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[Porting] ./test.build failed when I'm trying to port CESM1_2_2

F

fkc000@163_com

Member
Hello,
I started to learn to port CESM1_2_2 recently. I did as the CESM User's Guide said, but failed at ./test.build. Here's the pio.bldlog:

set pio_dir=/disk6/fkc/cesm1_2_2/build/gnu/mpich/nodebug/nothreads/pio
cd /disk6/fkc/cesm1_2_2/build/gnu/mpich/nodebug/nothreads/pio
set cmake_opts= -D USER_CMAKE_MODULE_PATH=/disk6/fkc/cesm1_2_2/scripts/ccsm_utils/CMake
set cmake_opts= -D USER_CMAKE_MODULE_PATH=/disk6/fkc/cesm1_2_2/scripts/ccsm_utils/CMake -D GENF90_PATH=/disk6/fkc/cesm1_2_2/tools/cprnc/genf90
gmake /disk6/fkc/cesm1_2_2/build/gnu/mpich/nodebug/nothreads/pio/Makefile MODEL=pio USER_CMAKE_OPTS= -D USER_CMAKE_MODULE_PATH=/disk6/fkc/cesm1_2_2/scripts/ccsm_utils/CMake -D GENF90_PATH=/disk6/fkc/cesm1_2_2/tools/cprnc/genf90 PIO_LIBDIR=/disk6/fkc/cesm1_2_2/build/gnu/mpich/nodebug/nothreads/pio -f /disk6/fkc/cesm1_2_2/scripts/test/Tools/Makefile
cd /disk6/fkc/cesm1_2_2/build/gnu/mpich/nodebug/nothreads/pio;
CC=mpicc CXX=mpicxx FC=mpif90 LDFLAGS="" cmake -D CMAKE_Fortran_FLAGS:STRING="-O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DFORTRANUNDERSCORE -DNO_R16 -DLINUX -DCPRGNU -DHAVE_SLASHPROC -I. -I/disk6/fkc/cesm1_2_2/build/gnu/mpich/nodebug/nothreads/include -I/disk6/fkc/cesm1_2_2/build/gnu/mpich/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/disk6/fkc/packman/netcdf_c/4.3.2/0/include -I/disk6/fkc/packman/mpich/3.1.2/0/include -I/disk6/fkc/pnetcdf/include -I/disk6/fkc/cesm1_2_2/build/gnu/mpich/nodebug/nothreads/include -I/disk6/fkc/cesm1_2_2/models/csm_share/shr" -D CMAKE_C_FLAGS:STRING=" -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DFORTRANUNDERSCORE -DNO_R16 -DLINUX -DCPRGNU -DHAVE_SLASHPROC -I. -I/disk6/fkc/cesm1_2_2/build/gnu/mpich/nodebug/nothreads/include -I/disk6/fkc/cesm1_2_2/build/gnu/mpich/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/disk6/fkc/packman/netcdf_c/4.3.2/0/include -I/disk6/fkc/packman/mpich/3.1.2/0/include -I/disk6/fkc/pnetcdf/include -I/disk6/fkc/cesm1_2_2/build/gnu/mpich/nodebug/nothreads/include -I/disk6/fkc/cesm1_2_2/models/csm_share/shr" -D CMAKE_CXX_FLAGS:STRING=" -DLINUX -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DFORTRANUNDERSCORE -DNO_R16 -DLINUX -DCPRGNU -DHAVE_SLASHPROC -I. -I/disk6/fkc/cesm1_2_2/build/gnu/mpich/nodebug/nothreads/include -I/disk6/fkc/cesm1_2_2/build/gnu/mpich/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/disk6/fkc/packman/netcdf_c/4.3.2/0/include -I/disk6/fkc/packman/mpich/3.1.2/0/include -I/disk6/fkc/pnetcdf/include -I/disk6/fkc/cesm1_2_2/build/gnu/mpich/nodebug/nothreads/include -I/disk6/fkc/cesm1_2_2/models/csm_share/shr" -D CMAKE_VERBOSE_MAKEFILE:BOOL=ON -D NETCDF_DIR:STRING=/disk6/fkc/packman/netcdf_c/4.3.2/0 -D USER_CMAKE_MODULE_DIR:STRING=/disk6/fkc/cesm1_2_2/scripts/ccsm_utils/CMake -D PNETCDF_DIR:STRING="/disk6/fkc/pnetcdf" -D USER_CMAKE_MODULE_PATH=/disk6/fkc/cesm1_2_2/scripts/ccsm_utils/CMake -D GENF90_PATH=/disk6/fkc/cesm1_2_2/tools/cprnc/genf90 /disk6/fkc/cesm1_2_2/models/utils/pio
CMake Error at CMakeLists.txt:44 (TRY_COMPILE):
Unknown extension ".f90" for file

/disk6/fkc/cesm1_2_2/models/utils/pio/cmake/TryMPIIO.f90

try_compile() works only for enabled languages. Currently these are:

C CXX

See project() command to enable other languages.


