dana_lapides@berkeley_edu
New Member
Hi,I am trying to build CESM on my laptop (MacOSX El Capitan). I have encountered an error with building buildlib.mct. This seems to be a common error message, but I have not been able to resolve the issue via suggestions for any other post I found. If anyone has any ideas for me to try, that would be greatly appreciated. ------------------------------------------------------------------------- CESM BUILDNML SCRIPT STARTING - To prestage restarts, untar a restart.tar file into /Users/Dana/cesm/case01 infile is /Users/Dana/cesm/case01/Buildconf/cplconf/cesm_namelist CAM writing dry deposition namelist to drv_flds_in CAM writing namelist to atm_in CLM configure done.CLM adding use_case 1850_control defaults for var sim_year with val 1850 CLM adding use_case 1850_control defaults for var sim_year_range with val constant CLM adding use_case 1850_control defaults for var use_case_desc with val Conditions to simulate 1850 land-use CICE configure done.POP2 build-namelist: ocn_grid is gx1v6 POP2 build-namelist: ocn_tracer_modules are iage CESM BUILDNML SCRIPT HAS FINISHED SUCCESSFULLY-------------------------------------------------------------------------------------------------------------------------------------------------- CESM PRESTAGE SCRIPT STARTING - Case input data directory, DIN_LOC_ROOT, is /Users/Dana/cesm1_2_2/data - Checking the existence of input datasets in DIN_LOC_ROOT CESM PRESTAGE SCRIPT HAS FINISHED SUCCESSFULLY-------------------------------------------------------------------------------------------------------------------------------------------------- CESM BUILDEXE SCRIPT STARTINGrm: No match. COMPILER is gfortran - Build Libraries: mct gptl pio csm_share Thu Sep 1 09:38:27 PDT 2016 /Users/Dana/cesm1_2_2/gfortran/openmpi/nodebug/nothreads/mct.bldlog.160901-093822ERROR: buildlib.mct failed, see /Users/Dana/cesm1_2_2/gfortran/openmpi/nodebug/nothreads/mct.bldlog.160901-093822ERROR: cat /Users/Dana/cesm1_2_2/gfortran/openmpi/nodebug/nothreads/mct.bldlog.160901-093822CONTENTS OF mct.bldlog FOLLOW Thu Sep 1 09:38:27 PDT 2016 /Users/Dana/cesm1_2_2/gfortran/openmpi/nodebug/nothreads/mct.bldlog.160901-093822setenv MCT_DIR /Users/Dana/cesm1_2_2/models/utils/mctsetenv LIBDIR /Users/Dana/cesm1_2_2/gfortran/openmpi/nodebug/nothreadssetenv MCT_LIBDIR /Users/Dana/cesm1_2_2/gfortran/openmpi/nodebug/nothreads/mctecho MCT_LIBDIR /Users/Dana/cesm1_2_2/gfortran/openmpi/nodebug/nothreads/mctMCT_LIBDIR /Users/Dana/cesm1_2_2/gfortran/openmpi/nodebug/nothreads/mctcd /Users/Dana/cesm1_2_2/gfortran/openmpi/nodebug/nothreads/mctecho Copying source to CCSM EXEROOT...Copying source to CCSM EXEROOT...cp /Users/Dana/cesm1_2_2/models/utils/mct/Makefile .mkdir mctmkdir: mct: File existscp /Users/Dana/cesm1_2_2/models/utils/mct/mct/Makefile mctmkdir mpeumkdir: mpeu: File existscp /Users/Dana/cesm1_2_2/models/utils/mct/mpeu/Makefile mpeumkdir mpi-serialmkdir: mpi-serial: File existscp /Users/Dana/cesm1_2_2/models/utils/mct/mpi-serial/Makefile mpi-serialset runconf = 0set runclean = 0echo Running configure...Running configure...echo for OS=MacOSX