ERROR in running cesm2.1.0

[luomin_953@126_com]

I configure the file of config_machines.xml without pnetcdf term. And there is no error during the processes of setup and build.
But when I run the cesm.exe, there some errors about pnetcdf in the file of slum.out.


Opened existing file
/home/user/liuyz1/cesm/inputdata/atm/cam/inic/fv/cami-mam3_0000-01-01_1.9x2.5_L
32_c150407.nc -1
Opened existing file
/home/user/liuyz1/cesm/inputdata/atm/cam/topo/fv_1.9x2.5_nc3000_Nsw084_Nrs016_C
pio_support::pio_die:: myrank= -1 : ERROR: nf_mod.F90: 1281 :
PNETCDF not enabled in the build
o120_Fi001_ZR_061116.nc -1
pio_support::pio_die:: myrank= -1 : ERROR: nf_mod.F90: 1281 :
PNETCDF not enabled in the build
pio_support::pio_die:: myrank= -1 : ERROR: nf_mod.F90: 1281 :
PNETCDF not enabled in the build
Image PC Routine Line Source
cesm.exe 0000000002F0CCF6 Unknown Unknown Unknown
cesm.exe 0000000002D335C1 pio_support_mp_pi 118 pio_support.F90
cesm.exe 0000000002D31887 pio_utils_mp_bad_ 97 pio_utils.F90
cesm.exe 0000000002D1BC87 nf_mod_mp_pio_inq 1281 nf_mod.F90
cesm.exe 00000000005AB4D9 hycoef_mp_hycoef_ 327 hycoef.F90
cesm.exe 0000000000595743 dyn_grid_mp_dyn_g 111 dyn_grid.F90
cesm.exe 00000000004EBBBB cam_comp_mp_cam_i 169 cam_comp.F90
cesm.exe 00000000004E418F atm_comp_mct_mp_a 209 atm_comp_mct.F90
cesm.exe 0000000000433226 component_mod_mp_ 267 component_mod.F90
cesm.exe 00000000004221DB cime_comp_mod_mp_ 1226 cime_comp_mod.F90
cesm.exe 00000000004303A9 MAIN__ 114 cime_driver.F90
cesm.exe 0000000000413B1E Unknown Unknown Unknown
libc-2.17.so 00002AD0299B93D5 __libc_start_main Unknown Unknown
cesm.exe 0000000000413A29 Unknown Unknown Unknown

I appreciate any help for solving this problem.
Yours

 

[altuntas]

Please provide the following list of information: Information to include in help requests

In addition, can you run the following command in your caseroot and post it here.

./xmlquery -p PIO

 

[little trouble maker]

Hello Altuntas, I have the similar question, the error code as following:
Opened existing file
/public1/home/amduan/panzl/cesm-inputdata/atm/cam/dst/dst_source2x2tunedcam6-2x2-04062017.nc 262144
Opened existing file
/public1/home/amduan/panzl/cesm-inputdata/atm/cam/tracer_cnst/tracer_cnst_halon
s_3D_L70_1849-2015_CMIP6ensAvg_c180927.nc 327680
NetCDF: Variable not found
NetCDF: Invalid dimension ID or name
NetCDF: Unknown file format
pio_support::pio_die:: myrank= -1 : ERROR: ionf_mod.F90: 235 :
NetCDF: Unknown file format
Image PC Routine Line Source
cesm.exe 00000000029E9116 Unknown Unknown Unknown
cesm.exe 0000000002814D91 pio_support_mp_pi 118 pio_support.F90
cesm.exe 00000000028DA546 ionf_mod_mp_open_ 235 ionf_mod.F90
cesm.exe 00000000028040B5 piolib_mod_mp_pio 2831 piolib_mod.F90
cesm.exe 000000000054C47B cam_pio_utils_mp_ 1132 cam_pio_utils.F90
cesm.exe 00000000012FC047 mo_srf_emissions_ 191 mo_srf_emissions.F90
cesm.exe 00000000012506A6 mo_chemini_mp_che 158 mo_chemini.F90
cesm.exe 00000000010BE0C8 chemistry_mp_chem 882 chemistry.F90
cesm.exe 00000000006DA272 physpkg_mp_phys_i 822 physpkg.F90
cesm.exe 0000000000501297 cam_comp_mp_cam_i 201 cam_comp.F90
cesm.exe 00000000004F8B26 atm_comp_mct_mp_a 209 atm_comp_mct.F90
cesm.exe 00000000004394E4 component_mod_mp_ 267 component_mod.F90
cesm.exe 0000000000427C7B cime_comp_mod_mp_ 1226 cime_comp_mod.F90
cesm.exe 0000000000436539 MAIN__ 114 cime_driver.F90
cesm.exe 0000000000418B22 Unknown Unknown Unknown
libc-2.17.so 00002B91FF110C05 __libc_start_main Unknown Unknown
cesm.exe 0000000000418A29 Unknown Unknown Unknown
Abort(1) on node 1 (rank 1 in comm 0): application called MPI_Abort(MPI_COMM_WORLD, 1) - process 1