-- MPIIO not detected and therefore disabled.
-- Configuring incomplete, errors occurred!
See also "/disk6/fkc/cesm1_2_2/build/gnu/mpich/nodebug/nothreads/pio/CMakeFiles/CMakeOutput.log".
gmake: *** [/disk6/fkc/cesm1_2_2/build/gnu/mpich/nodebug/nothreads/pio/Makefile] Error 1
exit 1


I'm using the gnu compiler to compile CESM and sure that gfortran is available. I guess it's just a problem concerning compiler settings. And here's my Macros file attached below.
I'm stuck here for several days. Any help would be greatly appreciated.Thanks.
 
J

jedwards

CSEG and Liaisons
Staff member
I've never seen this error before - what version of cmake are you using?Try adding  the following in the CMakeLists.txt file in the pio directory:
Code: 
ENABLE_LANGUAGE(Fortran)
 
J

jedwards

CSEG and Liaisons
Staff member
I've never seen this error before - what version of cmake are you using?Try adding  the following in the CMakeLists.txt file in the pio directory:
Code: 
ENABLE_LANGUAGE(Fortran)
 
F

fkc000@163_com

Member
It worked. Thank you very much, but another error appeared when building csmshare. Here's csm_share.bldlog. Main errors are like  /disk6/fkc/cesm1_2_2/models/csm_share/shr/shr_pcdf_mod.F90(231): error #6404: This name does not have a type, and must have an explicit type.   [PIO_64BIT_OFFSET]        if (lcdf64) nmode = ior(nmode,PIO_64BIT_OFFSET)--------------------------------------^/disk6/fkc/cesm1_2_2/models/csm_share/shr/shr_pcdf_mod.F90(231): error #6363: The intrinsic data types of the arguments must be the same.   [IOR]        if (lcdf64) nmode = ior(nmode,PIO_64BIT_OFFSET)--------------------------------------^/disk6/fkc/cesm1_2_2/models/csm_share/shr/shr_pcdf_mod.F90(235): error #6363: The intrinsic data types of the arguments must be the same.   [IOR]        if (lcdf64) nmode = ior(nmode,PIO_64BIT_OFFSET)--------------------------------------^/disk6/fkc/cesm1_2_2/models/drv/shr/seq_io_mod.F90(1170): error #6404: This name does not have a type, and must have an explicit type.   [PIO_UNLIMITED]      rcode = pio_def_dim(cpl_io_file,'time',PIO_UNLIMITED,dimid(1))---------------------------------------------^compilation aborted for /disk6/fkc/cesm1_2_2/models/drv/shr/seq_io_mod.F90 (code 1)gmake: *** [seq_io_mod.o] Error 1gmake: *** Waiting for unfinished jobs....compilation aborted for /disk6/fkc/cesm1_2_2/models/csm_share/shr/shr_pcdf_mod.F90 (code 1)gmake: *** [shr_pcdf_mod.o] Error 1 Do you have any suggestions?Thank you in advance.
 