MACH=userdefinedfor OS=MacOSX MACH=userdefinedgmake -f /Users/Dana/cesm/case01/Tools/Makefile /Users/Dana/cesm1_2_2/gfortran/openmpi/nodebug/nothreads/mct/Makefile.confSHAREDLIBROOT |/Users/Dana/cesm1_2_2| SHAREDPATH |/Users/Dana/cesm1_2_2/gfortran/openmpi/nodebug/nothreads|checking for cc... ccchecking whether the C compiler works... noconfigure: error: in `/Users/Dana/cesm1_2_2/gfortran/openmpi/nodebug/nothreads/mct':configure: error: C compiler cannot create executablesSee `config.log' for more detailsmake: *** [/Users/Dana/cesm1_2_2/gfortran/openmpi/nodebug/nothreads/mct/Makefile.conf] Error 77if ( 0 == 1 ) thencp -p Makefile.conf Makefile.conf.oldcp: Makefile.conf: No such file or directorygmakeMakefile:4: Makefile.conf: No such file or directorymake: *** No rule to make target `Makefile.conf'. Stop.exit 1 CONTENTS OF config.log FOLLOWThis file contains any messages produced by compilers whilerunning configure, to aid debugging if configure makes a mistake. It was created by MCT configure 2.8, which wasgenerated by GNU Autoconf 2.69. Invocation command line was $ ./configure F90=gfortran ## --------- #### Platform. #### --------- ## hostname = Danas-MacBook-Pro.localuname -m = x86_64uname -r = 15.6.0uname -s = Darwinuname -v = Darwin Kernel Version 15.6.0: Thu Jun 23 18:25:34 PDT 2016; root:xnu-3248.60.10~1/RELEASE_X86_64 /usr/bin/uname -p = i386/bin/uname -X = unknown /bin/arch = unknown/usr/bin/arch -k = unknown/usr/convex/getsysinfo = unknown/usr/bin/hostinfo = Mach kernel version: Darwin Kernel Version 15.6.0: Thu Jun 23 18:25:34 PDT 2016; root:xnu-3248.60.10~1/RELEASE_X86_64Kernel configured for up to 4 processors.2 processors are physically available.4 processors are logically available.Processor type: x86_64h (Intel x86-64h Haswell)Processors active: 0 1 2 3Primary memory available: 4.00 gigabytesDefault processor set: 287 tasks, 1429 threads, 4 processorsLoad average: 1.51, Mach factor: 2.48/bin/machine = unknown/usr/bin/oslevel = unknown/bin/universe = unknown PATH: /Library/Frameworks/Python.framework/Versions/3.5/binPATH: /opt/local/binPATH: /opt/local/sbinPATH: /opt/local/binPATH: /opt/local/sbinPATH: /opt/local/binPATH: /opt/local/sbinPATH: /sbinPATH: /usr/sbinPATH: /binPATH: /usr/binPATH: /usr/local/binPATH: /opt/X11/bin ## ----------- #### Core tests. #### ----------- ## configure:2300: checking for ccconfigure:2316: found /usr/bin/ccconfigure:2327: result: ccconfigure:2358: checking for C compiler versionconfigure:2367: cc --version >&5Apple LLVM version 7.3.0 (clang-703.0.31)Target: x86_64-apple-darwin15.6.0Thread model: posixInstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/binconfigure:2378: $? = 0configure:2367: cc -v >&5Apple LLVM version 7.3.0 (clang-703.0.31)Target: x86_64-apple-darwin15.6.0Thread model: posixInstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/binconfigure:2378: $? = 0configure:2367: cc -V >&5clang: error: argument to '-V' is missing (expected 1 value)clang: error: no input filesconfigure:2378: $? = 1configure:2367: cc -qversion >&5clang: error: unknown argument: '-qversion'clang: error: no input filesconfigure:2378: $? = 