ERROR in mksurfdata_map: netcdf error from domain_read rcode =2 error =No such file or directory

[majun]

Dear scientist,
Now I'm trying to create a surface dataset for a single point, however ,in the last setp using mksurfdata.pl, it failed.
(1) cd /home/shenhf/majun/clm5.0/tools/mksurfdata_map/src
(2) gmake (I have changed netcdf settings in Makefile.common, screenshot of changes is attached below )
(3) ./mksurfdata.pl -res usrspec -usr_gname 1x1_wuhan -usr_gdate 200423
error shows：
...
mksrf_gridtype = global
Output ALL data in file as 64-bit
Set wetland to 0% over land
In mkpftMod::mkpftInit()...
calling domain_read
finished domain_read
fsurdat is 2d lat/lon grid
nlon= 1 nlat= 1
(OPNFIL): Successfully opened file surfdata_1x1_wuhan_hist_16pfts_Irrig_CMIP6_simyr1850_c200426.log on unit= 99
mksrf_gridtype = global
In mkpftMod::mkpft()...
Attempting to make PFTs .....
Creating surface datasets with the standard # of PFTs = 16
netcdf error from domain_read rcode = 2 error = No such file or directory

Do you konw what's wrong? I have tried lots of times but in vain. The gcc version is 8.3.0, esmf version is 7_1_0, netcdf-c is 4.6.2 ,netcdf-fortran is 4.5.2 .
The screenshots of log file , namelist file, changes in Makefile.common , config_machines.xml ,config_compiler.xm nf -config and esmf environment settings are attached below. In addition, the domain file name that I created is domain.lnd.domain.lnd.1x1_wuhan_noocean.nc_domain.ocn_noocean.nc.200426.nc, I don't know whether it influenced the use of mksurfdata.pl or not.
Could you please help me? Thank you very much . Best wishes !

 

[majun]

https://bb.cgd.ucar.edu/cesm/thread...en-building-single-point-model-in-clm45.3431/
this post also shows the same problem and haven't been solved yet , I think it is representative and typical.

 

[oleson]

Are you sure that the file mksrf_fvegtyp is pointing to exists and is a valid netcdf file?

 

[majun]

Are you sure that the file mksrf_fvegtyp is pointing to exists and is a valid netcdf file?

I'm so sorry ,it‘s actually the problem that the file was not downloaded correctly. Thank you !!

 

[majun]

it‘s the problem that mksrf_fvegtyp file was not downloaded correctly

 

[Albert]

it‘s the problem that mksrf_fvegtyp file was not downloaded correctly

May I ask how to locted the problem to mksrf_fvegtyp file?

 

[majun]

May I ask how to locted the problem to mksrf_fvegtyp file?

I'm sorry that I I think you can edit mksurfdata_map.namelist, the mksrf_fvegtyp file may be at glade/p/cesm/cseg/inputdata/lnd/clm2/rawdata/pftcftlandusedynharv.0.25x0.25.MODIS.simyr1850-2015. c170412/mksrf_landuse_histclm50_LUH2_2000.c170412.nc

 

[Dong Peng]

I'm sorry that I I think you can edit mksurfdata_map.namelist, the mksrf_fvegtyp file may be at glade/p/cesm/cseg/inputdata/lnd/clm2/rawdata/pftcftlandusedynharv.0.25x0.25.MODIS.simyr1850-2015. c170412/mksrf_landuse_histclm50_LUH2_2000.c170412.nc

Hello. Have you found that file (glade/p/cesm/cseg/inputdata/lnd/clm2/rawdata/pftcftlandusedynharv.0.25x0.25.MODIS.simyr1850-2015. c170412/mksrf_landuse_histclm50_LUH2_2000.c170412.nc)？ I met the same issue, but I can not find this file in 'https://svn-ccsm-inputdata.cgd.ucar.edu/trunk/inputdata/lnd/clm2/rawdata/'.

 

[oleson]

I put that file on our ftp site:

ftp ftp.cgd.ucar.edu
cd pub/oleson/Data

Maybe @erik can repopulated that svn directory at some point.

 

[Dong Peng]

I put that file on our ftp site:

ftp ftp.cgd.ucar.edu
cd pub/oleson/Data

Maybe @erik can repopulated that svn directory at some point.

Thanks.

 

[Dong Peng]

I put that file on our ftp site:

ftp ftp.cgd.ucar.edu
cd pub/oleson/Data

Maybe @erik can repopulated that svn directory at some point.

Hi Oleson,

I met another question about the mksrfdata. When I run the mksrfdata.pl, it can not hook the namelist I modified in mksrfdata_map.namelist. The specify issues was
"Attempting to make gravel dataset .....
forrtl: severe (174): SIGSEGV, segmentation fault occurred"

The new datasets I added were "mksrf/map_fgrvl, fslp10, fero".

Actually, I can not find the files' path was put in the log. Here I put the log file and namelist files.

Looking for a possible solution.

 

[Dong Peng]

I put that file on our ftp site:

ftp ftp.cgd.ucar.edu
cd pub/oleson/Data

Maybe @erik can repopulated that svn directory at some point.

Hi, Oleson,

I did not find this dir in cgd.ucar.edu.

 

[oleson]

Try ftp://ftp.cgd.ucar.edu/pub/oleson

 

[Dong Peng]

Try ftp://ftp.cgd.ucar.edu/pub/oleson

OK. I got it. Thanks.

 

[dquaker]

Try ftp://ftp.cgd.ucar.edu/pub/oleson

Hello @oleson, could you kindly put the file in your directory again? I can not find the file using the ftp or on the svn directory as well. I need the file mksrf_landuse_histclm50_LUH2_2000.c170412.nc. Thank you

 

[oleson]

I've put that file back on the ftp site.