F

fkc000@163_com

Member
It worked. Thank you very much, but another error appeared when building csmshare. Here's csm_share.bldlog. Main errors are like  /disk6/fkc/cesm1_2_2/models/csm_share/shr/shr_pcdf_mod.F90(231): error #6404: This name does not have a type, and must have an explicit type.   [PIO_64BIT_OFFSET]        if (lcdf64) nmode = ior(nmode,PIO_64BIT_OFFSET)--------------------------------------^/disk6/fkc/cesm1_2_2/models/csm_share/shr/shr_pcdf_mod.F90(231): error #6363: The intrinsic data types of the arguments must be the same.   [IOR]        if (lcdf64) nmode = ior(nmode,PIO_64BIT_OFFSET)--------------------------------------^/disk6/fkc/cesm1_2_2/models/csm_share/shr/shr_pcdf_mod.F90(235): error #6363: The intrinsic data types of the arguments must be the same.   [IOR]        if (lcdf64) nmode = ior(nmode,PIO_64BIT_OFFSET)--------------------------------------^/disk6/fkc/cesm1_2_2/models/drv/shr/seq_io_mod.F90(1170): error #6404: This name does not have a type, and must have an explicit type.   [PIO_UNLIMITED]      rcode = pio_def_dim(cpl_io_file,'time',PIO_UNLIMITED,dimid(1))---------------------------------------------^compilation aborted for /disk6/fkc/cesm1_2_2/models/drv/shr/seq_io_mod.F90 (code 1)gmake: *** [seq_io_mod.o] Error 1gmake: *** Waiting for unfinished jobs....compilation aborted for /disk6/fkc/cesm1_2_2/models/csm_share/shr/shr_pcdf_mod.F90 (code 1)gmake: *** [shr_pcdf_mod.o] Error 1 Do you have any suggestions?Thank you in advance.
 
J

jedwards

CSEG and Liaisons
Staff member
Your PIO build did not complete successfully.   Try starting over - run $case.clean_build and build again.   If the problem occurs again look in the pio bldlog for an error.   
 
J

jedwards

CSEG and Liaisons
Staff member
Your PIO build did not complete successfully.   Try starting over - run $case.clean_build and build again.   If the problem occurs again look in the pio bldlog for an error.   
 
F

fkc000@163_com

Member
Thank you for your quick reply. I started over and tried again, but the problem remained the same. Here's my pio.bldlog, I couldn't find any errors there. I configured the pio with ./configure CC=gcc FC=gfortran MPICC=mpicc MPIFC=mpif90. When downloading cesm, I failed to get the pio file from the command "svn co ftp:***" so I downloaded pio directly from https://code.google.com/p/parallelio/downloads/list, could it cause the error?
 
F

fkc000@163_com

Member
Thank you for your quick reply. I started over and tried again, but the problem remained the same. Here's my pio.bldlog, I couldn't find any errors there. I configured the pio with ./configure CC=gcc FC=gfortran MPICC=mpicc MPIFC=mpif90. When downloading cesm, I failed to get the pio file from the command "svn co ftp:***" so I downloaded pio directly from https://code.google.com/p/parallelio/downloads/list, could it cause the error?
 
J

jedwards

CSEG and Liaisons
Staff member
Yes, that's not going to be the correct version.   You should be able to svn co http://parallelio.googlecode.com/svn/trunk_tags/pio1_8_12/pio
if not, I've attached the correct tar file.   
 
J

jedwards

CSEG and Liaisons
Staff member
Yes, that's not going to be the correct version.   You should be able to svn co http://parallelio.googlecode.com/svn/trunk_tags/pio1_8_12/pio
if not, I've attached the correct tar file.   
 
