errors occur when the cesm2.1.3 start running

[chenyh1991@126_com]

Dear sir
When i submit the cesm.exe to run the cesm2.1.3with the command
yhbatch -N 4 -n 128 -p TH_HPC3N submit.sh
i meet the pio problems.
Invalid PIO rearranger comm max pend req (comp2io), 0
Resetting PIO rearranger comm max pend req (comp2io) to 64
PIO rearranger options:
comm type =
p2p

comm fcd =
2denable

max pend req (comp2io) = 0
enable_hs (comp2io) = T
enable_isend (comp2io) = F
max pend req (io2comp) = 64
enable_hs (io2comp) = F
enable_isend (io2comp) = T
(seq_comm_setcomm) init ID ( 1 GLOBAL ) pelist = 0 127 1 ( npes = 128) ( nthreads = 1)( suffix =)
(seq_comm_setcomm) init ID ( 2 CPL ) pelist = 0 63 1 ( npes = 64) ( nthreads = 1)( suffix =)
(seq_comm_setcomm) init ID ( 5 ATM ) pelist = 0 127 1 ( npes = 128) ( nthreads = 1)( suffix =)
(seq_comm_joincomm) init ID ( 6 CPLATM ) join IDs = 2 5 ( npes = 128) ( nthreads = 1)
(seq_comm_jcommarr) init ID ( 3 ALLATMID ) join multiple comp IDs ( npes = 128) ( nthreads = 1)
(seq_comm_joincomm) init ID ( 4 CPLALLATMID ) join IDs = 2 3 ( npes = 128) ( nthreads = 1)
(seq_comm_setcomm) init ID ( 9 LND ) pelist = 0 63 1 ( npes = 64) ( nthreads = 1)( suffix =)
(seq_comm_joincomm) init ID ( 10 CPLLND ) join IDs = 2 9 ( npes = 64) ( nthreads = 1)
(seq_comm_jcommarr) init ID ( 7 ALLLNDID ) join multiple comp IDs ( npes = 64) ( nthreads = 1)
(seq_comm_joincomm) init ID ( 8 CPLALLLNDID ) join IDs = 2 7 ( npes = 64) ( nthreads = 1)
(seq_comm_setcomm) init ID ( 13 ICE ) pelist = 0 63 1 ( npes = 64) ( nthreads = 1)( suffix =)
(seq_comm_joincomm) init ID ( 14 CPLICE ) join IDs = 2 13 ( npes = 64) ( nthreads = 1)
(seq_comm_jcommarr) init ID ( 11 ALLICEID ) join multiple comp IDs ( npes = 64) ( nthreads = 1)
(seq_comm_joincomm) init ID ( 12 CPLALLICEID ) join IDs = 2 11 ( npes = 64) ( nthreads = 1)
(seq_comm_setcomm) init ID ( 17 OCN ) pelist = 0 63 1 ( npes = 64) ( nthreads = 1)( suffix =)
(seq_comm_joincomm) init ID ( 18 CPLOCN ) join IDs = 2 17 ( npes = 64) ( nthreads = 1)
(seq_comm_jcommarr) init ID ( 15 ALLOCNID ) join multiple comp IDs ( npes = 64) ( nthreads = 1)
(seq_comm_joincomm) init ID ( 16 CPLALLOCNID ) join IDs = 2 15 ( npes = 64) ( nthreads = 1)
........................
I only submit the job with no batch system, directly submiting with the cesm.exe. I have checked out the previous posts to find answers to this questions.
I don't quite understand how to solve this problem, I need some help, thanks for your attention and help.

 

[chenyh1991@126_com]

Some documents involving issues

 

[fischer]

You need to use the case.submit script to run your jobs. It sets several environment variables that are needed to run.
To run locally you do case.submit --no-batch.

Chris

 

[chenyh1991@126_com]

Dear sir
I think the two statements are the errors points. One is GPTLstopf thread 0: timer for "a:PIO:pre_pio_write_nf" had not been started, the other is
newchild: child "a:PIO:pio_write_darray" can't be a parent of itself.
I don't search the relevant content in the forum. Could i have your help？
Thanks a lot.
Yuhang

 

[fischer]

I'm not sure what's happening. Can you provide information that's requested in

Information to include in help requests

When you are posting to the forums because you want help with an issue, please include as much of the following information as possible. Before submitting a help request, please check to see if your question is already answered: Search the forums for similar issues Check the CIME...

bb.cgd.ucar.edu

Thanks
Chris

 

[jeffhu]

Dear sir
I think the two statements are the errors points. One is GPTLstopf thread 0: timer for "a:PIO:pre_pio_write_nf" had not been started, the other is
newchild: child "a:PIO:pio_write_darray" can't be a parent of itself.
I don't search the relevant content in the forum. Could i have your help？
Thanks a lot.
Yuhang

Hi Yuhang, have you solved that? I have similar errors.

 

[Sreerag]

Do you find any resolution for this problem, I am also facing the same. If anyone know please command on it

Dear sir
I think the two statements are the errors points. One is GPTLstopf thread 0: timer for "a:PIO:pre_pio_write_nf" had not been started, the other is
newchild: child "a:PIO:pio_write_darray" can't be a parent of itself.
I don't search the relevant content in the forum. Could i have your help？
Thanks a lot.
Yuhang

Thanks in advance
Sreerag

 

[katec]

Hi Sreerag,
I don't know specifically what this error means, but it could be related to how the PIO library is linked or loaded by the machine. The first poster was not using case.submit, which sets up many libraries and environment configurations. If you are not using case.submit to submit your job, then you should do that. If you are using case.submit and still getting this error than please send more information about your machine and experiment set up as in this: Information to include in help requests