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for_diags_intel.c:(.text+0x1552): additional relocation overflows omitted from the output make: *** [cesm.exe] Error 1

L

Lumoss

Member
Greetings!

Error after./case.build:

ERROR: BUILD FAIL: buildexe failed, cat /home/src_cesm2_3_beta08/projects/scratch/mycase_test1/bld/cesm.bldlog.231008-192605

and cesm.bldlog.231008-192605:

Bash: 
/home/src_cesm2_3_beta08/cime/scripts/mycase/mycase_test1/Tools/Makefile:8: "Variable MODEL is deprecated, please use COMP_NAME instead"
/home/src_cesm2_3_beta08/components/cmeps/cime_config/../mediator/med_io_mod.F90(126): warning #6843: A dummy argument with an explicit INTENT(OUT) declaration is not given an explicit value.   [RC]
  subroutine med_io_init(gcomp, rc)
--------------------------------^
/opt/intel/oneapi/compiler/2021.1.1/linux/compiler/lib/intel64_lin/libifcoremt.a(for_diags_intel.o): In function `for__io_return':
for_diags_intel.c:(.text+0xce5): relocation truncated to fit: R_X86_64_PC32 against symbol `message_catalog' defined in COMMON section in /opt/intel/oneapi/compiler/2021.1.1/linux/compiler/lib/intel64_lin/libifcoremt.a(for_diags_intel.o)
for_diags_intel.c:(.text+0xe86): relocation truncated to fit: R_X86_64_PC32 against symbol `message_catalog' defined in COMMON section in /opt/intel/oneapi/compiler/2021.1.1/linux/compiler/lib/intel64_lin/libifcoremt.a(for_diags_intel.o)
for_diags_intel.c:(.text+0x1055): relocation truncated to fit: R_X86_64_PC32 against symbol `message_catalog' defined in COMMON section in /opt/intel/oneapi/compiler/2021.1.1/linux/compiler/lib/intel64_lin/libifcoremt.a(for_diags_intel.o)
for_diags_intel.c:(.text+0x1064): relocation truncated to fit: R_X86_64_PC32 against symbol `message_catalog' defined in COMMON section in /opt/intel/oneapi/compiler/2021.1.1/linux/compiler/lib/intel64_lin/libifcoremt.a(for_diags_intel.o)
for_diags_intel.c:(.text+0x11d0): relocation truncated to fit: R_X86_64_PC32 against symbol `message_catalog' defined in COMMON section in /opt/intel/oneapi/compiler/2021.1.1/linux/compiler/lib/intel64_lin/libifcoremt.a(for_diags_intel.o)
for_diags_intel.c:(.text+0x11df): relocation truncated to fit: R_X86_64_PC32 against symbol `message_catalog' defined in COMMON section in /opt/intel/oneapi/compiler/2021.1.1/linux/compiler/lib/intel64_lin/libifcoremt.a(for_diags_intel.o)
for_diags_intel.c:(.text+0x1246): relocation truncated to fit: R_X86_64_PC32 against symbol `message_catalog' defined in COMMON section in /opt/intel/oneapi/compiler/2021.1.1/linux/compiler/lib/intel64_lin/libifcoremt.a(for_diags_intel.o)
for_diags_intel.c:(.text+0x12b9): relocation truncated to fit: R_X86_64_PC32 against symbol `message_catalog' defined in COMMON section in /opt/intel/oneapi/compiler/2021.1.1/linux/compiler/lib/intel64_lin/libifcoremt.a(for_diags_intel.o)
for_diags_intel.c:(.text+0x139e): relocation truncated to fit: R_X86_64_PC32 against symbol `message_catalog' defined in COMMON section in /opt/intel/oneapi/compiler/2021.1.1/linux/compiler/lib/intel64_lin/libifcoremt.a(for_diags_intel.o)
for_diags_intel.c:(.text+0x1543): relocation truncated to fit: R_X86_64_PC32 against symbol `message_catalog' defined in COMMON section in /opt/intel/oneapi/compiler/2021.1.1/linux/compiler/lib/intel64_lin/libifcoremt.a(for_diags_intel.o)
for_diags_intel.c:(.text+0x1552): additional relocation overflows omitted from the output
make: *** [/home/src_cesm2_3_beta08/projects/scratch/mycase_test1/bld/cesm.exe] Error 1

Does anyone have ideas about what might be going wrong here? Maybe there is some extra ifort flag I need to add somewhere?