F

fkc000@163_com

Member
Thank you for your time. It seems that my pio is successfully built, but the building of cesm failed. Here's my cesm.bldlog: mpif90  -o /disk6/fkc/cesm1_2_2/build/cesm.exe ccsm_comp_mod.o ccsm_driver.o mrg_mod.o seq_avdata_mod.o seq_diag_mct.o seq_domain_mct.o seq_flux_mct.o seq_frac_mct.o seq_hist_mod.o seq_map_esmf.o seq_map_mod.o seq_mctext_mod.o seq_rest_mod.o  -L/disk6/fkc/cesm1_2_2/build/lib/ -latm  -L/disk6/fkc/cesm1_2_2/build/lib/ -lice  -L/disk6/fkc/cesm1_2_2/build/lib/ -llnd  -L/disk6/fkc/cesm1_2_2/build/lib/ -locn  -L/disk6/fkc/cesm1_2_2/build/lib/ -lrof  -L/disk6/fkc/cesm1_2_2/build/lib/ -lglc  -L/disk6/fkc/cesm1_2_2/build/lib/ -lwav -L/disk6/fkc/cesm1_2_2/build/gnu/mpich/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -lcsm_share -L/disk6/fkc/cesm1_2_2/build/gnu/mpich/nodebug/nothreads/lib -lpio -lgptl -lmct -lmpeu -L/disk6/fkc/packman/netcdf_c/4.3.2/0/lib -lnetcdf  -L/disk6/fkc/pnetcdf/lib -lpnetcdf -L/disk6/fkc/packman/mpich/3.1.2/0/lib -lmpi/disk1/soft/intel//Compiler/11.0/069/lib/intel64/libimf.so: warning: warning: feupdateenv is not implemented and will always fail/disk6/fkc/cesm1_2_2/build/gnu/mpich/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share/libcsm_share.a(shr_mct_mod.o): In function `shr_mct_mod_mp_shr_mct_smatreadnc_':/disk6/fkc/cesm1_2_2/models/csm_share/shr/shr_mct_mod.F90:(.text+0x16c0): undefined reference to `nf_open_'/disk6/fkc/cesm1_2_2/models/csm_share/shr/shr_mct_mod.F90:(.text+0x16e4): undefined reference to `nf_inq_dimid_'/disk6/fkc/cesm1_2_2/models/csm_share/shr/shr_mct_mod.F90:(.text+0x16fa): undefined reference to `nf_inq_dimlen_' And there're plenty errors like that. I guess it's a problem with netcdf libs.According to the bldlog information"-L/disk6/fkc/packman/netcdf_c/4.3.2/0/lib -lnetcdf", the netcdf libs it used should be in this directory. I've copied netcdf_fortran libs to this directory but still failed. By the way, there're plenty warnings like  mpif90  -c -I.  -I/disk6/fkc/cesm1_2_2/build/gnu/mpich/nodebug/nothreads/include -I/disk6/fkc/cesm1_2_2/build/gnu/mpich/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/disk6/fkc/packman/netcdf_c/4.3.2/0/include -I/disk6/fkc/packman/mpich/3.1.2/0/include -I/disk6/fkc/pnetcdf/include -I/disk6/fkc/cesm1_2_2/build/atm/obj -I/disk6/fkc/cesm1_2_2/build/lnd/obj -I/disk6/fkc/cesm1_2_2/build/ice/obj -I/disk6/fkc/cesm1_2_2/build/ocn/obj -I/disk6/fkc/cesm1_2_2/build/glc/obj -I/disk6/fkc/cesm1_2_2/build/rof/obj -I/disk6/fkc/cesm1_2_2/build/wav/obj -I/disk6/fkc/cesm1_2_2/build/gnu/mpich/nodebug/nothreads/include -I/disk6/fkc/cesm1_2_2/models/csm_share/shr -I. -I/disk6/fkc/cesm1_2_2/scripts/test/SourceMods/src.drv -I/disk6/fkc/cesm1_2_2/models/drv/driver -I/disk6/fkc/cesm1_2_2/build/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DLINUX  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DFORTRANUNDERSCORE -DNO_R16 -DLINUX -DCPRGNU  -DHAVE_SLASHPROC -ffree-form   /disk6/fkc/cesm1_2_2/models/drv/driver/seq_avdata_mod.F90ifort: command line warning #10006: ignoring unknown option '-fconvert=big-endian'ifort: command line warning #10006: ignoring unknown option '-ffree-line-length-none'ifort: command line warning #10006: ignoring unknown option '-ffixed-line-length-none'ifort: command line warning #10006: ignoring unknown option '-ffree-form'ifort: command line warning #10006: ignoring unknown option '-fconvert=big-endian' Does that matter?
 