1configure:2398: checking whether the C compiler worksconfigure:2420: cc conftest.c >&5configure:2424: $? = 0configure:2472: result: yesconfigure:2475: checking for C compiler default output file nameconfigure:2477: result: a.outconfigure:2483: checking for suffix of executablesconfigure:2490: cc -o conftest conftest.c >&5configure:2494: $? = 0configure:2516: result: configure:2538: checking whether we are cross compilingconfigure:2546: cc -o conftest conftest.c >&5configure:2550: $? = 0configure:2557: ./conftestconfigure:2561: $? = 0configure:2576: result: noconfigure:2581: checking for suffix of object filesconfigure:2603: cc -c conftest.c >&5configure:2607: $? = 0configure:2628: result: oconfigure:2632: checking whether we are using the GNU C compilerconfigure:2651: cc -c conftest.c >&5configure:2651: $? = 0configure:2660: result: yesconfigure:2669: checking whether cc accepts -gconfigure:2689: cc -c -g conftest.c >&5configure:2689: $? = 0configure:2730: result: yesconfigure:2747: checking for cc option to accept ISO C89configure:2810: cc -c -g -O2 conftest.c >&5configure:2810: $? = 0configure:2823: result: none neededconfigure:2851: checking how to run the C preprocessorconfigure:2882: cc -E conftest.cconfigure:2882: $? = 0configure:2896: cc -E conftest.cconftest.c:9:10: fatal error: 'ac_nonexistent.h' file not found#include ^1 error generated.configure:2896: $? = 1configure: failed program was:| /* confdefs.h */| #define PACKAGE_NAME "MCT"| #define PACKAGE_TARNAME "mct"| #define PACKAGE_VERSION "2.8"| #define PACKAGE_STRING "MCT 2.8"| #define PACKAGE_BUGREPORT ""| #define PACKAGE_URL ""| /* end confdefs.h. */| #include configure:2921: result: cc -Econfigure:2941: cc -E conftest.cconfigure:2941: $? = 0configure:2955: cc -E conftest.cconftest.c:9:10: fatal error: 'ac_nonexistent.h' file not found#include ^1 error generated.configure:2955: $? = 1configure: failed program was:| /* confdefs.h */| #define PACKAGE_NAME "MCT"| #define PACKAGE_TARNAME "mct"| #define PACKAGE_VERSION "2.8"| #define PACKAGE_STRING "MCT 2.8"| #define PACKAGE_BUGREPORT ""| #define PACKAGE_URL ""| /* end confdefs.h. */| #include configure:2984: checking for grep that handles long lines and -econfigure:3042: result: /usr/bin/grepconfigure:3047: checking for egrepconfigure:3109: result: /usr/bin/grep -Econfigure:3114: checking for ANSI C header filesconfigure:3134: cc -c -g -O2 conftest.c >&5configure:3134: $? = 0configure:3207: cc -o conftest -g -O2 conftest.c >&5configure:3207: $? = 0configure:3207: ./conftestconfigure:3207: $? = 0configure:3218: result: yesconfigure:3231: checking for sys/types.hconfigure:3231: cc -c -g -O2 conftest.c >&5configure:3231: $? = 0configure:3231: result: yesconfigure:3231: checking for sys/stat.hconfigure:3231: cc -c -g -O2 conftest.c >&5configure:3231: $? = 0configure:3231: result: yesconfigure:3231: checking for stdlib.hconfigure:3231: cc -c -g -O2 conftest.c >&5configure:3231: $? = 0configure:3231: result: yesconfigure:3231: checking for string.hconfigure:3231: cc -c -g -O2 conftest.c >&5configure:3231: $? = 0configure:3231: result: yesconfigure:3231: checking for