And ./xmlquery -p PIO, the information is as following:
Results in group build_macros
PIO_CONFIG_OPTS:
PIO_VERSION: 1

Results in group case_last
PIO_SPEC_FILE: /public1/home/amduan/panzl/cesm_2.1.3/cime/config/cesm/machines/config_pio.xml

Results in group run_pio
PIO_ASYNC_INTERFACE: FALSE
PIO_BLOCKSIZE: -1
PIO_BUFFER_SIZE_LIMIT: -1
PIO_DEBUG_LEVEL: 0
PIO_NETCDF_FORMAT: ['CPL:64bit_offset', 'ATM:64bit_offset', 'LND:64bit_offset', 'ICE:64bit_offset', 'OCN:64bit_offset', 'ROF:64bit_offset', 'GLC:64bit_offset', 'WAV:64bit_offset', 'ESP:64bit_offset']
PIO_NUMTASKS: ['CPL:-99', 'ATM:-99', 'LND:-99', 'ICE:-99', 'OCN:-99', 'ROF:-99', 'GLC:-99', 'WAV:-99', 'ESP:-99']
PIO_REARRANGER: ['CPL:1', 'ATM:1', 'LND:1', 'ICE:1', 'OCN:1', 'ROF:1', 'GLC:1', 'WAV:1', 'ESP:1']
PIO_REARR_COMM_ENABLE_HS_COMP2IO: TRUE
PIO_REARR_COMM_ENABLE_HS_IO2COMP: FALSE
PIO_REARR_COMM_ENABLE_ISEND_COMP2IO: FALSE
PIO_REARR_COMM_ENABLE_ISEND_IO2COMP: TRUE
PIO_REARR_COMM_FCD: 2denable
PIO_REARR_COMM_MAX_PEND_REQ_COMP2IO: 0
PIO_REARR_COMM_MAX_PEND_REQ_IO2COMP: 64
PIO_REARR_COMM_TYPE: p2p
PIO_ROOT: ['CPL:1', 'ATM:1', 'LND:1', 'ICE:1', 'OCN:1', 'ROF:1', 'GLC:1', 'WAV:1', 'ESP:1']
PIO_STRIDE: ['CPL:28', 'ATM:28', 'LND:28', 'ICE:28', 'OCN:28', 'ROF:28', 'GLC:28', 'WAV:28', 'ESP:28']
PIO_TYPENAME: ['CPL:netcdf', 'ATM:netcdf', 'LND:netcdf', 'ICE:netcdf', 'OCN:netcdf', 'ROF:netcdf', 'GLC:netcdf', 'WAV:netcdf', 'ESP:netcdf']


Any advice would be greatly appreciated.

Thank you,
Dr. Zhang

 

[tianxin]

Hello Altuntas, I have the similar question, do you have slove this error?

Thank you!