F

fkc000@163_com

Member
Thank you for your time. It seems that my pio is successfully built, but the building of cesm failed. Here's my cesm.bldlog: mpif90  -o /disk6/fkc/cesm1_2_2/build/cesm.exe ccsm_comp_mod.o ccsm_driver.o mrg_mod.o seq_avdata_mod.o seq_diag_mct.o seq_domain_mct.o seq_flux_mct.o seq_frac_mct.o seq_hist_mod.o seq_map_esmf.o seq_map_mod.o seq_mctext_mod.o seq_rest_mod.o  -L/disk6/fkc/cesm1_2_2/build/lib/ -latm  -L/disk6/fkc/cesm1_2_2/build/lib/ -lice  -L/disk6/fkc/cesm1_2_2/build/lib/ -llnd  -L/disk6/fkc/cesm1_2_2/build/lib/ -locn  -L/disk6/fkc/cesm1_2_2/build/lib/ -lrof  -L/disk6/fkc/cesm1_2_2/build/lib/ -lglc  -L/disk6/fkc/cesm1_2_2/build/lib/ -lwav -L/disk6/fkc/cesm1_2_2/build/gnu/mpich/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -lcsm_share -L/disk6/fkc/cesm1_2_2/build/gnu/mpich/nodebug/nothreads/lib -lpio -lgptl -lmct -lmpeu -L/disk6/fkc/packman/netcdf_c/4.3.2/0/lib -lnetcdf  -L/disk6/fkc/pnetcdf/lib -lpnetcdf -L/disk6/fkc/packman/mpich/3.1.2/0/lib -lmpi/disk1/soft/intel//Compiler/11.0/069/lib/intel64/libimf.so: warning: warning: feupdateenv is not implemented and will always fail/disk6/fkc/cesm1_2_2/build/gnu/mpich/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share/libcsm_share.a(shr_mct_mod.o): In function `shr_mct_mod_mp_shr_mct_smatreadnc_':/disk6/fkc/cesm1_2_2/models/csm_share/shr/shr_mct_mod.F90:(.text+0x16c0): undefined reference to `nf_open_'/disk6/fkc/cesm1_2_2/models/csm_share/shr/shr_mct_mod.F90:(.text+0x16e4): undefined reference to `nf_inq_dimid_'/disk6/fkc/cesm1_2_2/models/csm_share/shr/shr_mct_mod.F90:(.text+0x16fa): undefined reference to `nf_inq_dimlen_' And there're plenty errors like that. I guess it's a problem with netcdf libs.According to the bldlog information"-L/disk6/fkc/packman/netcdf_c/4.3.2/0/lib -lnetcdf", the netcdf libs it used should be in this directory. I've copied netcdf_fortran libs to this directory but still failed. By the way, there're plenty warnings like  mpif90  -c -I.  -I/disk6/fkc/cesm1_2_2/build/gnu/mpich/nodebug/nothreads/include -I/disk6/fkc/cesm1_2_2/build/gnu/mpich/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -I/disk6/fkc/packman/netcdf_c/4.3.2/0/include -I/disk6/fkc/packman/mpich/3.1.2/0/include -I/disk6/fkc/pnetcdf/include -I/disk6/fkc/cesm1_2_2/build/atm/obj -I/disk6/fkc/cesm1_2_2/build/lnd/obj -I/disk6/fkc/cesm1_2_2/build/ice/obj -I/disk6/fkc/cesm1_2_2/build/ocn/obj -I/disk6/fkc/cesm1_2_2/build/glc/obj -I/disk6/fkc/cesm1_2_2/build/rof/obj -I/disk6/fkc/cesm1_2_2/build/wav/obj -I/disk6/fkc/cesm1_2_2/build/gnu/mpich/nodebug/nothreads/include -I/disk6/fkc/cesm1_2_2/models/csm_share/shr -I. -I/disk6/fkc/cesm1_2_2/scripts/test/SourceMods/src.drv -I/disk6/fkc/cesm1_2_2/models/drv/driver -I/disk6/fkc/cesm1_2_2/build/lib/include  -O -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none  -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_WAV=1 -DLINUX  -DNDEBUG -DMCT_INTERFACE -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DFORTRANUNDERSCORE -DNO_R16 -DLINUX -DCPRGNU  -DHAVE_SLASHPROC -ffree-form   /disk6/fkc/cesm1_2_2/models/drv/driver/seq_avdata_mod.F90ifort: command line warning #10006: ignoring unknown option '-fconvert=big-endian'ifort: command line warning #10006: ignoring unknown option '-ffree-line-length-none'ifort: command line warning #10006: ignoring unknown option '-ffixed-line-length-none'ifort: command line warning #10006: ignoring unknown option '-ffree-form'ifort: command line warning #10006: ignoring unknown option '-fconvert=big-endian' Does that matter?
 
J

jedwards

CSEG and Liaisons
Staff member
mpif90 is pointing to the intel compiler - If you want to use the gnu compiler you need to make sure that the mpi wrappers are pointing to that one by setting the paths correctly in your environment.
 
J

jedwards

CSEG and Liaisons
Staff member
mpif90 is pointing to the intel compiler - If you want to use the gnu compiler you need to make sure that the mpi wrappers are pointing to that one by setting the paths correctly in your environment.
 
