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No machine found...

joshua

Hyunggyu, Song
New Member
<?xml version="1.0"?>
<config_machines version="2.0">
<machine MACH="acmg">
<DESC> os is Linux CentOS 7, 32 pes/node, batch system is PBS </DESC>
<NODENAME_REGEX>.*.-mpi.chungbuk.ac.kr</NODENAME_REGEX>
<OS>Linux</OS>
<PROXY>none</PROXY>
<COMPILERS>compiler/gcc-8.2.0</COMPILERS>
<MPILIBS>mpich</MPILIBS>
<PROJECT>none</PROJECT>
<SAVE_TIMING_DIR></SAVE_TIMING_DIR>
<SAVE_TIMING_DIR_PROJECTS></SAVE_TIMING_DIR_PROJECTS>
<CIME_OUTPUT_ROOT>/scratch/$USER</CIME_OUTPUT_ROOT>
<DIN_LOC_ROOT>/home/joshua/inputdata</DIN_LOC_ROOT>
<DIN_LOC_ROOT_CLMFORC>$ENV{CESMDATAROOT}/lmwg</DIN_LOC_ROOT_CLMFORC>
<DOUT_S_ROOT>$CIME_OUTPUT_ROOT/archive/$CASE</DOUT_S_ROOT>
<BASELINE_ROOT>$ENV{CESMDATAROOT}/cesm_baselines</BASELINE_ROOT>
<CCSM_CPRNC>$ENV{CESMDATAROOT}/tools/cprnc</CCSM_CPRNC>
<GMAKE>make</GMAKE>
<GMAKE_J>32</GMAKE_J>
<BATCH_SYSTEM>pbs</BATCH_SYSTEM>
<SUPPORTED_BY>cseg</SUPPORTED_BY>
<MAX_TASKS_PER_NODE>32</MAX_TASKS_PER_NODE>
<MAX_MPITASKS_PER_NODE>32</MAX_MPITASKS_PER_NODE>
<PROJECT_REQUIRED>FALSE</PROJECT_REQUIRED>
<mpirun mpilib="default">
<executable>mpirun</executable>
<arguments>
<arg name="ntasks"> -np {{ total_tasks }} </arg>
</arguments>
</mpirun>
<module_system type="module">
<init_path lang="sh">/etc/profile.d/modules.sh</init_path>
<init_path lang="csh">/etc/profile.d/modules.csh</init_path>
<init_path lang="perl">/usr/share/Modules/init/perl.pm</init_path>
<init_path lang="python">/usr/share/Modules/init/python.py</init_path>
<cmd_path lang="sh">module</cmd_path>
<cmd_path lang="csh">module</cmd_path>
<cmd_path lang="perl">/usr/bin/modulecmd perl</cmd_path>
<cmd_path lang="python">/usr/bin/modulecmd python</cmd_path>
<modules>
<command name="purge"/>
<command name="load">tool/perl-5.30.1</command>
<command name="load">tool/libxml2-2.9.9</command>
<command name="load">python/Python-2.7.17</command>
</modules>
<modules compiler="gnu">
<command name="load">compiler/gcc-8.2.0</command>
<command name="load">tool/hdf5-1.8.22</command>
<command name="load">tool/pnetcdf-1.12.1</command>
<command name="load">tool/netcdf-4.8.0</command>
<command name="load">tool/pio-2.5.0</command>
<command name="load">mpi/mpich-3.3.2</command>
</modules>
<modules compiler="gnu" mpilib="mpi-serial">
<command name="load">mpi/mpich-3.3.2</command>
</modules>
</module_system>
<environment_variables>
<env name="HDF5_HOME">/home/joshua/Modules/hdf5-1.12.0</env>
<env name="MPI_PATH">/home/joshua/Modules/mpich-3.3.2</env>
<env name="NETCDF_PATH">/usr/local/Modules/netcdf-4.7.3</env>
<env name="PNETCDF_PATH">/home/joshua/Modules/pnetcdf-1.12.1</env>
</environment_variables>
<resource_limits>
<resource name="RLIMIT_STACK">-1</resource>
</resource_limits>
</machine>
</config_machines>


This is the script in .cime/config_machine.xml

I am new to CESM and Computer Science,

I desperately want to know how to set my Machine properly...

