Scheduled Downtime
On Tuesday 24 October 2023 @ 5pm MT the forums will be in read only mode in preparation for the downtime. On Wednesday 25 October 2023 @ 5am MT, this website will be down for maintenance and expected to return online later in the morning.
Normal Operations
The forums are back online with normal operations. If you notice any issues or errors related to the forums, please reach out to help@ucar.edu

error (ld: symbol(s) not found for architecture x86_64) with ./cesm_build

Hello everyoneI am porting cesm1_2_2 on a Mac Pro with Yosemite (3.7 GHz Quad-Core Intel Xeon E5, 32 GB RAM). However, now I am stuck to this error with ./cesm_build. Here is the cesm.bldlog: Wed Jan 28 12:50:32 PST 2015 /Users/msafeeq/Case_Brazil/bld/cesm.bldlog.150128-125000
-------------------------------------------------------------------------
 Building a single executable version of CESM
-------------------------------------------------------------------------
cat: Srcfiles: No such file or directory
/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/Tools/mkSrcfiles
cp -f /Users/msafeeq/Case_Brazil/bld/cesm/obj/Filepath /Users/msafeeq/Case_Brazil/bld/cesm/obj/Deppath
/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/Tools/mkDepends  Deppath Srcfiles > /Users/msafeeq/Case_Brazil/bld/cesm/obj/Depends
gfortran  -c -I.  -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/local/include -I/opt/local/include -I/Users/msafeeq/Case_Brazil/bld/atm/obj -I/Users/msafeeq/Case_Brazil/bld/lnd/obj -I/Users/msafeeq/Case_Brazil/bld/ice/obj -I/Users/msafeeq/Case_Brazil/bld/ocn/obj -I/Users/msafeeq/Case_Brazil/bld/glc/obj -I/Users/msafeeq/Case_Brazil/bld/rof/obj -I/Users/msafeeq/Case_Brazil/bld/wav/obj -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/LSM/cesm1_2_2/models/csm_share/shr -I. -I/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/SourceMods/src.drv -I/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver -I/Users/msafeeq/Case_Brazil/bld/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -Dgeneric_darwin_gnu  -DNDEBUG -DMCT_INTERFACE -DNO_MPI2 -DNO_MPIMOD -DFORTRANUNDERSCORE -DNO_R16 -Dgeneric_darwin_gnu -DCPRGNU  -ffree-form   /Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/seq_diag_mct.F90
gfortran  -c -I.  -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/local/include -I/opt/local/include -I/Users/msafeeq/Case_Brazil/bld/atm/obj -I/Users/msafeeq/Case_Brazil/bld/lnd/obj -I/Users/msafeeq/Case_Brazil/bld/ice/obj -I/Users/msafeeq/Case_Brazil/bld/ocn/obj -I/Users/msafeeq/Case_Brazil/bld/glc/obj -I/Users/msafeeq/Case_Brazil/bld/rof/obj -I/Users/msafeeq/Case_Brazil/bld/wav/obj -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/LSM/cesm1_2_2/models/csm_share/shr -I. -I/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/SourceMods/src.drv -I/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver -I/Users/msafeeq/Case_Brazil/bld/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -Dgeneric_darwin_gnu  -DNDEBUG -DMCT_INTERFACE -DNO_MPI2 -DNO_MPIMOD -DFORTRANUNDERSCORE -DNO_R16 -Dgeneric_darwin_gnu -DCPRGNU  -ffree-form   /Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/seq_map_esmf.F90
gfortran  -c -I.  -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/local/include -I/opt/local/include -I/Users/msafeeq/Case_Brazil/bld/atm/obj -I/Users/msafeeq/Case_Brazil/bld/lnd/obj -I/Users/msafeeq/Case_Brazil/bld/ice/obj -I/Users/msafeeq/Case_Brazil/bld/ocn/obj -I/Users/msafeeq/Case_Brazil/bld/glc/obj -I/Users/msafeeq/Case_Brazil/bld/rof/obj -I/Users/msafeeq/Case_Brazil/bld/wav/obj -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/LSM/cesm1_2_2/models/csm_share/shr -I. -I/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/SourceMods/src.drv -I/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver -I/Users/msafeeq/Case_Brazil/bld/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -Dgeneric_darwin_gnu  -DNDEBUG -DMCT_INTERFACE -DNO_MPI2 -DNO_MPIMOD -DFORTRANUNDERSCORE -DNO_R16 -Dgeneric_darwin_gnu -DCPRGNU  -ffree-form   /Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/mrg_mod.F90
