hi dear all,
I am trying to run CLM5 and found the below error: I guess it was form reading the NC file and thus,
I checked the files and make sure that they are not empty. Can anybody help me with this ? Thanks!
-------------------------------------------------------------------------------------------------------------------------------------
Invalid PIO rearranger comm max pend req (comp2io), 0
Resetting PIO rearranger comm max pend req (comp2io) to 64
PIO rearranger options:
comm type =
p2p
comm fcd =
2denable
max pend req (comp2io) = 0
enable_hs (comp2io) = T
enable_isend (comp2io) = F
max pend req (io2comp) = 64
enable_hs (io2comp) = F
enable_isend (io2comp) = T
(seq_comm_setcomm) init ID ( 1 GLOBAL ) pelist = 0 47 1 ( npes = 48) ( nthreads = 1)( suffix =)
(seq_comm_setcomm) init ID ( 2 CPL ) pelist = 0 47 1 ( npes = 48) ( nthreads = 1)( suffix =)
(seq_comm_setcomm) init ID ( 5 ATM ) pelist = 0 47 1 ( npes = 48) ( nthreads = 1)( suffix =)
(seq_comm_joincomm) init ID ( 6 CPLATM ) join IDs = 2 5 ( npes = 48) ( nthreads = 1)
(seq_comm_jcommarr) init ID ( 3 ALLATMID ) join multiple comp IDs ( npes = 48) ( nthreads = 1)
(seq_comm_joincomm) init ID ( 4 CPLALLATMID ) join IDs = 2 3 ( npes = 48) ( nthreads = 1)
(seq_comm_setcomm) init ID ( 9 LND ) pelist = 0 47 1 ( npes = 48) ( nthreads = 1)( suffix =)
(seq_comm_joincomm) init ID ( 10 CPLLND ) join IDs = 2 9 ( npes = 48) ( nthreads = 1)
(seq_comm_jcommarr) init ID ( 7 ALLLNDID ) join multiple comp IDs ( npes = 48) ( nthreads = 1)
(seq_comm_joincomm) init ID ( 8 CPLALLLNDID ) join IDs = 2 7 ( npes = 48) ( nthreads = 1)
(seq_comm_setcomm) init ID ( 13 ICE ) pelist = 0 47 1 ( npes = 48) ( nthreads = 1)( suffix =)
(seq_comm_joincomm) init ID ( 14 CPLICE ) join IDs = 2 13 ( npes = 48) ( nthreads = 1)
(seq_comm_jcommarr) init ID ( 11 ALLICEID ) join multiple comp IDs ( npes = 48) ( nthreads = 1)
(seq_comm_joincomm) init ID ( 12 CPLALLICEID ) join IDs = 2 11 ( npes = 48) ( nthreads = 1)
(seq_comm_setcomm) init ID ( 17 OCN ) pelist = 0 47 1 ( npes = 48) ( nthreads = 1)( suffix =)
(seq_comm_joincomm) init ID ( 18 CPLOCN ) join IDs = 2 17 ( npes = 48) ( nthreads = 1)
(seq_comm_jcommarr) init ID ( 15 ALLOCNID ) join multiple comp IDs ( npes = 48) ( nthreads = 1)
(seq_comm_joincomm) init ID ( 16 CPLALLOCNID ) join IDs = 2 15 ( npes = 48) ( nthreads = 1)
(seq_comm_setcomm) init ID ( 21 ROF ) pelist = 0 47 1 ( npes = 48) ( nthreads = 1)( suffix =)
(seq_comm_joincomm) init ID ( 22 CPLROF ) join IDs = 2 21 ( npes = 48) ( nthreads = 1)
(seq_comm_jcommarr) init ID ( 19 ALLROFID ) join multiple comp IDs ( npes = 48) ( nthreads = 1)
(seq_comm_joincomm) init ID ( 20 CPLALLROFID ) join IDs = 2 19 ( npes = 48) ( nthreads = 1)
(seq_comm_setcomm) init ID ( 25 GLC ) pelist = 0 47 1 ( npes = 48) ( nthreads = 1)( suffix =)
(seq_comm_joincomm) init ID ( 26 CPLGLC ) join IDs = 2 25 ( npes = 48) ( nthreads = 1)
