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Netcdf setup issue - CESM2.2.0

X

xliu

Jon
Member
Hi everyone, newbie here. Can anyone help check meaning of the error? I try to run it local with Ubuntu machine, not sure the Netcdf is installed correctly.
It shows 4.6.0 version even I installed with 4.7.4.
Thanks~!

make[2]: Leaving directory '/home/jliu/My_Projects/CESM_ucar_/CESM2.2.0/projects/scratch/test1/bld/gnu/mpich/nodebug/nothreads/mct/pio/pio1'
[100%] Built target pio
make[1]: Leaving directory '/home/jliu/My_Projects/CESM_ucar_/CESM2.2.0/projects/scratch/test1/bld/gnu/mpich/nodebug/nothreads/mct/pio/pio1'
/usr/bin/cmake -E cmake_progress_start /home/jliu/My_Projects/CESM_ucar_/CESM2.2.0/projects/scratch/test1/bld/gnu/mpich/nodebug/nothreads/mct/pio/pio1/CMakeFiles 0
f951: Warning: Nonexistent include directory ‘/home/jliu/My_Projects/CESM_ucar_/CESM2.2.0/projects/scratch/test1/bld/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include’ [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory ‘/home/jliu/My_Projects/CESM_ucar_/CESM2.2.0/projects/scratch/test1/bld/gnu/mpich/nodebug/nothreads/mct/finclude’ [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory ‘/home/jliu/My_Projects/CESM_ucar_/CESM2.2.0/projects/scratch/test1/bld/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include’ [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory ‘/home/jliu/My_Projects/CESM_ucar_/CESM2.2.0/projects/scratch/test1/bld/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include’ [-Wmissing-include-dirs]
.......
f951: Warning: Nonexistent include directory ‘/home/jliu/My_Projects/CESM_ucar_/CESM2.2.0/projects/scratch/test1/bld/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include’ [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory ‘/home/jliu/My_Projects/CESM_ucar_/CESM2.2.0/projects/scratch/test1/bld/gnu/mpich/nodebug/nothreads/mct/finclude’ [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory ‘/home/jliu/My_Projects/CESM_ucar_/CESM2.2.0/projects/scratch/test1/bld/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include’ [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory ‘/home/jliu/My_Projects/CESM_ucar_/CESM2.2.0/projects/scratch/test1/bld/gnu/mpich/nodebug/nothreads/mct/finclude’ [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory ‘/home/jliu/My_Projects/CESM_ucar_/CESM2.2.0/projects/scratch/test1/bld/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include’ [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory ‘/home/jliu/My_Projects/CESM_ucar_/CESM2.2.0/projects/scratch/test1/bld/gnu/mpich/nodebug/nothreads/mct/finclude’ [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory ‘/home/jliu/My_Projects/CESM_ucar_/CESM2.2.0/projects/scratch/test1/bld/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include’ [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory ‘/home/jliu/My_Projects/CESM_ucar_/CESM2.2.0/projects/scratch/test1/bld/gnu/mpich/nodebug/nothreads/mct/finclude’ [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory ‘/home/jliu/My_Projects/CESM_ucar_/CESM2.2.0/projects/scratch/test1/bld/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include’ [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory ‘/home/jliu/My_Projects/CESM_ucar_/CESM2.2.0/projects/scratch/test1/bld/gnu/mpich/nodebug/nothreads/mct/finclude’ [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory ‘/home/jliu/My_Projects/CESM_ucar_/CESM2.2.0/projects/scratch/test1/bld/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include’ [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory ‘/home/jliu/My_Projects/CESM_ucar_/CESM2.2.0/projects/scratch/test1/bld/gnu/mpich/nodebug/nothreads/mct/finclude’ [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory ‘/home/jliu/My_Projects/CESM_ucar_/CESM2.2.0/projects/scratch/test1/bld/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include’ [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory ‘/home/jliu/My_Projects/CESM_ucar_/CESM2.2.0/projects/scratch/test1/bld/gnu/mpich/nodebug/nothreads/mct/finclude’ [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory ‘/home/jliu/My_Projects/CESM_ucar_/CESM2.2.0/projects/scratch/test1/bld/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include’ [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory ‘/home/jliu/My_Projects/CESM_ucar_/CESM2.2.0/projects/scratch/test1/bld/gnu/mpich/nodebug/nothreads/mct/finclude’ [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory ‘/home/jliu/My_Projects/CESM_ucar_/CESM2.2.0/projects/scratch/test1/bld/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include’ [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory ‘/home/jliu/My_Projects/CESM_ucar_/CESM2.2.0/projects/scratch/test1/bld/gnu/mpich/nodebug/nothreads/mct/finclude’ [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory ‘/home/jliu/My_Projects/CESM_ucar_/CESM2.2.0/projects/scratch/test1/bld/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include’ [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory ‘/home/jliu/My_Projects/CESM_ucar_/CESM2.2.0/projects/scratch/test1/bld/gnu/mpich/nodebug/nothreads/mct/finclude’ [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory ‘/home/jliu/My_Projects/CESM_ucar_/CESM2.2.0/projects/scratch/test1/bld/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include’ [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory ‘/home/jliu/My_Projects/CESM_ucar_/CESM2.2.0/projects/scratch/test1/bld/gnu/mpich/nodebug/nothreads/mct/finclude’ [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory ‘/home/jliu/My_Projects/CESM_ucar_/CESM2.2.0/projects/scratch/test1/bld/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include’ [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory ‘/home/jliu/My_Projects/CESM_ucar_/CESM2.2.0/projects/scratch/test1/bld/gnu/mpich/nodebug/nothreads/mct/finclude’ [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory ‘/home/jliu/My_Projects/CESM_ucar_/CESM2.2.0/projects/scratch/test1/bld/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include’ [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory ‘/home/jliu/My_Projects/CESM_ucar_/CESM2.2.0/projects/scratch/test1/bld/gnu/mpich/nodebug/nothreads/mct/finclude’ [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory ‘/home/jliu/My_Projects/CESM_ucar_/CESM2.2.0/projects/scratch/test1/bld/gnu/mpich/nodebug/nothreads/mct/mct/noesmf/c1a1l1i1o1r1g1w1i1e1/include’ [-Wmissing-include-dirs]
f951: Warning: Nonexistent include directory ‘/home/jliu/My_Projects/CESM_ucar_/CESM2.2.0/projects/scratch/test1/bld/gnu/mpich/nodebug/nothreads/mct/finclude’ [-Wmissing-include-dirs]
Installing pio version 1
ERROR: CIME models require NETCDF in PIO build
 
X

xliu

Jon
Member
need help on this error, thanks.

/home/jliu/My_Projects/CESM_ucar_/CESM2.2.0/projects/scratch/test2/bld/cesm.exe: error while loading shared libraries: libnetcdf.so.18: cannot open shared object file: No such file or directory
--------------------------------------------------------------------------
mpirun detected that one or more processes exited with non-zero status, thus causing
the job to be terminated. The first process to do so was:

Process name: [[50377,1],0]
Exit code: 127
--------------------------------------------------------------------------
 
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