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After updating for the missing PIO utils per your reply, my PIO build failed for lack of a PIO Makefile, which does appear to be included in the repository (nor is configure). What's the likely cause of my missing PIO Makefile and configure files?$ cat /home/ec2-user/AWS-CESM/cesm1_2_1/test1/pio/pio.bldlog.170126-164457
Thu Jan 26 16:45:24 UTC 2017 /home/ec2-user/AWS-CESM/cesm1_2_1/test1/pio/pio.bldlog.170126-164457
Copying source to CCSM EXEROOT...
cp: cannot stat ‘/home/ec2-user/AWS-CESM/cesm1_2_1/models/utils/pio/Makefile’: No such file or directory
New build of PIO
Running configure...
for OS=LINUX MACH=userdefined
cat: Filepath: No such file or directory
cat: Srcfiles: No such file or directory
/home/ec2-user/AWS-CESM/cesm1_2_1/test1/Tools/mkSrcfiles
cp -f /home/ec2-user/AWS-CESM/cesm1_2_1/test1/pio/Filepath /home/ec2-user/AWS-CESM/cesm1_2_1/test1/pio/Deppath
/home/ec2-user/AWS-CESM/cesm1_2_1/test1/Tools/mkDepends Deppath Srcfiles > /home/ec2-user/AWS-CESM/cesm1_2_1/test1/pio/Depends
cd /home/ec2-user/AWS-CESM/cesm1_2_1/test1/pio;
/home/ec2-user/AWS-CESM/cesm1_2_1/models/utils/pio/configure --enable-timing CC="icc " FC="ifort " MPICC="mpicc " MPIFC="mpif90 " FCFLAGS="-O2 -fp-model source -convert big_endian -assume byterecl -ftz -traceback -free -I. -I/home/ec2-user/AWS-CESM/cesm1_2_1/test1/pio -I/data/RESOURCES/Intel/netcdf4.4/include -I/data/RESOURCES/Intel/lib/include -I/home/ec2-user/AWS-CESM/cesm1_2_1/test1/mct/mct -I/home/ec2-user/AWS-CESM/cesm1_2_1/test1/mct/mpeu -I/home/ec2-user/AWS-CESM/cesm1_2_1/test1/pio -I/home/ec2-user/AWS-CESM/cesm1_2_1/test1/gptl -I/home/ec2-user/AWS-CESM/cesm1_2_1/models/utils/pio -I/home/ec2-user/AWS-CESM/cesm1_2_1/test1/lib/include" CPPDEFS=" -DLINUX -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLINUX -DCPRINTEL -DHAVE_SLASHPROC" CFLAGS="-O2 -fp-model precise -DLINUX -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLINUX -DCPRINTEL -DHAVE_SLASHPROC -I.. -I. -I/home/ec2-user/AWS-CESM/cesm1_2_1/test1/pio -I/data/RESOURCES/Intel/netcdf4.4/include -I/data/RESOURCES/Intel/lib/include -I/home/ec2-user/AWS-CESM/cesm1_2_1/test1/mct/mct -I/home/ec2-user/AWS-CESM/cesm1_2_1/test1/mct/mpeu -I/home/ec2-user/AWS-CESM/cesm1_2_1/test1/pio -I/home/ec2-user/AWS-CESM/cesm1_2_1/test1/gptl -I/home/ec2-user/AWS-CESM/cesm1_2_1/models/utils/pio -I/home/ec2-user/AWS-CESM/cesm1_2_1/test1/lib/include" NETCDF_PATH=/data/RESOURCES/Intel/netcdf4.4 LDFLAGS="" LIBS="-L/data/RESOURCES/Intel/lib -lnetcdff -L/data/RESOURCES/Intel/lib -lnetcdf -lnetcdf" --srcdir /home/ec2-user/AWS-CESM/cesm1_2_1/models/utils/pio
/bin/sh: line 1: /home/ec2-user/AWS-CESM/cesm1_2_1/models/utils/pio/configure: No such file or directory
gmake: *** [/home/ec2-user/AWS-CESM/cesm1_2_1/test1/pio/Makefile.conf] Error 127
cp: cannot stat ‘Makefile.conf’: No such file or directory
gmake: *** No targets specified and no makefile found. Stop.
After updating for the missing PIO utils per your reply, my PIO build failed for lack of a PIO Makefile, which does appear to be included in the repository (nor is configure). What's the likely cause of my missing PIO Makefile and configure files?$ cat /home/ec2-user/AWS-CESM/cesm1_2_1/test1/pio/pio.bldlog.170126-164457
Thu Jan 26 16:45:24 UTC 2017 /home/ec2-user/AWS-CESM/cesm1_2_1/test1/pio/pio.bldlog.170126-164457
Copying source to CCSM EXEROOT...
cp: cannot stat ‘/home/ec2-user/AWS-CESM/cesm1_2_1/models/utils/pio/Makefile’: No such file or directory
New build of PIO
Running configure...