Thanks for looking!

-Lumos
 
J

jedwards

CSEG and Liaisons
Staff member
This error often occurs if you attempt to build with NTASKS values that are too small for the domain size. You didn't provide enough information to determine if that is the case here.
 
L

Lumoss

Member
jedwards said:
This error often occurs if you attempt to build with NTASKS values that are too small for the domain size. You didn't provide enough information to determine if that is the case here.
Click to expand...

Thank you for your reply.

For the time being, I am trying to port CESM2_3_beta08 in a virtual machine, building the case MUSICAv0 (CAM-chem with CONUS grid).

My config_compilers.xml:

XML: 
<?xml version="1.0"?>
<config_compilers version="2.0">
   <!-- customize these fields as appropriate for your
        system. Examples are prodived for Mac OS X systems with
        homebrew and macports. -->
   <compiler COMPILER="intel" MACH="Lumos">
      <!-- homebrew -->
      <CFLAGS>
        <base>  -qno-opt-dynamic-align -fp-model precise -std=gnu99 </base>
        <append compile_threaded="true"> -qopenmp </append>
        <append DEBUG="FALSE"> -O2 -debug minimal </append>
        <append DEBUG="TRUE"> -O0 -g </append>
      </CFLAGS>
      <!--MPI_LIB_NAME MPILIB="mpich">mpich</MPI_LIB_NAME-->
      <CPPDEFS>
    <append>-DFORTRANUNDERSCORE -DCPRINTEL</append>
      </CPPDEFS>
      <CXX_LDFLAGS>
        <base> -cxxlib </base>
      </CXX_LDFLAGS>
      <CXX_LINKER>FORTRAN</CXX_LINKER>
      <FC_AUTO_R8>
        <base> -r8 </base>
      </FC_AUTO_R8>
      <FFLAGS>
        <base> -qno-opt-dynamic-align  -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source  </base>
        <append compile_threaded="true"> -qopenmp </append>
        <append DEBUG="TRUE"> -O0 -g -check uninit -check bounds -check pointers -fpe0 -check noarg_temp_created </append>
        <append DEBUG="FALSE"> -O2 -debug minimal </append>
        <append MPILIB="impi"> -mcmodel medium </append>
      </FFLAGS>
      <FFLAGS_NOOPT>
        <base> -O0 </base>
        <append compile_threaded="true"> -qopenmp </append>
      </FFLAGS_NOOPT>
      <FIXEDFLAGS>
        <base> -fixed </base>
      </FIXEDFLAGS>
      <FREEFLAGS>
        <base> -free </base>
      </FREEFLAGS>
      <LDFLAGS>
    <append compile_threaded="TRUE"> -qopenmp </append>
        <append> -mkl </append>
      </LDFLAGS>
      <!-- brew install gcc without-multilib cmake mpich hdf5 enable-fortran netcdf enable-fortran -->
      <SFC> ifort </SFC>
      <SCC> icc </SCC>
      <SCXX> icpc </SCXX>
      <MPIFC> mpiifort </MPIFC>
      <MPICC> mpiicc  </MPICC>
      <MPICXX> mpiicpc </MPICXX>
      <SUPPORTS_CXX>TRUE</SUPPORTS_CXX>
      <NETCDF_PATH>/home/LIBRARIESICC/netcdf</NETCDF_PATH>
      <SLIBS>
        <append> -L/home/LIBRARIESICC/netcdf/lib -lnetcdff -lnetcdf</append>
        <append> -L/opt/intel/oneapi/mkl/2021.1.1/lib/intel64 -lmkl_rt</append>
        <!--append> -L/home/pc/LIBRARIESICC/lapack-3.11 -llapack -lblas</append-->
      </SLIBS>