gfortran  -c -I.  -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/local/include -I/opt/local/include -I/Users/msafeeq/Case_Brazil/bld/atm/obj -I/Users/msafeeq/Case_Brazil/bld/lnd/obj -I/Users/msafeeq/Case_Brazil/bld/ice/obj -I/Users/msafeeq/Case_Brazil/bld/ocn/obj -I/Users/msafeeq/Case_Brazil/bld/glc/obj -I/Users/msafeeq/Case_Brazil/bld/rof/obj -I/Users/msafeeq/Case_Brazil/bld/wav/obj -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/LSM/cesm1_2_2/models/csm_share/shr -I. -I/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/SourceMods/src.drv -I/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver -I/Users/msafeeq/Case_Brazil/bld/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -Dgeneric_darwin_gnu  -DNDEBUG -DMCT_INTERFACE -DNO_MPI2 -DNO_MPIMOD -DFORTRANUNDERSCORE -DNO_R16 -Dgeneric_darwin_gnu -DCPRGNU  -ffree-form   /Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/seq_avdata_mod.F90
gfortran  -c -I.  -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/local/include -I/opt/local/include -I/Users/msafeeq/Case_Brazil/bld/atm/obj -I/Users/msafeeq/Case_Brazil/bld/lnd/obj -I/Users/msafeeq/Case_Brazil/bld/ice/obj -I/Users/msafeeq/Case_Brazil/bld/ocn/obj -I/Users/msafeeq/Case_Brazil/bld/glc/obj -I/Users/msafeeq/Case_Brazil/bld/rof/obj -I/Users/msafeeq/Case_Brazil/bld/wav/obj -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/LSM/cesm1_2_2/models/csm_share/shr -I. -I/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/SourceMods/src.drv -I/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver -I/Users/msafeeq/Case_Brazil/bld/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -Dgeneric_darwin_gnu  -DNDEBUG -DMCT_INTERFACE -DNO_MPI2 -DNO_MPIMOD -DFORTRANUNDERSCORE -DNO_R16 -Dgeneric_darwin_gnu -DCPRGNU  -ffree-form   /Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/seq_flux_mct.F90
gfortran  -c -I.  -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/local/include -I/opt/local/include -I/Users/msafeeq/Case_Brazil/bld/atm/obj -I/Users/msafeeq/Case_Brazil/bld/lnd/obj -I/Users/msafeeq/Case_Brazil/bld/ice/obj -I/Users/msafeeq/Case_Brazil/bld/ocn/obj -I/Users/msafeeq/Case_Brazil/bld/glc/obj -I/Users/msafeeq/Case_Brazil/bld/rof/obj -I/Users/msafeeq/Case_Brazil/bld/wav/obj -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/LSM/cesm1_2_2/models/csm_share/shr -I. -I/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/SourceMods/src.drv -I/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver -I/Users/msafeeq/Case_Brazil/bld/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -Dgeneric_darwin_gnu  -DNDEBUG -DMCT_INTERFACE -DNO_MPI2 -DNO_MPIMOD -DFORTRANUNDERSCORE -DNO_R16 -Dgeneric_darwin_gnu -DCPRGNU  -ffree-form   /Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/seq_hist_mod.F90
gfortran  -c -I.  -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/local/include -I/opt/local/include -I/Users/msafeeq/Case_Brazil/bld/atm/obj -I/Users/msafeeq/Case_Brazil/bld/lnd/obj -I/Users/msafeeq/Case_Brazil/bld/ice/obj -I/Users/msafeeq/Case_Brazil/bld/ocn/obj -I/Users/msafeeq/Case_Brazil/bld/glc/obj -I/Users/msafeeq/Case_Brazil/bld/rof/obj -I/Users/msafeeq/Case_Brazil/bld/wav/obj -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/LSM/cesm1_2_2/models/csm_share/shr -I. -I/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/SourceMods/src.drv -I/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver -I/Users/msafeeq/Case_Brazil/bld/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -Dgeneric_darwin_gnu  -DNDEBUG -DMCT_INTERFACE -DNO_MPI2 -DNO_MPIMOD -DFORTRANUNDERSCORE -DNO_R16 -Dgeneric_darwin_gnu -DCPRGNU  -ffree-form   /Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/seq_mctext_mod.F90
gfortran  -c -I.  -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/local/include -I/opt/local/include -I/Users/msafeeq/Case_Brazil/bld/atm/obj -I/Users/msafeeq/Case_Brazil/bld/lnd/obj -I/Users/msafeeq/Case_Brazil/bld/ice/obj -I/Users/msafeeq/Case_Brazil/bld/ocn/obj -I/Users/msafeeq/Case_Brazil/bld/glc/obj -I/Users/msafeeq/Case_Brazil/bld/rof/obj -I/Users/msafeeq/Case_Brazil/bld/wav/obj -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/LSM/cesm1_2_2/models/csm_share/shr -I. -I/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/SourceMods/src.drv -I/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver -I/Users/msafeeq/Case_Brazil/bld/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -Dgeneric_darwin_gnu  -DNDEBUG -DMCT_INTERFACE -DNO_MPI2 -DNO_MPIMOD -DFORTRANUNDERSCORE -DNO_R16 -Dgeneric_darwin_gnu -DCPRGNU  -ffree-form   /Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/seq_rest_mod.F90