I checked all porting.pdf everywhere CESM provided, but I still cannot understand thoroughly...

Can anybody help? I really appreciate it.
 

katec

CSEG and Liaisons
Staff member
Can you attach a screen shot of the command that you ran and the error that you get? And the full path to this file?
 

jedwards

CSEG and Liaisons
Staff member
If you explicitly use --machine acmg does it work correctly?
what is the output of hostname -f on your system?
 

joshua

Hyunggyu, Song
New Member
1. This is the command I used ./create_newcase --case ~/cases/b.day1 --res f19_g17 --compset B1850 --machine acmg
2. After typing hostname -f, it says 'a001.chungbuk.ac.kr'

Thanks for reply! stiil cannot do that properly though.
 

joshua

Hyunggyu, Song
New Member
1. This is the command I used ./create_newcase --case ~/cases/b.day1 --res f19_g17 --compset B1850 --machine acmg
2. After typing hostname -f, it says 'a001.chungbuk.ac.kr'
After finding out hostname, I revised the
<NODENAME_REGEX>a00\d.chungbuk.ac.kr</NODENAME_REGEX>
but still ERROR:
Compset longname is 1850_CAM60_CLM50%BGC-CROP_CICE_POP2%ECO_MOSART_CISM2%NOEVOLVE_WW3_BGC%BDRD
Compset specification file is /home/joshua/my_cesm_sandbox/cime/../cime_config/config_compsets.xml
Compset forcing is 1850
Com forcing is Biogeochemistry intercomponent with diagnostic CO2
ATM component is CAM cam6 physics:
LND component is clm5.0:BGC (vert. resol. CN and methane) with prognostic crop:
ICE component is Sea ICE (cice) model version 5
OCN component is POP2 Ecosystem
ROF component is MOSART: MOdel for Scale Adaptive River Transport
GLC component is cism2 (default, higher-order, can run in parallel):cism ice evolution turned off (this is the standard configuration unless you're explicitly interested in ice evolution):
WAV component is Wave Watch
ESP component is
Pes specification file is /home/joshua/my_cesm_sandbox/cime/../cime_config/config_pes.xml
Compset specific settings: name is RUN_STARTDATE and value is 0001-01-01
ERROR: No machine acmg found
[joshua@acmg_a001 scripts]$ ./create_newcase --case test --compset B1850 --res f19_g17
Compset longname is 1850_CAM60_CLM50%BGC-CROP_CICE_POP2%ECO_MOSART_CISM2%NOEVOLVE_WW3_BGC%BDRD
Compset specification file is /home/joshua/my_cesm_sandbox/cime/../cime_config/config_compsets.xml
Compset forcing is 1850
Com forcing is Biogeochemistry intercomponent with diagnostic CO2
ATM component is CAM cam6 physics:
LND component is clm5.0:BGC (vert. resol. CN and methane) with prognostic crop:
ICE component is Sea ICE (cice) model version 5
OCN component is POP2 Ecosystem
ROF component is MOSART: MOdel for Scale Adaptive River Transport
GLC component is cism2 (default, higher-order, can run in parallel):cism ice evolution turned off (this is the standard configuration unless you're explicitly interested in ice evolution):
WAV component is Wave Watch
ESP component is
Pes specification file is /home/joshua/my_cesm_sandbox/cime/../cime_config/config_pes.xml
Compset specific settings: name is RUN_STARTDATE and value is 0001-01-01
ERROR: No machine acmg found


Thanks for reply! stiil cannot do that properly though.
 
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