Hi,
I am trying to port CESM1_1_2 (lens version) on my local cluster. I have managed to build the model, however runs crash each time during initialization of atm componenet, right after (in ccsm.log):
/gpfs01/work/reichemke/inputdata/atm/cam/chem/trop_mozart/dvel/season_wes.nc
BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
= RANK 0 PID 23089 RUNNING AT cfl204.chemfarm
= KILLED BY SIGNAL: 11 (Segmentation fault)
My env_mach_specific is:
intel/2019u5, impi/2019u5, mkl/2019u5 and netcdf/4.4.1.1
I tried to change debug to true, but no change.
Also, I tried to use the 2017 version of the intel,impi and mkl, but run still fails at the same place with different error:
control_cb (../../pm/pmiserv/pmiserv_cb.c:798): connection to proxy 20 at host cfl001.chemfarm failed
HYDT_dmxu_poll_wait_for_event (../../tools/demux/demux_poll.c:76): callback returned error status
HYD_pmci_wait_for_completion (../../pm/pmiserv/pmiserv_pmci.c:501): error waiting for event
main (../../ui/mpich/mpiexec.c:1147): process manager error waiting for completion
Another warning/error is related to reading the nc files from inputdata:
inputdata/atm/cam/chem/trop_mozart_aero/emis
inputdata/atm/cam/topo/
with the following error:
NetCDF: Invalid dimension ID or name
NetCDF: Variable not found
Any suggestions?
Thank you!!
I am trying to port CESM1_1_2 (lens version) on my local cluster. I have managed to build the model, however runs crash each time during initialization of atm componenet, right after (in ccsm.log):
/gpfs01/work/reichemke/inputdata/atm/cam/chem/trop_mozart/dvel/season_wes.nc
BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
= RANK 0 PID 23089 RUNNING AT cfl204.chemfarm
= KILLED BY SIGNAL: 11 (Segmentation fault)
My env_mach_specific is:
intel/2019u5, impi/2019u5, mkl/2019u5 and netcdf/4.4.1.1
I tried to change debug to true, but no change.
Also, I tried to use the 2017 version of the intel,impi and mkl, but run still fails at the same place with different error:
control_cb (../../pm/pmiserv/pmiserv_cb.c:798): connection to proxy 20 at host cfl001.chemfarm failed
HYDT_dmxu_poll_wait_for_event (../../tools/demux/demux_poll.c:76): callback returned error status
HYD_pmci_wait_for_completion (../../pm/pmiserv/pmiserv_pmci.c:501): error waiting for event
main (../../ui/mpich/mpiexec.c:1147): process manager error waiting for completion
Another warning/error is related to reading the nc files from inputdata:
inputdata/atm/cam/chem/trop_mozart_aero/emis
inputdata/atm/cam/topo/
with the following error:
NetCDF: Invalid dimension ID or name
NetCDF: Variable not found
Any suggestions?
Thank you!!