/cesm.exe >> cesm.log.$LID 2>&1 ' failed
See log file for details: /home/loopy/CESM/scratch/testfast/run/cesm.log.250802-143708

The log file mentioned in the error has been attached, but I didn't find any ERROR-related prompts in it. Additionally, I have also attached the modified env_run.xml and env_mach_pes.xml files. Why is this error occurring? How should I modify it? Thanks for your reply.

 

[Jeline]

It seems to be a memory issue. The computer I'm using has 48 cores. After changing the number of CESM usage nodes from 48 to 24, this problem was resolved. However, a new issue occurred in ./case.submit. It still reported "ERROR: RUN FAIL: Command 'mpirun -np 48 /home/loopy/CESM/scratch/testfast/bld/cesm.exe >> cesm.log.$LID 2>&1 ' failed" as an error, but the content of the log file increased. Could you please explain why this new issue occurred?

 

[dbailey]

Looks like you might have some initial files missing?

NetCDF: Invalid dimension ID or name
NetCDF: Invalid dimension ID or name
NetCDF: Invalid dimension ID or name
NetCDF: Invalid dimension ID or name
NetCDF: Invalid dimension ID or name
NetCDF: Variable not found
NetCDF: Invalid dimension ID or name
NetCDF: Invalid dimension ID or name
NetCDF: Invalid dimension ID or name
NetCDF: Invalid dimension ID or name
NetCDF: Invalid dimension ID or name
NetCDF: Invalid dimension ID or name
NetCDF: Invalid dimension ID or name
NetCDF: Invalid dimension ID or name
NetCDF: Invalid dimension ID or name
NetCDF: Invalid dimension ID or name
NetCDF: Variable not found

 

[Jeline]

Looks like you might have some initial files missing?

NetCDF: Invalid dimension ID or name
NetCDF: Invalid dimension ID or name
NetCDF: Invalid dimension ID or name
NetCDF: Invalid dimension ID or name
NetCDF: Invalid dimension ID or name
NetCDF: Variable not found
NetCDF: Invalid dimension ID or name
NetCDF: Invalid dimension ID or name
NetCDF: Invalid dimension ID or name
NetCDF: Invalid dimension ID or name
NetCDF: Invalid dimension ID or name
NetCDF: Invalid dimension ID or name
NetCDF: Invalid dimension ID or name
NetCDF: Invalid dimension ID or name
NetCDF: Invalid dimension ID or name
NetCDF: Invalid dimension ID or name
NetCDF: Variable not found

Thank you for your reply. How can I determine exactly which NetCDF files are missing?