(seq_comm_jcommarr) init ID ( 23 ALLGLCID ) join multiple comp IDs ( npes = 48) ( nthreads = 1)
(seq_comm_joincomm) init ID ( 24 CPLALLGLCID ) join IDs = 2 23 ( npes = 48) ( nthreads = 1)
(seq_comm_setcomm) init ID ( 29 WAV ) pelist = 0 47 1 ( npes = 48) ( nthreads = 1)( suffix =)
(seq_comm_joincomm) init ID ( 30 CPLWAV ) join IDs = 2 29 ( npes = 48) ( nthreads = 1)
(seq_comm_jcommarr) init ID ( 27 ALLWAVID ) join multiple comp IDs ( npes = 48) ( nthreads = 1)
(seq_comm_joincomm) init ID ( 28 CPLALLWAVID ) join IDs = 2 27 ( npes = 48) ( nthreads = 1)
(seq_comm_setcomm) init ID ( 33 ESP ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =)
(seq_comm_joincomm) init ID ( 34 CPLESP ) join IDs = 2 33 ( npes = 48) ( nthreads = 1)
(seq_comm_jcommarr) init ID ( 31 ALLESPID ) join multiple comp IDs ( npes = 1) ( nthreads = 1)
(seq_comm_joincomm) init ID ( 32 CPLALLESPID ) join IDs = 2 31 ( npes = 48) ( nthreads = 1)
(seq_comm_printcomms) 1 0 48 1 GLOBAL:
(seq_comm_printcomms) 2 0 48 1 CPL:
(seq_comm_printcomms) 3 0 48 1 ALLATMID:
(seq_comm_printcomms) 4 0 48 1 CPLALLATMID:
(seq_comm_printcomms) 5 0 48 1 ATM:
(seq_comm_printcomms) 6 0 48 1 CPLATM:
(seq_comm_printcomms) 7 0 48 1 ALLLNDID:
(seq_comm_printcomms) 8 0 48 1 CPLALLLNDID:
(seq_comm_printcomms) 9 0 48 1 LND:
(seq_comm_printcomms) 10 0 48 1 CPLLND:
(seq_comm_printcomms) 11 0 48 1 ALLICEID:
(seq_comm_printcomms) 12 0 48 1 CPLALLICEID:
(seq_comm_printcomms) 13 0 48 1 ICE:
(seq_comm_printcomms) 14 0 48 1 CPLICE:
(seq_comm_printcomms) 15 0 48 1 ALLOCNID:
(seq_comm_printcomms) 16 0 48 1 CPLALLOCNID:
(seq_comm_printcomms) 17 0 48 1 OCN:
(seq_comm_printcomms) 18 0 48 1 CPLOCN:
(seq_comm_printcomms) 19 0 48 1 ALLROFID:
(seq_comm_printcomms) 20 0 48 1 CPLALLROFID:
(seq_comm_printcomms) 21 0 48 1 ROF:
(seq_comm_printcomms) 22 0 48 1 CPLROF:
(seq_comm_printcomms) 23 0 48 1 ALLGLCID:
(seq_comm_printcomms) 24 0 48 1 CPLALLGLCID:
(seq_comm_printcomms) 25 0 48 1 GLC:
(seq_comm_printcomms) 26 0 48 1 CPLGLC:
(seq_comm_printcomms) 27 0 48 1 ALLWAVID:
(seq_comm_printcomms) 28 0 48 1 CPLALLWAVID:
(seq_comm_printcomms) 29 0 48 1 WAV:
(seq_comm_printcomms) 30 0 48 1 CPLWAV:
(seq_comm_printcomms) 31 0 1 1 ALLESPID:
(seq_comm_printcomms) 32 0 48 1 CPLALLESPID:
(seq_comm_printcomms) 33 0 1 1 ESP:
(seq_comm_printcomms) 34 0 48 1 CPLESP:
(t_initf) Read in prof_inparm namelist from: drv_in
(t_initf) Using profile_disable= F
(t_initf) profile_timer= 4
(t_initf) profile_depth_limit= 4
(t_initf) profile_detail_limit= 2
(t_initf) profile_barrier= F
(t_initf) profile_outpe_num= 1
(t_initf) profile_outpe_stride= 0
(t_initf) profile_single_file= F
(t_initf) profile_global_stats= T
(t_initf) profile_ovhd_measurement= F
(t_initf) profile_add_detail= F
(t_initf) profile_papi_enable= F
ERROR:
(shr_stream_getCalendar) ERROR: nf90_open file /media/dell/data/cesm/inputdata
/lmwg/atm_forcing.datm7.GSWP3.0.5d.v1.c170516/Precip/clmforc.GSWP3.c2011.0.5x0.
