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Error!!-> mkdir: cannot create directory `mct': File exists, configure: error: in test1/bld/intel/mpich2/nodebug/nothreads/mct':

M

mhrzmomeni@yahoo_com

Member
Hi guys,I am building and running CESM on my university servers. But during running CESM, I got a strange error in the following: CESM BUILDEXE SCRIPT STARTINGrm: No match. COMPILER is intel - Build Libraries: mct gptl pio csm_share Mon Feb 27 15:06:03 PST 2017 /home/myuser/cesm1_2_2/scripts/test1/test1/bld/intel/mpich2/nodebug/nothreads/mct.bldlog.170227-150600ERROR: buildlib.mct failed, see /home/myuser/cesm1_2_2/scripts/test1/test1/bld/intel/mpich2/nodebug/nothreads/mct.bldlog.170227-150600 ERROR: cat /home/myuser/cesm1_2_2/scripts/test1/test1/bld/intel/mpich2/nodebug/nothreads/mct.bldlog.170227-150600
When I check the mct.bldlog.170227-150600 file, There are the following comments:
setenv MCT_DIR /home/myuser/cesm1_2_2/models/utils/mctsetenv LIBDIR /home/myuser/cesm1_2_2/scripts/test1/test1/bld/intel/mpich2/nodebug/nothreadssetenv MCT_LIBDIR /home/myuser/cesm1_2_2/scripts/test1/test1/bld/intel/mpich2/nodebug/nothreads/mctecho MCT_LIBDIR /home/myuser/cesm1_2_2/scripts/test1/test1/bld/intel/mpich2/nodebug/nothreads/mctMCT_LIBDIR /home/myuser/cesm1_2_2/scripts/test1/test1/bld/intel/mpich2/nodebug/nothreads/mctcd /home/myuser/cesm1_2_2/scripts/test1/test1/bld/intel/mpich2/nodebug/nothreads/mctecho Copying source to CCSM EXEROOT...Copying source to CCSM EXEROOT...cp /home/myuser/cesm1_2_2/models/utils/mct/Makefile .mkdir mctmkdir: cannot create directory `mct': File existscp /home/myuser/cesm1_2_2/models/utils/mct/mct/Makefile mctmkdir mpeumkdir: cannot create directory `mpeu': File existscp /home/myuser/cesm1_2_2/models/utils/mct/mpeu/Makefile mpeumkdir mpi-serialmkdir: cannot create directory `mpi-serial': File existscp /home/myuser/cesm1_2_2/models/utils/mct/mpeu/Makefile mpeucp /home/myuser/cesm1_2_2/models/utils/mct/mpi-serial/Makefile mpi-serialset runconf = 0set runclean = 0echo Running configure...Running configure...echo for OS=LINUX MACH=userdefinedfor OS=LINUX MACH=userdefinedgmake -f /home/myuser/cesm1_2_2/scripts/test1/Tools/Makefile /home/myuser/cesm1_2_2/scripts/test1/test1/bld/intel/mpich2/nodebug/nothreads/mct/Makefile.confSHAREDLIBROOT |/home/myuser/cesm1_2_2/scripts/test1/test1/bld| SHAREDPATH |/home/myuser/cesm1_2_2/scripts/test1/test1/bld/intel/mpich2/nodebug/nothreads|checking whether the C compiler works... noconfigure: error: in `/home/myuser/cesm1_2_2/scripts/test1/test1/bld/intel/mpich2/nodebug/nothreads/mct':configure: error: C compiler cannot create executablesSee `config.log' for more detailsgmake: *** [/home/myuser/cesm1_2_2/scripts/test1/test1/bld/intel/mpich2/nodebug/nothreads/mct/Makefile.conf] Error 77if ( 0 == 1 ) thencp -p Makefile.conf Makefile.conf.oldcp: cannot stat `Makefile.conf': No such file or directorygmakeMakefile:4: Makefile.conf: No such file or directorygmake: *** No rule to make target `Makefile.conf'.  Stop.exit 1