for OS=LINUX MACH=userdefined
cat: Filepath: No such file or directory
cat: Srcfiles: No such file or directory
/home/ec2-user/AWS-CESM/cesm1_2_1/test1/Tools/mkSrcfiles
cp -f /home/ec2-user/AWS-CESM/cesm1_2_1/test1/pio/Filepath /home/ec2-user/AWS-CESM/cesm1_2_1/test1/pio/Deppath
/home/ec2-user/AWS-CESM/cesm1_2_1/test1/Tools/mkDepends Deppath Srcfiles > /home/ec2-user/AWS-CESM/cesm1_2_1/test1/pio/Depends
cd /home/ec2-user/AWS-CESM/cesm1_2_1/test1/pio;
/home/ec2-user/AWS-CESM/cesm1_2_1/models/utils/pio/configure --enable-timing CC="icc " FC="ifort " MPICC="mpicc " MPIFC="mpif90 " FCFLAGS="-O2 -fp-model source -convert big_endian -assume byterecl -ftz -traceback -free -I. -I/home/ec2-user/AWS-CESM/cesm1_2_1/test1/pio -I/data/RESOURCES/Intel/netcdf4.4/include -I/data/RESOURCES/Intel/lib/include -I/home/ec2-user/AWS-CESM/cesm1_2_1/test1/mct/mct -I/home/ec2-user/AWS-CESM/cesm1_2_1/test1/mct/mpeu -I/home/ec2-user/AWS-CESM/cesm1_2_1/test1/pio -I/home/ec2-user/AWS-CESM/cesm1_2_1/test1/gptl -I/home/ec2-user/AWS-CESM/cesm1_2_1/models/utils/pio -I/home/ec2-user/AWS-CESM/cesm1_2_1/test1/lib/include" CPPDEFS=" -DLINUX -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLINUX -DCPRINTEL -DHAVE_SLASHPROC" CFLAGS="-O2 -fp-model precise -DLINUX -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DLINUX -DCPRINTEL -DHAVE_SLASHPROC -I.. -I. -I/home/ec2-user/AWS-CESM/cesm1_2_1/test1/pio -I/data/RESOURCES/Intel/netcdf4.4/include -I/data/RESOURCES/Intel/lib/include -I/home/ec2-user/AWS-CESM/cesm1_2_1/test1/mct/mct -I/home/ec2-user/AWS-CESM/cesm1_2_1/test1/mct/mpeu -I/home/ec2-user/AWS-CESM/cesm1_2_1/test1/pio -I/home/ec2-user/AWS-CESM/cesm1_2_1/test1/gptl -I/home/ec2-user/AWS-CESM/cesm1_2_1/models/utils/pio -I/home/ec2-user/AWS-CESM/cesm1_2_1/test1/lib/include" NETCDF_PATH=/data/RESOURCES/Intel/netcdf4.4 LDFLAGS="" LIBS="-L/data/RESOURCES/Intel/lib -lnetcdff -L/data/RESOURCES/Intel/lib -lnetcdf -lnetcdf" --srcdir /home/ec2-user/AWS-CESM/cesm1_2_1/models/utils/pio
/bin/sh: line 1: /home/ec2-user/AWS-CESM/cesm1_2_1/models/utils/pio/configure: No such file or directory
gmake: *** [/home/ec2-user/AWS-CESM/cesm1_2_1/test1/pio/Makefile.conf] Error 127
cp: cannot stat ‘Makefile.conf’: No such file or directory
gmake: *** No targets specified and no makefile found. Stop.
Makefile should be generated by configure, configure is missing - are you sure that you have a good checkout of the code?ls -l /home/ec2-user/AWS-CESM/cesm1_2_1/models/utils/pio/configure
Makefile should be generated by configure, configure is missing - are you sure that you have a good checkout of the code?ls -l /home/ec2-user/AWS-CESM/cesm1_2_1/models/utils/pio/configure
Makefile should be generated by configure, configure is missing - are you sure that you have a good checkout of the code?ls -l /home/ec2-user/AWS-CESM/cesm1_2_1/models/utils/pio/configure
Makefile should be generated by configure, configure is missing - are you sure that you have a good checkout of the code?ls -l /home/ec2-user/AWS-CESM/cesm1_2_1/models/utils/pio/configure
Makefile should be generated by configure, configure is missing - are you sure that you have a good checkout of the code?ls -l /home/ec2-user/AWS-CESM/cesm1_2_1/models/utils/pio/configure
Makefile should be generated by configure, configure is missing - are you sure that you have a good checkout of the code?ls -l /home/ec2-user/AWS-CESM/cesm1_2_1/models/utils/pio/configure
Makefile should be generated by configure, configure is missing - are you sure that you have a good checkout of the code?ls -l /home/ec2-user/AWS-CESM/cesm1_2_1/models/utils/pio/configure
...Also independently checked out the pio library from github (https://github.com/NCAR/ParallelIO.git/tags/pio1_8_12/pio). The configure file is not in that repository--GM
...Also independently checked out the pio library from github (https://github.com/NCAR/ParallelIO.git/tags/pio1_8_12/pio). The configure file is not in that repository--GM
...Also independently checked out the pio library from github (https://github.com/NCAR/ParallelIO.git/tags/pio1_8_12/pio). The configure file is not in that repository--GM
...Also independently checked out the pio library from github (https://github.com/NCAR/ParallelIO.git/tags/pio1_8_12/pio). The configure file is not in that repository--GM
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