5.Prec.2010-01.nc
Image PC Routine Line Source
cesm.exe 00000000010F0A5D shr_abort_mod_mp_ 114 shr_abort_mod.F90
cesm.exe 0000000001241069 shr_stream_mod_mp 2021 shr_stream_mod.F90
cesm.exe 00000000012527AB shr_stream_mod_mp 648 shr_stream_mod.F90
cesm.exe 0000000001234174 shr_strdata_mod_m 1303 shr_strdata_mod.F90
cesm.exe 00000000004FEE2B datm_shr_mod_mp_d 154 datm_shr_mod.F90
cesm.exe 00000000004F35CE atm_comp_mct_mp_a 141 atm_comp_mct.F90
cesm.exe 0000000000439AF3 component_mod_mp_ 267 component_mod.F90
cesm.exe 00000000004287BB cime_comp_mod_mp_ 1175 cime_comp_mod.F90
cesm.exe 0000000000436B8C MAIN__ 92 cime_driver.F90
cesm.exe 000000000041945D Unknown Unknown Unknown
libc-2.31.so 00001519528CF083 __libc_start_main Unknown Unknown
cesm.exe 000000000041937E Unknown Unknown Unknown
Abort(1001) on node 0 (rank 0 in comm 0): application called MPI_Abort(MPI_COMM_WORLD, 1001) - process 0
I am trying to run CLM5 and found the below error: I guess it was form reading the NC file and thus,
I checked the files and make sure that they are not empty. Can anybody help me with this ? Thanks!
-------------------------------------------------------------------------------------------------------------------------------------
Invalid PIO rearranger comm max pend req (comp2io), 0
Resetting PIO rearranger comm max pend req (comp2io) to 64
PIO rearranger options:
comm type =
p2p
comm fcd =
2denable
max pend req (comp2io) = 0
enable_hs (comp2io) = T
enable_isend (comp2io) = F
max pend req (io2comp) = 64
enable_hs (io2comp) = F
enable_isend (io2comp) = T
(seq_comm_setcomm) init ID ( 1 GLOBAL ) pelist = 0 47 1 ( npes = 48) ( nthreads = 1)( suffix =)
(seq_comm_setcomm) init ID ( 2 CPL ) pelist = 0 47 1 ( npes = 48) ( nthreads = 1)( suffix =)
(seq_comm_setcomm) init ID ( 5 ATM ) pelist = 0 47 1 ( npes = 48) ( nthreads = 1)( suffix =)
(seq_comm_joincomm) init ID ( 6 CPLATM ) join IDs = 2 5 ( npes = 48) ( nthreads = 1)
(seq_comm_jcommarr) init ID ( 3 ALLATMID ) join multiple comp IDs ( npes = 48) ( nthreads = 1)
(seq_comm_joincomm) init ID ( 4 CPLALLATMID ) join IDs = 2 3 ( npes = 48) ( nthreads = 1)
(seq_comm_setcomm) init ID ( 9 LND ) pelist = 0 47 1 ( npes = 48) ( nthreads = 1)( suffix =)
(seq_comm_joincomm) init ID ( 10 CPLLND ) join IDs = 2 9 ( npes = 48) ( nthreads = 1)
(seq_comm_jcommarr) init ID ( 7 ALLLNDID ) join multiple comp IDs ( npes = 48) ( nthreads = 1)
(seq_comm_joincomm) init ID ( 8 CPLALLLNDID ) join IDs = 2 7 ( npes = 48) ( nthreads = 1)
