fkc000@163_com
Member
Hello there, I'm trying to build CESM2 in our server. But I couldn't even creat a new case. The result of create_newcase is like below:
./create_newcase --case test --compset FW2000 --res f09_g16 --machine siliconCompset longname is 2000_CAM60%WCTS_CLM50%BGC-CROP_CICE%PRES_DOCN%DOM_MOSART_CISM2%NOEVOLVE_SWAVCompset specification file is /public/home/fkc/cesm2/cime/../components/cam//cime_config/config_compsets.xmlCompset forcing is 1972-2004ATM component is CAM cam6 physics:WACCM with tropospheric, stratospheric, mesospheric, and lower thermospheric chemistry:LND component is clm5.0:BGC (vert. resol. CN and methane) with prognostic crop:ICE component is Sea ICE (cice) model version 5 :prescribed ciceOCN component is DOCN prescribed ocean modeROF component is MOSART: MOdel for Scale Adaptive River TransportGLC component is cism2 (default, higher-order, can run in parallel):cism ice evolution turned off (this is the standard configuration unless you're explicitly interested in ice evolution):WAV component is Stub wave componentESP component is Pes specification file is /public/home/fkc/cesm2/cime/../components/cam//cime_config/config_pes.xmlCompset specific settings: name is SSTICE_DATA_FILENAME and value is $DIN_LOC_ROOT/atm/cam/sst/sst_HadOIBl_bc_1x1_2000climo_c180511.ncTraceback (most recent call last): File "./create_newcase", line 218, in _main_func(__doc__) File "./create_newcase", line 213, in _main_func input_dir=input_dir, driver=driver) File "/public/home/fkc/cesm2/cime/scripts/Tools/../../scripts/lib/CIME/case/case.py", line 1431, in create input_dir=input_dir, driver=driver) File "/public/home/fkc/cesm2/cime/scripts/Tools/../../scripts/lib/CIME/case/case.py", line 808, in configure machobj = Machines(machine=machine_name) File "/public/home/fkc/cesm2/cime/scripts/Tools/../../scripts/lib/CIME/XML/machines.py", line 36, in __init__ GenericXML.__init__(self, infile, schema) File "/public/home/fkc/cesm2/cime/scripts/Tools/../../scripts/lib/CIME/XML/generic_xml.py", line 57, in __init__ self.read(infile, schema) File "/public/home/fkc/cesm2/cime/scripts/Tools/../../scripts/lib/CIME/XML/generic_xml.py", line 87, in read self.read_fd(fd) File "/public/home/fkc/cesm2/cime/scripts/Tools/../../scripts/lib/CIME/XML/generic_xml.py", line 112, in read_fd self.tree = ET.parse(fd) File "/public/biosoftware/python/2.7.9/lib/python2.7/xml/etree/ElementTree.py", line 1182, in parse tree.parse(source, parser) File "/public/biosoftware/python/2.7.9/lib/python2.7/xml/etree/ElementTree.py", line 656, in parse parser.feed(data) File "/public/biosoftware/python/2.7.9/lib/python2.7/xml/etree/ElementTree.py", line 1642, in feed self._raiseerror(v) File "/public/biosoftware/python/2.7.9/lib/python2.7/xml/etree/ElementTree.py", line 1506, in _raiseerror raise errxml.etree.ElementTree.ParseError: mismatched tag: line 2313, column 6 Besides, when I run query_config and other executables in /scripts, similar errors occured(also traced back to ElementTree.py). So I guess there might be something wrong with my python 2.7, but python seemed work well and I don't know how to fix it. Should I build python2.7 again or a new python3.7?Thank you in advance!
./create_newcase --case test --compset FW2000 --res f09_g16 --machine siliconCompset longname is 2000_CAM60%WCTS_CLM50%BGC-CROP_CICE%PRES_DOCN%DOM_MOSART_CISM2%NOEVOLVE_SWAVCompset specification file is /public/home/fkc/cesm2/cime/../components/cam//cime_config/config_compsets.xmlCompset forcing is 1972-2004ATM component is CAM cam6 physics:WACCM with tropospheric, stratospheric, mesospheric, and lower thermospheric chemistry:LND component is clm5.0:BGC (vert. resol. CN and methane) with prognostic crop:ICE component is Sea ICE (cice) model version 5 :prescribed ciceOCN component is DOCN prescribed ocean modeROF component is MOSART: MOdel for Scale Adaptive River TransportGLC component is cism2 (default, higher-order, can run in parallel):cism ice evolution turned off (this is the standard configuration unless you're explicitly interested in ice evolution):WAV component is Stub wave componentESP component is Pes specification file is /public/home/fkc/cesm2/cime/../components/cam//cime_config/config_pes.xmlCompset specific settings: name is SSTICE_DATA_FILENAME and value is $DIN_LOC_ROOT/atm/cam/sst/sst_HadOIBl_bc_1x1_2000climo_c180511.ncTraceback (most recent call last): File "./create_newcase", line 218, in _main_func(__doc__) File "./create_newcase", line 213, in _main_func input_dir=input_dir, driver=driver) File "/public/home/fkc/cesm2/cime/scripts/Tools/../../scripts/lib/CIME/case/case.py", line 1431, in create input_dir=input_dir, driver=driver) File "/public/home/fkc/cesm2/cime/scripts/Tools/../../scripts/lib/CIME/case/case.py", line 808, in configure machobj = Machines(machine=machine_name) File "/public/home/fkc/cesm2/cime/scripts/Tools/../../scripts/lib/CIME/XML/machines.py", line 36, in __init__ GenericXML.__init__(self, infile, schema) File "/public/home/fkc/cesm2/cime/scripts/Tools/../../scripts/lib/CIME/XML/generic_xml.py", line 57, in __init__ self.read(infile, schema) File "/public/home/fkc/cesm2/cime/scripts/Tools/../../scripts/lib/CIME/XML/generic_xml.py", line 87, in read self.read_fd(fd) File "/public/home/fkc/cesm2/cime/scripts/Tools/../../scripts/lib/CIME/XML/generic_xml.py", line 112, in read_fd self.tree = ET.parse(fd) File "/public/biosoftware/python/2.7.9/lib/python2.7/xml/etree/ElementTree.py", line 1182, in parse tree.parse(source, parser) File "/public/biosoftware/python/2.7.9/lib/python2.7/xml/etree/ElementTree.py", line 656, in parse parser.feed(data) File "/public/biosoftware/python/2.7.9/lib/python2.7/xml/etree/ElementTree.py", line 1642, in feed self._raiseerror(v) File "/public/biosoftware/python/2.7.9/lib/python2.7/xml/etree/ElementTree.py", line 1506, in _raiseerror raise errxml.etree.ElementTree.ParseError: mismatched tag: line 2313, column 6 Besides, when I run query_config and other executables in /scripts, similar errors occured(also traced back to ElementTree.py). So I guess there might be something wrong with my python 2.7, but python seemed work well and I don't know how to fix it. Should I build python2.7 again or a new python3.7?Thank you in advance!