In almost every instance I've seen, the planetary albedo is just calculated as FSUT / SOLIN, the shortwave that leaves the top of the model divided by the insolation. In this case, the surface albedo and atmospheric scattering are both included. I think this is comparable to observed estimates of albedo (e.g., Measuring Earth’s Albedo). Similarly, I think the surface albedo is usually calculated just as FSUS / FSDS, the upward shortwave at the surface divided by the downward shortwave at the surface.
Your specific interest in the Bond albedo makes me wonder if you are trying to do something that is different.
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