And, this is config.log file: This file contains any messages produced by compilers whilerunning configure, to aid debugging if configure makes a mistake. It was created by MCT configure 2.8, which wasgenerated by GNU Autoconf 2.69.  Invocation command line was   $ /home/mmomeni/cesm1_2_2/models/utils/mct/configure CC=icc  FC=ifort  MPICC=mpicc   MPIFC=mpif90  FCFLAGS=-fp-model source -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs  -O2  -free  -I.  -I/home/mmomeni/cesm1_2_2/scripts/test1/test1/bld/intel/mpich2/nodebug/nothreads/include -I/home/mmomeni/cesm1_2_2/scripts/test1/test1/bld/intel/mpich2/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/home/mmomeni/cesm1_2_2/scripts/test1/test1/bld/intel/mpich2/nodebug/nothreads/include -I/home/mmomeni/cesm1_2_2/models/csm_share/shr CPPDEFS= -DLINUX  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLINUX -DCPRINTEL  -DHAVE_SLASHPROC CFLAGS=-O2 -fp-model precise   -DLINUX  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLINUX -DCPRINTEL  -DHAVE_SLASHPROC -I.. -I.  -I/home/mmomeni/cesm1_2_2/scripts/test1/test1/bld/intel/mpich2/nodebug/nothreads/include -I/home/mmomeni/cesm1_2_2/scripts/test1/test1/bld/intel/mpich2/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/home/mmomeni/cesm1_2_2/scripts/test1/test1/bld/intel/mpich2/nodebug/nothreads/include -I/home/mmomeni/cesm1_2_2/models/csm_share/shr NETCDF_PATH= LDFLAGS= LIBS= --srcdir /home/mmomeni/cesm1_2_2/models/utils/mct ## --------- #### Platform. #### --------- ## hostname = aeolus.wsu.eduuname -m = x86_64uname -r = 2.6.32-504.16.2.el6.x86_64uname -s = Linuxuname -v = #1 SMP Wed Apr 22 06:48:29 UTC 2015 /usr/bin/uname -p = unknown/bin/uname -X     = unknown /bin/arch              = x86_64/usr/bin/arch -k       = unknown/usr/convex/getsysinfo = unknown/usr/bin/hostinfo      = unknown/bin/machine           = unknown/usr/bin/oslevel       = unknown/bin/universe          = unknown PATH: /share/apps/perl-5.20.1/binPATH: /usr/lib64/qt-3.3/binPATH: /usr/local/binPATH: /binPATH: /usr/binPATH: /usr/local/sbinPATH: /usr/sbinPATH: /sbinPATH: /usr/local/cuda/binPATH: /opt/ganglia/binPATH: /opt/ganglia/sbinPATH: /opt/ibutils/binPATH: /usr/java/latest/binPATH: /opt/maui/sbinPATH: /opt/maui/binPATH: /opt/maven/binPATH: /opt/pvfs2/binPATH: /home/mmomeni/bin  ## ----------- #### Core tests. #### ----------- ## configure:2360: checking for C compiler versionconfigure:2369: icc  --version >&5/home/mmomeni/cesm1_2_2/models/utils/mct/configure: line 2371: icc: command not foundconfigure:2380: $? = 127configure:2369: icc  -v >&5/home/mmomeni/cesm1_2_2/models/utils/mct/configure: line 2371: icc: command not foundconfigure:2380: $? = 127configure:2369: icc  -V >&5/home/mmomeni/cesm1_2_2/models/utils/mct/configure: line 2371: icc: command not foundconfigure:2380: $? = 127configure:2369: icc  -qversion >&5/home/mmomeni/cesm1_2_2/models/utils/mct/configure: line 2371: icc: command not foundconfigure:2380: $? = 127configure:2400: checking whether the C compiler worksconfigure:2422: icc  -O2 -fp-model precise   -DLINUX  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLINUX -DCPRINTEL  -DHAVE_SLASHPROC -I.. -I.  -I/home/mmomeni/cesm1_2_2/scripts/test1/test1/bld/intel/mpich2/nodebug/nothreads/include -I/home/mmomeni/cesm1_2_2/scripts/test1/test1/bld/intel/mpich2/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/home/mmomeni/cesm1_2_2/scripts/test1/test1/bld/intel/mpich2/nodebug/nothreads/include -I/home/mmomeni/cesm1_2_2/models/csm_share/shr   conftest.c  >&5/home/mmomeni/cesm1_2_2/models/utils/mct/configure: line 2424: icc: command not foundconfigure:2426: $? = 127configure:2464: result: noconfigure: failed program was:| /* confdefs.h */| #define PACKAGE_NAME "MCT"| #define PACKAGE_TARNAME "mct"| #define PACKAGE_VERSION "2.8"| #define PACKAGE_STRING "MCT 2.8"| #define PACKAGE_BUGREPORT ""| #define PACKAGE_URL ""| /* end confdefs.h.  */|| int| main ()| {||   ;|   return 0;| }configure:2469: error: in `/home/mmomeni/cesm1_2_2/scripts/test1/test1/bld/intel/mpich2/nodebug/nothreads/mct':configure:2471: error: C compiler cannot create executablesSee `config.log' for more details ## ---------------- #### Cache variables. #### ---------------- ## ac_cv_env_AR_set=ac_cv_env_AR_value=ac_cv_env_BABELROOT_set=ac_cv_env_BABELROOT_value=ac_cv_env_BIT64_set=ac_cv_env_BIT64_value=ac_cv_env_CC_set=setac_cv_env_CC_value='icc 'ac_cv_env_CFLAGS_set=setac_cv_env_CFLAGS_value='-O2 -fp-model precise   -DLINUX  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLINUX -DCPRINTEL  -DHAVE_SLASHPROC -I.. -I.  -I/home/mmomeni/cesm1_2_2/scripts/test1/test1/bld/intel/mpich2/nodebug/nothreads/include -I/home/mmomeni/cesm1_2_2/scripts/test1/test1/bld/intel/mpich2/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/home/mmomeni/cesm1_2_2/scripts/test1/test1/bld/intel/mpich2/nodebug/nothreads/include -I/home/mmomeni/cesm1_2_2/models/csm_share/shr'ac_cv_env_COMPILER_ROOT_set=ac_cv_env_COMPILER_ROOT_value=ac_cv_env_CPPFLAGS_set=ac_cv_env_CPPFLAGS_value=ac_cv_env_CPP_set=ac_cv_env_CPP_value=ac_cv_env_DEBUG_set=setac_cv_env_DEBUG_value=FALSEac_cv_env_ENDIAN_set=ac_cv_env_ENDIAN_value=ac_cv_env_FCFLAGS_set=setac_cv_env_FCFLAGS_value='-fp-model source -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs  -O2  -free  -I.  -I/home/mmomeni/cesm1_2_2/scripts/test1/test1/bld/intel/mpich2/nodebug/nothreads/include -I/home/mmomeni/cesm1_2_2/scripts/test1/test1/bld/intel/mpich2/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/home/mmomeni/cesm1_2_2/scripts/test1/test1/bld/intel/mpich2/nodebug/nothreads/include -I/home/mmomeni/cesm1_2_2/models/csm_share/shr'ac_cv_env_FC_set=setac_cv_env_FC_value='ifort 'ac_cv_env_FORT_SIZE_set=ac_cv_env_FORT_SIZE_value=ac_cv_env_FPPFLAGS_set=ac_cv_env_FPPFLAGS_value=ac_cv_env_FPP_set=ac_cv_env_FPP_value=ac_cv_env_INCLUDEFLAG_set=ac_cv_env_INCLUDEFLAG_value=ac_cv_env_INCLUDEPATH_set=ac_cv_env_INCLUDEPATH_value=ac_cv_env_LDFLAGS_set=setac_cv_env_LDFLAGS_value=ac_cv_env_LIBS_set=setac_cv_env_LIBS_value=ac_cv_env_MPIFC_set=setac_cv_env_MPIFC_value='mpif90 