   </compiler>


</config_compilers>

My config_machines.xml:

XML: 
<?xml version="1.0"?>
<config_machines>
   <machine MACH="Lumos">
      <!-- customize these fields as appropriate for your system (max tasks) and
           desired layout (change '${HOME}/projects' to your
           prefered location). -->
      <DESC>__USEFUL_DESCRIPTION__</DESC>
      <OS>LINUX</OS>
      <NODENAME_REGEX> Lumos </NODENAME_REGEX>
      <COMPILERS>intel</COMPILERS>
      <MPILIBS>intelmpi</MPILIBS>
      <CIME_OUTPUT_ROOT>/home/src_cesm2_3_beta08/projects/scratch</CIME_OUTPUT_ROOT>
      <DIN_LOC_ROOT>/mnt/hgfs/cesminputdata</DIN_LOC_ROOT>
      <DIN_LOC_ROOT_CLMFORC>/home/src_cesm2_3_beta08/projects/ptclm-data</DIN_LOC_ROOT_CLMFORC>
      <DOUT_S_ROOT>/home/src_cesm2_3_beta08/projects/scratch/archive/$CASE</DOUT_S_ROOT>
      <BASELINE_ROOT>/home/src_cesm2_3_beta08/projects/baselines</BASELINE_ROOT>
      <CCSM_CPRNC>/home/src_cesm2_3_beta08/cime/tools/cprnc</CCSM_CPRNC>
      <GMAKE>make</GMAKE>
      <GMAKE_J>2</GMAKE_J>
      <BATCH_SYSTEM>none</BATCH_SYSTEM>
      <SUPPORTED_BY>Lumos</SUPPORTED_BY>
      <MAX_TASKS_PER_NODE>1</MAX_TASKS_PER_NODE>
      <MAX_MPITASKS_PER_NODE>1</MAX_MPITASKS_PER_NODE>
      <mpirun mpilib="intelmpi">
    <executable>mpirun</executable>
    <arguments>
          <arg name="ntasks"> -np {{ total_tasks }} </arg>
          <!--
           <arg name="anum_tasks"> -np $TOTALPES</arg>
      <arg name="labelstdout">-prepend-rank</arg>
          -->
    </arguments>
      </mpirun>
      <module_system type="none"/>
      <environment_variables comp_interface="nuopc">
        <env name="OMP_STACKSIZE">256M</env>
        <env name="MKL_PATH">/opt/intel/oneapi/mkl/2021.1.1/lib/intel64</env>
        <env name="ESMFMKFILE">/home/LIBRARIESICC/esmfinstall8_split_imkl/lib/libg/Linux.intel.64.intelmpi.default/esmf.mk</env>
        <env name="NETCDF_PATH">/home/LIBRARIESICC/netcdf</env>
        <env name="NETCDF_HOME">/home/LIBRARIESICC/netcdf</env>
        <env name="HDF5_PATH">/home/LIBRARIESICC/netcdf</env>
        <env name="ZLIB_PATH">/home/LIBRARIESICC/netcdf</env>
      </environment_variables>
      <resource_limits>
        <resource name="RLIMIT_STACK">-1</resource>
      </resource_limits>
   </machine>


  <default_run_suffix>
    <default_run_exe>${EXEROOT}/cesm.exe </default_run_exe>
    <default_run_misc_suffix> >> cesm.log.$LID 2>&amp;1 </default_run_misc_suffix>
  </default_run_suffix>


</config_machines>

Thanks again.

--Lumos
 
L

Lumoss

Member
Greetings!

I used the default total tasks: 135, then./case.build, and the problem was solved.

Thank you very much！

--Lumos
 
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