gfortran  -c -I.  -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/local/include -I/opt/local/include -I/Users/msafeeq/Case_Brazil/bld/atm/obj -I/Users/msafeeq/Case_Brazil/bld/lnd/obj -I/Users/msafeeq/Case_Brazil/bld/ice/obj -I/Users/msafeeq/Case_Brazil/bld/ocn/obj -I/Users/msafeeq/Case_Brazil/bld/glc/obj -I/Users/msafeeq/Case_Brazil/bld/rof/obj -I/Users/msafeeq/Case_Brazil/bld/wav/obj -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/LSM/cesm1_2_2/models/csm_share/shr -I. -I/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/SourceMods/src.drv -I/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver -I/Users/msafeeq/Case_Brazil/bld/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -Dgeneric_darwin_gnu  -DNDEBUG -DMCT_INTERFACE -DNO_MPI2 -DNO_MPIMOD -DFORTRANUNDERSCORE -DNO_R16 -Dgeneric_darwin_gnu -DCPRGNU  -ffree-form   /Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/seq_map_mod.F90
gfortran  -c -I.  -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/local/include -I/opt/local/include -I/Users/msafeeq/Case_Brazil/bld/atm/obj -I/Users/msafeeq/Case_Brazil/bld/lnd/obj -I/Users/msafeeq/Case_Brazil/bld/ice/obj -I/Users/msafeeq/Case_Brazil/bld/ocn/obj -I/Users/msafeeq/Case_Brazil/bld/glc/obj -I/Users/msafeeq/Case_Brazil/bld/rof/obj -I/Users/msafeeq/Case_Brazil/bld/wav/obj -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/LSM/cesm1_2_2/models/csm_share/shr -I. -I/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/SourceMods/src.drv -I/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver -I/Users/msafeeq/Case_Brazil/bld/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -Dgeneric_darwin_gnu  -DNDEBUG -DMCT_INTERFACE -DNO_MPI2 -DNO_MPIMOD -DFORTRANUNDERSCORE -DNO_R16 -Dgeneric_darwin_gnu -DCPRGNU  -ffree-form   /Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/seq_domain_mct.F90
gfortran  -c -I.  -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/local/include -I/opt/local/include -I/Users/msafeeq/Case_Brazil/bld/atm/obj -I/Users/msafeeq/Case_Brazil/bld/lnd/obj -I/Users/msafeeq/Case_Brazil/bld/ice/obj -I/Users/msafeeq/Case_Brazil/bld/ocn/obj -I/Users/msafeeq/Case_Brazil/bld/glc/obj -I/Users/msafeeq/Case_Brazil/bld/rof/obj -I/Users/msafeeq/Case_Brazil/bld/wav/obj -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/LSM/cesm1_2_2/models/csm_share/shr -I. -I/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/SourceMods/src.drv -I/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver -I/Users/msafeeq/Case_Brazil/bld/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -Dgeneric_darwin_gnu  -DNDEBUG -DMCT_INTERFACE -DNO_MPI2 -DNO_MPIMOD -DFORTRANUNDERSCORE -DNO_R16 -Dgeneric_darwin_gnu -DCPRGNU  -ffree-form   /Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/seq_frac_mct.F90
gfortran  -c -I.  -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/local/include -I/opt/local/include -I/Users/msafeeq/Case_Brazil/bld/atm/obj -I/Users/msafeeq/Case_Brazil/bld/lnd/obj -I/Users/msafeeq/Case_Brazil/bld/ice/obj -I/Users/msafeeq/Case_Brazil/bld/ocn/obj -I/Users/msafeeq/Case_Brazil/bld/glc/obj -I/Users/msafeeq/Case_Brazil/bld/rof/obj -I/Users/msafeeq/Case_Brazil/bld/wav/obj -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/LSM/cesm1_2_2/models/csm_share/shr -I. -I/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/SourceMods/src.drv -I/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver -I/Users/msafeeq/Case_Brazil/bld/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -Dgeneric_darwin_gnu  -DNDEBUG -DMCT_INTERFACE -DNO_MPI2 -DNO_MPIMOD -DFORTRANUNDERSCORE -DNO_R16 -Dgeneric_darwin_gnu -DCPRGNU  -ffree-form   /Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:208.52:

   type (ESMF_Clock), target, SAVE       :: EClock_a
                                                    1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:207.52:

   type (ESMF_Clock), target, SAVE       :: EClock_d      ! driver clock
                                                    1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:212.52:

   type (ESMF_Clock), target, SAVE       :: EClock_g
                                                    1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:211.52:

   type (ESMF_Clock), target, SAVE       :: EClock_i
                                                    1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:209.52:

   type (ESMF_Clock), target, SAVE       :: EClock_l
                                                    1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:210.52:

   type (ESMF_Clock), target, SAVE       :: EClock_o
                                                    1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:213.52:

   type (ESMF_Clock), target, SAVE       :: EClock_r
                                                    1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:214.52:

   type (ESMF_Clock), target, SAVE       :: EClock_w
                                                    1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:160.51:

   type(seq_map), SAVE :: mapper_Ca2x(num_inst_atm)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:172.51:

   type(seq_map), SAVE :: mapper_Cg2x(num_inst_glc)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:168.51:

   type(seq_map), SAVE :: mapper_Ci2x(num_inst_ice)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:162.51:

   type(seq_map), SAVE :: mapper_Cl2x(num_inst_lnd)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:170.51:

   type(seq_map), SAVE :: mapper_Co2x(num_inst_ocn)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:166.51:

   type(seq_map), SAVE :: mapper_Cr2x(num_inst_rof)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:164.51:

   type(seq_map), SAVE :: mapper_Cs2x(num_inst_lnd)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:174.51:

   type(seq_map), SAVE :: mapper_Cw2x(num_inst_wav)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:161.51:

   type(seq_map), SAVE :: mapper_Cx2a(num_inst_atm)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:173.51:

   type(seq_map), SAVE :: mapper_Cx2g(num_inst_glc)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:169.51:

   type(seq_map), SAVE :: mapper_Cx2i(num_inst_ice)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:163.51:

   type(seq_map), SAVE :: mapper_Cx2l(num_inst_lnd)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:171.51:

   type(seq_map), SAVE :: mapper_Cx2o(num_inst_ocn)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:167.51:

   type(seq_map), SAVE :: mapper_Cx2r(num_inst_rof)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:165.51:

   type(seq_map), SAVE :: mapper_Cx2s(num_inst_lnd)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:175.51:

   type(seq_map), SAVE :: mapper_Cx2w(num_inst_wav)
                                                   1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:183.37:

   type(seq_map), SAVE :: mapper_Fa2l
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:179.37:

   type(seq_map), SAVE :: mapper_Fa2o
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:188.37:

   type(seq_map), SAVE :: mapper_Fi2a
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:185.37:

   type(seq_map), SAVE :: mapper_Fl2a
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:186.37:

   type(seq_map), SAVE :: mapper_Fl2r
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:181.37:

   type(seq_map), SAVE :: mapper_Fo2a
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:191.37:

   type(seq_map), SAVE :: mapper_Fr2l
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:189.37:

   type(seq_map), SAVE :: mapper_Fr2o
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:190.37:

   type(seq_map), SAVE :: mapper_Rr2o
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:182.37:

   type(seq_map), SAVE :: mapper_Sa2l
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:177.37:

   type(seq_map), SAVE :: mapper_Sa2o
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:197.37:

   type(seq_map), SAVE :: mapper_Sa2w
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:195.38:

   type(seq_map), SAVE :: mapper_SFg2s
                                      1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:193.38:

   type(seq_map), SAVE :: mapper_SFi2o
                                      1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:194.38:

   type(seq_map), SAVE :: mapper_SFo2i
                                      1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:196.38:

   type(seq_map), SAVE :: mapper_SFs2g
                                      1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:187.37:

   type(seq_map), SAVE :: mapper_Si2a
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:199.37:

   type(seq_map), SAVE :: mapper_Si2w
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:184.37:

   type(seq_map), SAVE :: mapper_Sl2a
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:180.37:

   type(seq_map), SAVE :: mapper_So2a
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:198.37:

   type(seq_map), SAVE :: mapper_So2w
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:192.37:

   type(seq_map), SAVE :: mapper_Sr2l
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:200.37:

   type(seq_map), SAVE :: mapper_Sw2o
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:178.37:

   type(seq_map), SAVE :: mapper_Va2o
                                     1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_comp_mod.F90:206.49:

   type (seq_timemgr_type), SAVE :: seq_SyncClock ! array of all clocks & alarm
                                                 1
Warning: Legacy Extension: Duplicate SAVE attribute specified at (1)
gfortran  -c -I.  -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/opt/local/include -I/opt/local/include -I/Users/msafeeq/Case_Brazil/bld/atm/obj -I/Users/msafeeq/Case_Brazil/bld/lnd/obj -I/Users/msafeeq/Case_Brazil/bld/ice/obj -I/Users/msafeeq/Case_Brazil/bld/ocn/obj -I/Users/msafeeq/Case_Brazil/bld/glc/obj -I/Users/msafeeq/Case_Brazil/bld/rof/obj -I/Users/msafeeq/Case_Brazil/bld/wav/obj -I/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/include -I/Users/msafeeq/LSM/cesm1_2_2/models/csm_share/shr -I. -I/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/SourceMods/src.drv -I/Users/msafeeq/LSM/cesm1_2_2/models/drv/driver -I/Users/msafeeq/Case_Brazil/bld/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fno-range-check -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -Dgeneric_darwin_gnu  -DNDEBUG -DMCT_INTERFACE -DNO_MPI2 -DNO_MPIMOD -DFORTRANUNDERSCORE -DNO_R16 -Dgeneric_darwin_gnu -DCPRGNU  -ffree-form   /Users/msafeeq/LSM/cesm1_2_2/models/drv/driver/ccsm_driver.F90
gfortran  -o /Users/msafeeq/Case_Brazil/bld/cesm.exe ccsm_comp_mod.o ccsm_driver.o mrg_mod.o seq_avdata_mod.o seq_diag_mct.o seq_domain_mct.o seq_flux_mct.o seq_frac_mct.o seq_hist_mod.o seq_map_esmf.o seq_map_mod.o seq_mctext_mod.o seq_rest_mod.o  -L/Users/msafeeq/Case_Brazil/bld/lib/ -latm  -L/Users/msafeeq/Case_Brazil/bld/lib/ -lice  -L/Users/msafeeq/Case_Brazil/bld/lib/ -llnd  -L/Users/msafeeq/Case_Brazil/bld/lib/ -locn  -L/Users/msafeeq/Case_Brazil/bld/lib/ -lrof  -L/Users/msafeeq/Case_Brazil/bld/lib/ -lglc  -L/Users/msafeeq/Case_Brazil/bld/lib/ -lwav -L/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -lcsm_share -L/Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/lib -lpio -lgptl -lmct -lmpeu -L/opt/local/lib -lnetcdff -L/opt/local/lib -Wl,-headerpad_max_install_names -lnetcdf -lnetcdf -L/opt/local/lib -lpnetcdf  /Users/msafeeq/Case_Brazil/bld/gnu/mpi-serial/nodebug/nothreads/mct/mpi-serial/libmpi-serial.a
Undefined symbols for architecture x86_64:
  "_MPI_Error_class", referenced from:
      _ncmpii_handle_error in libpnetcdf.a(error.o)
  "_MPI_File_close", referenced from:
      _ncmpiio_close in libpnetcdf.a(mpincio.o)
  "_MPI_File_delete", referenced from:
      _ncmpi_delete in libpnetcdf.a(mpinetcdf.o)
      _ncmpiio_close in libpnetcdf.a(mpincio.o)
  "_MPI_File_get_info", referenced from:
      _ncmpiio_create in libpnetcdf.a(mpincio.o)
      _ncmpiio_open in libpnetcdf.a(mpincio.o)
      _ncmpiio_get_hint in libpnetcdf.a(mpincio.o)
  "_MPI_File_open", referenced from:
      _ncmpii_check_mpifh in libpnetcdf.a(mpinetcdf.o)
      _ncmpiio_create in libpnetcdf.a(mpincio.o)
      _ncmpiio_open in libpnetcdf.a(mpincio.o)
  "_MPI_File_read", referenced from:
      _ncmpii_wait_getput in libpnetcdf.a(nonblocking.o)
      _ncmpii_getput_vars in libpnetcdf.a(getput.o)
  "_MPI_File_read_all", referenced from:
      _ncmpii_getput_zero_req in libpnetcdf.a(nonblocking.o)
      _ncmpii_wait_getput in libpnetcdf.a(nonblocking.o)
      _ncmpii_getput_vars in libpnetcdf.a(getput.o)
