I have follow
https://www.cgd.ucar.edu/events/2019/ctsm/files/practical4-wieder.pdf to set up the 1-pt run. Here are my change in the namelist:
./xmlchange GET_REFCASE=FALSE
./xmlchange RUN_TYPE=startup
# for 1pt
./xmlchange CLM_FORCE_COLDSTART=on
./xmlchange COST_PES=36
./xmlchange TOTALPES=1
./xmlchange NTASKS=1
./xmlchange NTASKS_PER_INST=1
./xmlchange ROOTPE=0
./xmlchange JOB_QUEUE=share
./xmlchange MPILIB=mpi-serial
./xmlchange JOB_WALLCLOCK_TIME=1:00:00
./xmlchange ATM_DOMAIN_FILE="domain.lnd.fv0.9x1.25_gx1v7_145_64.55.151020.nc"
./xmlchange ATM_DOMAIN_PATH="/glade/work/ayhwong/single_point"
./xmlchange LND_DOMAIN_FILE="domain.lnd.fv0.9x1.25_gx1v7_145_64.55.151020.nc"
./xmlchange LND_DOMAIN_PATH="/glade/work/ayhwong/single_point"
./xmlchange DATM_CLMNCEP_YR_START=1990
./xmlchange DATM_CLMNCEP_YR_END=2014
./xmlchange CALENDAR='NO_LEAP'
./xmlchange RUN_STARTDATE=0001-01-01
./xmlchange START_TOD=00000
./xmlchange RUN_REFDATE=0001-01-01
./xmlchange RUN_REFTOD=00000
./xmlchange EXEROOT=${exeroot}
./xmlchange STOP_OPTION=nyear
./xmlchange STOP_N=10
./xmlchange --append CLM_BLDNML_OPTS=" -drydep"
./xmlchange DEBUG="TRUE"
echo "hist_mfilt = 20" >> user_nl_clm
echo "hist_nhtfrq = -8760" >> user_nl_clm
echo "hist_empty_htapes = .true." >> user_nl_clm
echo "hist_fincl1 = 'TOTECOSYSC', 'TOTECOSYSN', 'TOTSOMC', 'TOTSOMN', 'TOTVEGC', 'TOTVEGN', 'TLAI', 'GPP', 'CPOOL', 'NPP', 'TWS','H2OSNO'" >> user_nl_clm
echo " fsurdat = '/glade/work/ayhwong/single_point/surfdata_0.9x1.25_78pfts_CMIP6_simyr2000_145_64.55_c200616.nc' " >> user_nl_clm
echo " use_soil_emis = .true. " >>$fname
echo "mapalgo = 'nn','nn','nn','nn','nn'" >> user_nl_datm
But the following error happened during runtime:
I have attached the log files for the run. Does anyone know what may have happened? Thanks a lot!