(seq_comm_setcomm) init ID ( 13 ICE ) pelist = 0 47 1 ( npes = 48) ( nthreads = 1)( suffix =)
(seq_comm_joincomm) init ID ( 14 CPLICE ) join IDs = 2 13 ( npes = 48) ( nthreads = 1)
(seq_comm_jcommarr) init ID ( 11 ALLICEID ) join multiple comp IDs ( npes = 48) ( nthreads = 1)
(seq_comm_joincomm) init ID ( 12 CPLALLICEID ) join IDs = 2 11 ( npes = 48) ( nthreads = 1)
(seq_comm_setcomm) init ID ( 17 OCN ) pelist = 0 47 1 ( npes = 48) ( nthreads = 1)( suffix =)
(seq_comm_joincomm) init ID ( 18 CPLOCN ) join IDs = 2 17 ( npes = 48) ( nthreads = 1)
(seq_comm_jcommarr) init ID ( 15 ALLOCNID ) join multiple comp IDs ( npes = 48) ( nthreads = 1)
(seq_comm_joincomm) init ID ( 16 CPLALLOCNID ) join IDs = 2 15 ( npes = 48) ( nthreads = 1)
(seq_comm_setcomm) init ID ( 21 ROF ) pelist = 0 47 1 ( npes = 48) ( nthreads = 1)( suffix =)
(seq_comm_joincomm) init ID ( 22 CPLROF ) join IDs = 2 21 ( npes = 48) ( nthreads = 1)
(seq_comm_jcommarr) init ID ( 19 ALLROFID ) join multiple comp IDs ( npes = 48) ( nthreads = 1)
(seq_comm_joincomm) init ID ( 20 CPLALLROFID ) join IDs = 2 19 ( npes = 48) ( nthreads = 1)
(seq_comm_setcomm) init ID ( 25 GLC ) pelist = 0 47 1 ( npes = 48) ( nthreads = 1)( suffix =)
(seq_comm_joincomm) init ID ( 26 CPLGLC ) join IDs = 2 25 ( npes = 48) ( nthreads = 1)
(seq_comm_jcommarr) init ID ( 23 ALLGLCID ) join multiple comp IDs ( npes = 48) ( nthreads = 1)
(seq_comm_joincomm) init ID ( 24 CPLALLGLCID ) join IDs = 2 23 ( npes = 48) ( nthreads = 1)
(seq_comm_setcomm) init ID ( 29 WAV ) pelist = 0 47 1 ( npes = 48) ( nthreads = 1)( suffix =)
(seq_comm_joincomm) init ID ( 30 CPLWAV ) join IDs = 2 29 ( npes = 48) ( nthreads = 1)
(seq_comm_jcommarr) init ID ( 27 ALLWAVID ) join multiple comp IDs ( npes = 48) ( nthreads = 1)
(seq_comm_joincomm) init ID ( 28 CPLALLWAVID ) join IDs = 2 27 ( npes = 48) ( nthreads = 1)
(seq_comm_setcomm) init ID ( 33 ESP ) pelist = 0 0 1 ( npes = 1) ( nthreads = 1)( suffix =)
(seq_comm_joincomm) init ID ( 34 CPLESP ) join IDs = 2 33 ( npes = 48) ( nthreads = 1)
(seq_comm_jcommarr) init ID ( 31 ALLESPID ) join multiple comp IDs ( npes = 1) ( nthreads = 1)
(seq_comm_joincomm) init ID ( 32 CPLALLESPID ) join IDs = 2 31 ( npes = 48) ( nthreads = 1)
(seq_comm_printcomms) 1 0 48 1 GLOBAL:
(seq_comm_printcomms) 2 0 48 1 CPL:
(seq_comm_printcomms) 3 0 48 1 ALLATMID:
(seq_comm_printcomms) 4 0 48 1 CPLALLATMID:
(seq_comm_printcomms) 5 0 48 1 ATM:
(seq_comm_printcomms) 6 0 48 1 CPLATM:
(seq_comm_printcomms) 7 0 48 1 ALLLNDID:
(seq_comm_printcomms) 8 0 48 1 CPLALLLNDID:
(seq_comm_printcomms) 9 0 48 1 LND:
(seq_comm_printcomms) 10 0 48 1 CPLLND:
(seq_comm_printcomms) 11 0 48 1 ALLICEID:
(seq_comm_printcomms) 12 0 48 1 CPLALLICEID:
(seq_comm_printcomms) 13 0 48 1 ICE:
(seq_comm_printcomms) 14 0 48 1 CPLICE:
(seq_comm_printcomms) 15 0 48 1 ALLOCNID:
(seq_comm_printcomms) 16 0 48 1 CPLALLOCNID:
(seq_comm_printcomms) 17 0 48 1 OCN:
(seq_comm_printcomms) 18 0 48 1 CPLOCN:
(seq_comm_printcomms) 19 0 48 1 ALLROFID:
(seq_comm_printcomms) 20 0 48 1 CPLALLROFID:
(seq_comm_printcomms) 21 0 48 1 ROF:
(seq_comm_printcomms) 22 0 48 1 CPLROF:
(seq_comm_printcomms) 23 0 48 1 ALLGLCID:
(seq_comm_printcomms) 24 0 48 1 CPLALLGLCID:
(seq_comm_printcomms) 25 0 48 1 GLC:
(seq_comm_printcomms) 26 0 48 1 CPLGLC:
(seq_comm_printcomms) 27 0 48 1 ALLWAVID:
(seq_comm_printcomms) 28 0 48 1 CPLALLWAVID:
(seq_comm_printcomms) 29 0 48 1 WAV:
(seq_comm_printcomms) 30 0 48 1 CPLWAV:
(seq_comm_printcomms) 31 0 1 1 ALLESPID:
(seq_comm_printcomms) 32 0 48 1 CPLALLESPID:
(seq_comm_printcomms) 33 0 1 1 ESP:
(seq_comm_printcomms) 34 0 48 1 CPLESP:
(t_initf) Read in prof_inparm namelist from: drv_in
(t_initf) Using profile_disable= F
(t_initf) profile_timer= 4
(t_initf) profile_depth_limit= 4
(t_initf) profile_detail_limit= 2
(t_initf) profile_barrier= F
(t_initf) profile_outpe_num= 1
(t_initf) profile_outpe_stride= 0
(t_initf) profile_single_file= F
(t_initf) profile_global_stats= T
(t_initf) profile_ovhd_measurement= F
(t_initf) profile_add_detail= F
(t_initf) profile_papi_enable= F
ERROR:
(shr_stream_getCalendar) ERROR: nf90_open file /media/dell/data/cesm/inputdata
/lmwg/atm_forcing.datm7.GSWP3.0.5d.v1.c170516/Precip/clmforc.GSWP3.c2011.0.5x0.
5.Prec.2010-01.nc
Image PC Routine Line Source
cesm.exe 00000000010F0A5D shr_abort_mod_mp_ 114 shr_abort_mod.F90
cesm.exe 0000000001241069 shr_stream_mod_mp 2021 shr_stream_mod.F90
cesm.exe 00000000012527AB shr_stream_mod_mp 648 shr_stream_mod.F90
cesm.exe 0000000001234174 shr_strdata_mod_m 1303 shr_strdata_mod.F90
cesm.exe 00000000004FEE2B datm_shr_mod_mp_d 154 datm_shr_mod.F90
cesm.exe 00000000004F35CE atm_comp_mct_mp_a 141 atm_comp_mct.F90
cesm.exe 0000000000439AF3 component_mod_mp_ 267 component_mod.F90
cesm.exe 00000000004287BB cime_comp_mod_mp_ 1175 cime_comp_mod.F90
cesm.exe 0000000000436B8C MAIN__ 92 cime_driver.F90
cesm.exe 000000000041945D Unknown Unknown Unknown
libc-2.31.so 00001519528CF083 __libc_start_main Unknown Unknown
cesm.exe 000000000041937E Unknown Unknown Unknown
Abort(1001) on node 0 (rank 0 in comm 0): application called MPI_Abort(MPI_COMM_WORLD, 1001) - process 0