  "_MPI_File_read_at", referenced from:
      _ncmpii_read_numrecs in libpnetcdf.a(nc.o)
      _hdr_fetch in libpnetcdf.a(header.o)
  "_MPI_File_read_at_all", referenced from:
      _ncmpiio_move in libpnetcdf.a(mpincio.o)
  "_MPI_File_set_view", referenced from:
      _ncmpii_getput_zero_req in libpnetcdf.a(nonblocking.o)
      _ncmpii_wait_getput in libpnetcdf.a(nonblocking.o)
      _ncmpii_getput_vars in libpnetcdf.a(getput.o)
  "_MPI_File_sync", referenced from:
      _ncmpii_end_indep_data in libpnetcdf.a(mpinetcdf.o)
      _ncmpi_begin_indep_data in libpnetcdf.a(mpinetcdf.o)
      _ncmpiio_sync in libpnetcdf.a(mpincio.o)
  "_MPI_File_write", referenced from:
      _ncmpii_wait_getput in libpnetcdf.a(nonblocking.o)
      _ncmpii_getput_vars in libpnetcdf.a(getput.o)
  "_MPI_File_write_all", referenced from:
      _ncmpii_getput_zero_req in libpnetcdf.a(nonblocking.o)
      _ncmpii_wait_getput in libpnetcdf.a(nonblocking.o)
      _ncmpii_getput_vars in libpnetcdf.a(getput.o)
  "_MPI_File_write_at", referenced from:
      _write_NC in libpnetcdf.a(nc.o)
      _ncmpii_write_numrecs in libpnetcdf.a(nc.o)
      _ncmpii_write_header in libpnetcdf.a(header.o)
  "_MPI_File_write_at_all", referenced from:
      _ncmpiio_move in libpnetcdf.a(mpincio.o)
  "_MPI_Get_address", referenced from:
      _ncmpii_abuf_free.isra.0 in libpnetcdf.a(nonblocking.o)
      _ncmpii_wait_getput in libpnetcdf.a(nonblocking.o)
      _hdr_fetch in libpnetcdf.a(header.o)
      _hdr_check_buffer in libpnetcdf.a(header.o)
      _hdr_get_NC_name in libpnetcdf.a(header.o)
      _hdr_get_NC_attrarray in libpnetcdf.a(header.o)
      _ncmpii_hdr_get_NC in libpnetcdf.a(header.o)
      ...
  "_MPI_Get_count", referenced from:
      _write_NC in libpnetcdf.a(nc.o)
      _ncmpii_read_numrecs in libpnetcdf.a(nc.o)
      _ncmpii_write_numrecs in libpnetcdf.a(nc.o)
      _ncmpii_wait_getput in libpnetcdf.a(nonblocking.o)
      _ncmpii_getput_vars in libpnetcdf.a(getput.o)
      _hdr_fetch in libpnetcdf.a(header.o)
      _ncmpii_write_header in libpnetcdf.a(header.o)
      ...
  "_MPI_Info_create", referenced from:
      _ncmpi_create in libpnetcdf.a(mpinetcdf.o)
      _ncmpi_open in libpnetcdf.a(mpinetcdf.o)
      _ncmpii_subfile_create in libpnetcdf.a(subfile.o)
  "_MPI_Info_dup", referenced from:
      _ncmpi_inq_file_info in libpnetcdf.a(mpinetcdf.o)
  "_MPI_Info_free", referenced from:
      _ncmpi_create in libpnetcdf.a(mpinetcdf.o)
      _ncmpi_open in libpnetcdf.a(mpinetcdf.o)
      _ncmpii_subfile_create in libpnetcdf.a(subfile.o)
      _ncmpiio_free in libpnetcdf.a(mpincio.o)
      _ncmpiio_get_hint in libpnetcdf.a(mpincio.o)
  "_MPI_Info_get", referenced from:
      _ncmpi_create in libpnetcdf.a(mpinetcdf.o)
      _ncmpi_open in libpnetcdf.a(mpinetcdf.o)
      _ncmpi_inq_striping in libpnetcdf.a(mpinetcdf.o)
      _ncmpii_enddef in libpnetcdf.a(nc.o)
      _ncmpii__enddef in libpnetcdf.a(nc.o)
      _ncmpiio_extract_hints.part.0 in libpnetcdf.a(mpincio.o)
      _ncmpiio_get_hint in libpnetcdf.a(mpincio.o)
      ...
  "_MPI_Info_set", referenced from:
      _ncmpi_create in libpnetcdf.a(mpinetcdf.o)
      _ncmpi_open in libpnetcdf.a(mpinetcdf.o)
      _ncmpi_inq_file_info in libpnetcdf.a(mpinetcdf.o)