'ac_cv_env_MPIHEADER_set=ac_cv_env_MPIHEADER_value=ac_cv_env_MPILIBS_set=setac_cv_env_MPILIBS_value=openmpi,mpich,mpt,mpt,ibm,mpi-serialac_cv_env_OPT_set=ac_cv_env_OPT_value=ac_cv_env_PROGFCFLAGS_set=ac_cv_env_PROGFCFLAGS_value=ac_cv_env_RANLIB_set=ac_cv_env_RANLIB_value=ac_cv_env_REAL8_set=ac_cv_env_REAL8_value=ac_cv_env_RANLIB_value=ac_cv_env_REAL8_set=ac_cv_env_REAL8_value=ac_cv_env_build_alias_set=ac_cv_env_build_alias_value=ac_cv_env_host_alias_set=ac_cv_env_host_alias_value=ac_cv_env_target_alias_set=ac_cv_env_target_alias_value= ## ----------------- #### Output variables. #### ----------------- ##AR=''BABELROOT=''BIT64=''CC='icc 'CFLAGS='-O2 -fp-model precise   -DLINUX  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLINUX -DCPRINTEL  -DHAVE_SLASHPROC -I.. -I.  -I/home/mmomeni/cesm1_2_2/scripts/test1/test1/bld/intel/mpich2/nodebug/nothreads/include -I/home/mmomeni/cesm1_2_2/scripts/test1/test1/bld/intel/mpich2/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/home/mmomeni/cesm1_2_2/scripts/test1/test1/bld/intel/mpich2/nodebug/nothreads/include -I/home/mmomeni/cesm1_2_2/models/csm_share/shr'COMPILER_ROOT=''CPP=''CPPDEFS=' -DLINUX  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLINUX -DCPRINTEL  -DHAVE_SLASHPROC'CPPFLAGS=''CRULE=''DEBUG='FALSE'DEFS=''ECHO_C=''ECHO_N='-n'ECHO_T=''EGREP=''ENDIAN=''EXEEXT=''FC='ifort 'FCFLAGS='-fp-model source -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs  -O2  -free  -I.  -I/home/mmomeni/cesm1_2_2/scripts/test1/test1/bld/intel/mpich2/nodebug/nothreads/include -I/home/mmomeni/cesm1_2_2/scripts/test1/test1/bld/intel/mpich2/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/home/mmomeni/cesm1_2_2/scripts/test1/test1/bld/intel/mpich2/nodebug/nothreads/include -I/home/mmomeni/cesm1_2_2/models/csm_share/shr'FCFLAGS_F90=''FCFLAGS_F=''FCLIBS=''FC_DEFINE=''FORT_SIZE=''FPP=''FPPFLAGS=''GREP=''INCLUDEFLAG=''INCLUDEPATH=''LDFLAGS=''LIBOBJS=''LIBS=''LTLIBOBJS=''MPIFC='mpif90 'MPIHEADER=''MPILIBS='openmpi,mpich,mpt,mpt,ibm,mpi-serial'MPISERPATH=''OBJEXT=''OPT=''PACKAGE_BUGREPORT=''PACKAGE_NAME='MCT'PACKAGE_STRING='MCT 2.8'PACKAGE_TARNAME='mct'PACKAGE_URL=''PACKAGE_VERSION='2.8'PATH_SEPARATOR=':'PROGFCFLAGS=''PYTHON=''PYTHONOPTS=''RANLIB=''REAL8=''SHELL='/bin/sh'ac_ct_CC=''ac_ct_FC=''bindir='${exec_prefix}/bin'build_alias=''datadir='${datarootdir}'datarootdir='${prefix}/share'docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'dvidir='${docdir}'exec_prefix='NONE'host_alias=''htmldir='${docdir}'includedir='${prefix}/include'infodir='${datarootdir}/info'libdir='${exec_prefix}/lib'libexecdir='${exec_prefix}/libexec'localedir='${datarootdir}/locale'localstatedir='${prefix}/var'mandir='${datarootdir}/man'oldincludedir='/usr/include'pdfdir='${docdir}'prefix='NONE'program_transform_name='s,x,x,'psdir='${docdir}'sbindir='${exec_prefix}/sbin'sharedstatedir='${prefix}/com'subdirs=''sysconfdir='${prefix}/etc'target_alias='' ## ----------- #### confdefs.h. #### ----------- ## /* confdefs.h */#define PACKAGE_NAME "MCT"#define PACKAGE_TARNAME "mct"#define PACKAGE_VERSION "2.8"#define PACKAGE_STRING "MCT 2.8"#define PACKAGE_BUGREPORT ""#define PACKAGE_URL "" configure: exit 77


Please help me,I am really confused about the error.
Regards,  
 
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