F

fkc000@163_com

Member
According to your suggestion, I installed mpich again and there's no compiler warning any more. But this error remains the same, here's cesm.bldlog: mpif90  -o /disk6/fkc/cesm1_2_2/build/cesm.exe ccsm_comp_mod.o ccsm_driver.o mrg_mod.o seq_avdata_mod.o seq_diag_mct.o seq_domain_mct.o seq_flux_mct.o seq_frac_mct.o seq_hist_mod.o seq_map_esmf.o seq_map_mod.o seq_mctext_mod.o seq_rest_mod.o  -L/disk6/fkc/cesm1_2_2/build/lib/ -latm  -L/disk6/fkc/cesm1_2_2/build/lib/ -lice  -L/disk6/fkc/cesm1_2_2/build/lib/ -llnd  -L/disk6/fkc/cesm1_2_2/build/lib/ -locn  -L/disk6/fkc/cesm1_2_2/build/lib/ -lrof  -L/disk6/fkc/cesm1_2_2/build/lib/ -lglc  -L/disk6/fkc/cesm1_2_2/build/lib/ -lwav -L/disk6/fkc/cesm1_2_2/build/gnu/mpich/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -lcsm_share -L/disk6/fkc/cesm1_2_2/build/gnu/mpich/nodebug/nothreads/lib -lpio -lgptl -lmct -lmpeu -L/disk6/fkc/packman/netcdf_c/4.3.2/0/lib -lnetcdf  -L/disk6/fkc/pnetcdf/lib -lpnetcdf -L/disk6/fkc/packman/mpich/3.1.2/0/lib -lmpi/disk6/fkc/cesm1_2_2/build/gnu/mpich/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share/libcsm_share.a(shr_mct_mod.o): In function `__shr_mct_mod_MOD_shr_mct_smatreaddnc':shr_mct_mod.F90:(.text+0xef0): undefined reference to `nf_open_'shr_mct_mod.F90:(.text+0xfa7): undefined reference to `nf_strerror_'shr_mct_mod.F90:(.text+0x1009): undefined reference to `nf_inq_dimid_'shr_mct_mod.F90:(.text+0x1032): undefined reference to `nf_inq_dimlen_'shr_mct_mod.F90:(.text+0x105d): undefined reference to `nf_inq_dimid_'shr_mct_mod.F90:(.text+0x1086): undefined reference to `nf_inq_dimlen_' Thank you again! 
 
F

fkc000@163_com

Member
According to your suggestion, I installed mpich again and there's no compiler warning any more. But this error remains the same, here's cesm.bldlog: mpif90  -o /disk6/fkc/cesm1_2_2/build/cesm.exe ccsm_comp_mod.o ccsm_driver.o mrg_mod.o seq_avdata_mod.o seq_diag_mct.o seq_domain_mct.o seq_flux_mct.o seq_frac_mct.o seq_hist_mod.o seq_map_esmf.o seq_map_mod.o seq_mctext_mod.o seq_rest_mod.o  -L/disk6/fkc/cesm1_2_2/build/lib/ -latm  -L/disk6/fkc/cesm1_2_2/build/lib/ -lice  -L/disk6/fkc/cesm1_2_2/build/lib/ -llnd  -L/disk6/fkc/cesm1_2_2/build/lib/ -locn  -L/disk6/fkc/cesm1_2_2/build/lib/ -lrof  -L/disk6/fkc/cesm1_2_2/build/lib/ -lglc  -L/disk6/fkc/cesm1_2_2/build/lib/ -lwav -L/disk6/fkc/cesm1_2_2/build/gnu/mpich/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share -lcsm_share -L/disk6/fkc/cesm1_2_2/build/gnu/mpich/nodebug/nothreads/lib -lpio -lgptl -lmct -lmpeu -L/disk6/fkc/packman/netcdf_c/4.3.2/0/lib -lnetcdf  -L/disk6/fkc/pnetcdf/lib -lpnetcdf -L/disk6/fkc/packman/mpich/3.1.2/0/lib -lmpi/disk6/fkc/cesm1_2_2/build/gnu/mpich/nodebug/nothreads/MCT/noesmf/a1l1r1i1o1g1w1/csm_share/libcsm_share.a(shr_mct_mod.o): In function `__shr_mct_mod_MOD_shr_mct_smatreaddnc':shr_mct_mod.F90:(.text+0xef0): undefined reference to `nf_open_'shr_mct_mod.F90:(.text+0xfa7): undefined reference to `nf_strerror_'shr_mct_mod.F90:(.text+0x1009): undefined reference to `nf_inq_dimid_'shr_mct_mod.F90:(.text+0x1032): undefined reference to `nf_inq_dimlen_'shr_mct_mod.F90:(.text+0x105d): undefined reference to `nf_inq_dimid_'shr_mct_mod.F90:(.text+0x1086): undefined reference to `nf_inq_dimlen_' Thank you again! 
 
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