      _ncmpii_NC_enddef in libpnetcdf.a(nc.o)
  "_MPI_Pack_size", referenced from:
      _ncmpii_data_repack in libpnetcdf.a(ncmpidtype.o)
  "_MPI_Type_commit", referenced from:
      _ncmpii_construct_filetypes.part.7 in libpnetcdf.a(nonblocking.o)
      _ncmpii_wait_getput in libpnetcdf.a(nonblocking.o)
      _ncmpii_concatenate_datatypes in libpnetcdf.a(nonblocking.o)
      _ncmpii_vara_create_filetype in libpnetcdf.a(filetype.o)
      _ncmpii_vars_create_filetype in libpnetcdf.a(filetype.o)
      _ncmpii_getput_varm in libpnetcdf.a(getput.o)
      _ncmpii_igetput_varm in libpnetcdf.a(i_getput.o)
      ...
  "_MPI_Type_contiguous", referenced from:
      _ncmpii_vara_create_filetype in libpnetcdf.a(filetype.o)
  "_MPI_Type_create_hindexed", referenced from:
      _ncmpii_wait_getput in libpnetcdf.a(nonblocking.o)
  "_MPI_Type_create_hvector", referenced from:
      _ncmpii_vara_create_filetype in libpnetcdf.a(filetype.o)
      _ncmpii_vars_create_filetype in libpnetcdf.a(filetype.o)
      _ncmpii_getput_varm in libpnetcdf.a(getput.o)
      _ncmpii_igetput_varm in libpnetcdf.a(i_getput.o)
  "_MPI_Type_create_struct", referenced from:
      _ncmpii_construct_filetypes.part.7 in libpnetcdf.a(nonblocking.o)
      _ncmpii_wait_getput in libpnetcdf.a(nonblocking.o)
      _ncmpii_concatenate_datatypes in libpnetcdf.a(nonblocking.o)
  "_MPI_Type_create_subarray", referenced from:
      _ncmpii_vara_create_filetype in libpnetcdf.a(filetype.o)
  "_MPI_Type_free", referenced from:
      _ncmpii_construct_filetypes.part.7 in libpnetcdf.a(nonblocking.o)
      _ncmpii_wait_getput in libpnetcdf.a(nonblocking.o)
      _ncmpii_wait in libpnetcdf.a(nonblocking.o)
      _ncmpii_vara_create_filetype in libpnetcdf.a(filetype.o)
      _ncmpii_vars_create_filetype in libpnetcdf.a(filetype.o)
      _ncmpii_getput_vars in libpnetcdf.a(getput.o)
      _ncmpii_getput_varm in libpnetcdf.a(getput.o)
      ...
  "_MPI_Type_get_contents", referenced from:
      _ncmpii_dtype_decode in libpnetcdf.a(ncmpidtype.o)
  "_MPI_Type_get_envelope", referenced from:
      _ncmpii_dtype_decode in libpnetcdf.a(ncmpidtype.o)
  "_MPI_Type_get_extent", referenced from:
      _ncmpii_subfile_getput_vars in libpnetcdf.a(subfile.o)
  "_MPI_Type_hvector", referenced from:
      _ncmpii_vara_create_filetype in libpnetcdf.a(filetype.o)
  "_MPI_Type_size", referenced from:
      _ncmpii_wait in libpnetcdf.a(nonblocking.o)
      _ncmpii_dtype_decode in libpnetcdf.a(ncmpidtype.o)
      _ncmpii_data_repack in libpnetcdf.a(ncmpidtype.o)
  "_MPI_Type_struct", referenced from:
      _ncmpii_vara_create_filetype in libpnetcdf.a(filetype.o)
  "_MPI_Type_vector", referenced from:
      _ncmpii_getput_varm in libpnetcdf.a(getput.o)
      _ncmpii_igetput_varm in libpnetcdf.a(i_getput.o)
ld: symbol(s) not found for architecture x86_64
collect2: error: ld returned 1 exit status
/Users/msafeeq/LSM/cesm1_2_2/Case_Brazil/Tools/Makefile:625: recipe for target '/Users/msafeeq/Case_Brazil/bld/cesm.exe' failed
gmake: *** [/Users/msafeeq/Case_Brazil/bld/cesm.exe] Error 1
 

jedwards

CSEG and Liaisons
Staff member
It looks like you are trying to link pnetcdf with an mpi-serial build, they are incompatable.   Take pnetcdf out of the build and just use netcdf.  
 
Top