memory.hconfigure:3231: cc -c -g -O2 conftest.c >&5configure:3231: $? = 0configure:3231: result: yesconfigure:3231: checking for strings.hconfigure:3231: cc -c -g -O2 conftest.c >&5configure:3231: $? = 0configure:3231: result: yesconfigure:3231: checking for inttypes.hconfigure:3231: cc -c -g -O2 conftest.c >&5configure:3231: $? = 0configure:3231: result: yesconfigure:3231: checking for stdint.hconfigure:3231: cc -c -g -O2 conftest.c >&5configure:3231: $? = 0configure:3231: result: yesconfigure:3231: checking for unistd.hconfigure:3231: cc -c -g -O2 conftest.c >&5configure:3231: $? = 0configure:3231: result: yesconfigure:3243: checking whether byte ordering is bigendianconfigure:3258: cc -c -g -O2 conftest.c >&5configure:3258: $? = 0configure:3303: cc -c -g -O2 conftest.c >&5configure:3303: $? = 0configure:3321: cc -c -g -O2 conftest.c >&5conftest.c:26:4: error: use of undeclared identifier 'not' not big endian ^1 error generated.configure:3321: $? = 1configure: failed program was:| /* confdefs.h */| #define PACKAGE_NAME "MCT"| #define PACKAGE_TARNAME "mct"| #define PACKAGE_VERSION "2.8"| #define PACKAGE_STRING "MCT 2.8"| #define PACKAGE_BUGREPORT ""| #define PACKAGE_URL ""| #define STDC_HEADERS 1| #define HAVE_SYS_TYPES_H 1| #define HAVE_SYS_STAT_H 1| #define HAVE_STDLIB_H 1| #define HAVE_STRING_H 1| #define HAVE_MEMORY_H 1| #define HAVE_STRINGS_H 1| #define HAVE_INTTYPES_H 1| #define HAVE_STDINT_H 1| #define HAVE_UNISTD_H 1| /* end confdefs.h. */| #include | #include | | int| main ()| {| #if BYTE_ORDER != BIG_ENDIAN| not big endian| #endif| | ;| return 0;| }configure:3449: result: noconfigure:3523: checking for nagforconfigure:3553: result: noconfigure:3523: checking for xlf95configure:3553: result: noconfigure:3523: checking for pgf95configure:3553: result: noconfigure:3523: checking for ifortconfigure:3553: result: noconfigure:3523: checking for gfortranconfigure:3539: found /usr/local/bin/gfortranconfigure:3550: result: gfortranconfigure:3576: checking for Fortran compiler versionconfigure:3585: gfortran --version >&5GNU Fortran (Homebrew gcc 6.2.0) 6.2.0Copyright (C) 2016 Free Software Foundation, Inc.This is free software; see the source for copying conditions. There is NOwarranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:3596: $? = 0configure:3585: gfortran -v >&5Using built-in specs.COLLECT_GCC=gfortranCOLLECT_LTO_WRAPPER=/usr/local/Cellar/gcc/6.2.0/libexec/gcc/x86_64-apple-darwin15.6.0/6.2.0/lto-wrapperTarget: x86_64-apple-darwin15.6.0Configured with: ../configure --build=x86_64-apple-darwin15.6.0 --prefix=/usr/local/Cellar/gcc/6.2.0 --libdir=/usr/local/Cellar/gcc/6.2.0/lib/gcc/6 --enable-languages=c,c++,objc,obj-c++,fortran --program-suffix=-6 --with-gmp=/usr/local/opt/gmp --with-mpfr=/usr/local/opt/mpfr --with-mpc=/usr/local/opt/libmpc --with-isl=/usr/local/opt/isl --with-system-zlib --enable-libstdcxx-time=yes --enable-stage1-checking --enable-checking=release --enable-lto --with-build-config=bootstrap-debug --disable-werror --with-pkgversion='Homebrew gcc 6.2.0' --with-bugurl=https://github.com/Homebrew/homebrew/issues --enable-plugin --disable-nls --enable-multilibThread model: posixgcc version 6.2.0 (Homebrew gcc 6.2.0) configure:3596: $? = 0configure:3585: gfortran -V >&5gfortran: error: unrecognized command line option '-V'gfortran: fatal error: no input filescompilation terminated.configure:3596: $? = 1configure:3585: gfortran -qversion >&5gfortran: error: unrecognized command line option '-qversion'; did you mean '--version'?gfortran: fatal error: no input filescompilation terminated.configure:3596: $? = 1configure:3605: checking whether we are using the GNU Fortran compilerconfigure:3618: gfortran -c conftest.F >&5configure:3618: $? = 0configure:3627: result: yesconfigure:3633: checking whether gfortran accepts -gconfigure:3644: gfortran -c -g conftest.f >&5configure:3644: $? = 0configure:3652: result: yesconfigure:3694: checking for Fortran flag to compile .F90 filesconfigure:3714: gfortran -c -g -O2 conftest.F90 >&5configure:3714: $? = 0configure:3723: result: noneconfigure:3762: checking for mpif90configure:3778: found /usr/local/bin/mpif90configure:3789: result: mpif90configure:3807: checking for MPI_Initconfigure:3814: mpif90 -o conftest -g -O2 conftest.F90 >&5configure:3814: $? = 0configure:3816: result: yesconfigure:3945: checking for mpif.hconfigure:3952: mpif90 -c -g -O2 conftest.F90 >&5configure:3952: $? = 0configure:3953: result: yesconfigure:4023: gfortran -c -g -O2 conftest.F90 >&5configure:4023: $? = 0configure:4038: checking how to get the version output from gfortranconfigure:4049: gfortran -c -g -O2 conftest.F90 >&5configure:4049: $? = 0configure:4068: gfortran -o conftest -g -O2 -V conftest.F90 >&5gfortran: error: unrecognized command line option '-V'configure:4068: gfortran -o conftest -g -O2 -version conftest.F90 >&5gfortran: error: unrecognized command line option '-version'configure:4068: gfortran -o conftest -g -O2 --version conftest.F90 >&5GNU Fortran (Homebrew gcc 6.2.0) 6.2.0Copyright (C) 2016 Free Software Foundation, Inc.This is free software; see the source for copying conditions. There is NOwarranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.configure:4100: result: --versionconfigure:4121: checking for Fortran flag to compile preprocessed .F filesconfigure:4146: gfortran -c -g -O2 conftest.F >&5configure:4146: $? = 0configure:4156: gfortran -c -g -O2 conftest.F >&5conftest.F:4:0: #include Fatal Error: ac_nonexistent.h: No such file or directorycompilation terminated.configure:4156: $? = 1configure: failed program was:| program main| | #if 1| #include | choke me| #endif| endconfigure:4169: result: noneconfigure:4190: checking how to define symbols for preprocessed Fortranconfigure:4212: gfortran -c -g -O2 -DFOOBAR -DZORK=42 conftest.F >&5configure:4212: $? = 0configure:4221: result: -Dconfigure:4246: checking how to get verbose linking output from gfortranconfigure:4256: gfortran -c -g -O2 conftest.F >&5configure:4256: $? = 0configure:4274: gfortran -o conftest -g -O2 -v conftest.FUsing built-in specs.Target: x86_64-apple-darwin15.6.0Thread model: posixgcc version 6.2.0 (Homebrew gcc 6.2.0) /usr/local/Cellar/gcc/6.2.0/libexec/gcc/x86_64-apple-darwin15.6.0/6.2.0/f951 conftest.F -ffixed-form -cpp=/var/folders/ph/3400xfz91s31kgk84vh9pfpr0000gq/T//ccibf1zA.f90 -quiet -v -D__DYNAMIC__ conftest.F -fPIC -feliminate-unused-debug-symbols -quiet -dumpbase conftest.F -mmacosx-version-min=10.11.6 -mtune=core2 -auxbase conftest -g -O2 -version -fintrinsic-modules-path /usr/local/Cellar/gcc/6.2.0/lib/gcc/6/gcc/x86_64-apple-darwin15.6.0/6.2.0/finclude -o /var/folders/ph/3400xfz91s31kgk84vh9pfpr0000gq/T//cc0UqmBK.sGNU Fortran (Homebrew gcc 6.2.0) version 6.2.0 (x86_64-apple-darwin15.6.0) compiled by GNU C version 6.2.0, GMP version 6.1.1, MPFR version 3.1.4-p1, MPC version 1.0.3, isl version 0.15GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072ignoring nonexistent directory "/usr/local/Cellar/gcc/6.2.0/lib/gcc/6/gcc/x86_64-apple-darwin15.6.0/6.2.0/../../../../../../x86_64-apple-darwin15.6.0/include"#include "..." search starts here:#include search starts here: /usr/local/Cellar/gcc/6.2.0/lib/gcc/6/gcc/x86_64-apple-darwin15.6.0/6.2.0/finclude /usr/local/Cellar/gcc/6.2.0/lib/gcc/6/gcc/x86_64-apple-darwin15.6.0/6.2.0/include /usr/local/include /usr/local/Cellar/gcc/6.2.0/include /usr/local/Cellar/gcc/6.2.0/lib/gcc/6/gcc/x86_64-apple-darwin15.6.0/6.2.0/include-fixed /usr/includeEnd of search list.GNU Fortran2008 (Homebrew gcc 6.2.0) version 6.2.0 (x86_64-apple-darwin15.6.0) compiled by GNU C version 6.2.0, GMP version 6.1.1, MPFR version 3.1.4-p1, MPC version 1.0.3, isl version 0.15GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 as -arch x86_64 -force_cpusubtype_ALL -o /var/folders/ph/3400xfz91s31kgk84vh9pfpr0000gq/T//ccQwLrUi.o /var/folders/ph/3400xfz91s31kgk84vh9pfpr0000gq/T//cc0UqmBK.sReading specs from /usr/local/Cellar/gcc/6.2.0/lib/gcc/6/gcc/x86_64-apple-darwin15.6.0/6.2.0/../../../libgfortran.specrename spec lib to liborig /usr/local/Cellar/gcc/6.2.0/libexec/gcc/x86_64-apple-darwin15.6.0/6.2.0/collect2 -dynamic -arch x86_64 -macosx_version_min 10.11.6 -weak_reference_mismatches non-weak -o conftest -L/usr/local/Cellar/gcc/6.2.0/lib/gcc/6/gcc/x86_64-apple-darwin15.6.0/6.2.0 -L/usr/local/Cellar/gcc/6.2.0/lib/gcc/6/gcc/x86_64-apple-darwin15.6.0/6.2.0/../../.. /var/folders/ph/3400xfz91s31kgk84vh9pfpr0000gq/T//ccQwLrUi.o -lgfortran -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc -lquadmath -lm -lgcc_ext.10.5 -lgcc -lSystem -v -idsym -dsymcollect2 version 6.2.0/usr/bin/ld -dynamic -arch x86_64 -macosx_version_min 10.11.6 -weak_reference_mismatches non-weak -o conftest -L/usr/local/Cellar/gcc/6.2.0/lib/gcc/6/gcc/x86_64-apple-darwin15.6.0/6.2.0 -L/usr/local/Cellar/gcc/6.2.0/lib/gcc/6/gcc/x86_64-apple-darwin15.6.0/6.2.0/../../.. /var/folders/ph/3400xfz91s31kgk84vh9pfpr0000gq/T//ccQwLrUi.o -lgfortran -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc -lquadmath -lm -lgcc_ext.10.5 -lgcc -lSystem -v@(#)PROGRAM:ld PROJECT:ld64-264.3.102configured to support archs: armv6 armv7 armv7s arm64 i386 x86_64 x86_64h armv6m armv7k armv7m armv7em (tvOS)Library search paths: /usr/local/Cellar/gcc/6.2.0/lib/gcc/6/gcc/x86_64-apple-darwin15.6.0/6.2.0 /usr/local/Cellar/gcc/6.2.0/lib/gcc/6 /usr/lib /usr/local/libFramework search paths: /Library/Frameworks/ /System/Library/Frameworks/ /usr/bin/nm -n /var/folders/ph/3400xfz91s31kgk84vh9pfpr0000gq/T//ccQwLrUi.odsymutil conftestconfigure:4357: result: -vconfigure:4359: checking for Fortran libraries of gfortranconfigure:4382: gfortran -o conftest -g -O2 -v conftest.FUsing built-in specs.Target: x86_64-apple-darwin15.6.0Thread model: posixgcc version 6.2.0 (Homebrew gcc 6.2.0) /usr/local/Cellar/gcc/6.2.0/libexec/gcc/x86_64-apple-darwin15.6.0/6.2.0/f951 conftest.F -ffixed-form -cpp=/var/folders/ph/3400xfz91s31kgk84vh9pfpr0000gq/T//cc1Brulb.f90 -quiet -v -D__DYNAMIC__ conftest.F -fPIC -feliminate-unused-debug-symbols -quiet -dumpbase conftest.F -mmacosx-version-min=10.11.6 -mtune=core2 -auxbase conftest -g -O2 -version -fintrinsic-modules-path /usr/local/Cellar/gcc/6.2.0/lib/gcc/6/gcc/x86_64-apple-darwin15.6.0/6.2.0/finclude -o /var/folders/ph/3400xfz91s31kgk84vh9pfpr0000gq/T//ccSnUPir.sGNU Fortran (Homebrew gcc 6.2.0) version 6.2.0 (x86_64-apple-darwin15.6.0) compiled by GNU C version 6.2.0, GMP version 6.1.1, MPFR version 3.1.4-p1, MPC version 1.0.3, isl version 0.15GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072ignoring nonexistent directory "/usr/local/Cellar/gcc/6.2.0/lib/gcc/6/gcc/x86_64-apple-darwin15.6.0/6.2.0/../../../../../../x86_64-apple-darwin15.6.0/include"#include "..." search starts here:#include search starts here: /usr/local/Cellar/gcc/6.2.0/lib/gcc/6/gcc/x86_64-apple-darwin15.6.0/6.2.0/finclude /usr/local/Cellar/gcc/6.2.0/lib/gcc/6/gcc/x86_64-apple-darwin15.6.0/6.2.0/include /usr/local/include /usr/local/Cellar/gcc/6.2.0/include /usr/local/Cellar/gcc/6.2.0/lib/gcc/6/gcc/x86_64-apple-darwin15.6.0/6.2.0/include-fixed /usr/includeEnd of search list.GNU Fortran2008 (Homebrew gcc 6.2.0) version 6.2.0 (x86_64-apple-darwin15.6.0) compiled by GNU C version 6.2.0, GMP version 6.1.1, MPFR version 3.1.4-p1, MPC version 1.0.3, isl version 0.15GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 as -arch x86_64 -force_cpusubtype_ALL -o /var/folders/ph/3400xfz91s31kgk84vh9pfpr0000gq/T//ccf4katK.o /var/folders/ph/3400xfz91s31kgk84vh9pfpr0000gq/T//ccSnUPir.sReading specs from /usr/local/Cellar/gcc/6.2.0/lib/gcc/6/gcc/x86_64-apple-darwin15.6.0/6.2.0/../../../libgfortran.specrename spec lib to liborig /usr/local/Cellar/gcc/6.2.0/libexec/gcc/x86_64-apple-darwin15.6.0/6.2.0/collect2 -dynamic -arch x86_64 -macosx_version_min 10.11.6 -weak_reference_mismatches non-weak -o conftest -L/usr/local/Cellar/gcc/6.2.0/lib/gcc/6/gcc/x86_64-apple-darwin15.6.0/6.2.0 -L/usr/local/Cellar/gcc/6.2.0/lib/gcc/6/gcc/x86_64-apple-darwin15.6.0/6.2.0/../../.. /var/folders/ph/3400xfz91s31kgk84vh9pfpr0000gq/T//ccf4katK.o -lgfortran -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc -lquadmath -lm -lgcc_ext.10.5 -lgcc -lSystem -v -idsym -dsymcollect2 version 6.2.0/usr/bin/ld -dynamic -arch x86_64 -macosx_version_min 10.11.6 -weak_reference_mismatches non-weak -o conftest -L/usr/local/Cellar/gcc/6.2.0/lib/gcc/6/gcc/x86_64-apple-darwin15.6.0/6.2.0 -L/usr/local/Cellar/gcc/6.2.0/lib/gcc/6/gcc/x86_64-apple-darwin15.6.0/6.2.0/../../.. /var/folders/ph/3400xfz91s31kgk84vh9pfpr0000gq/T//ccf4katK.o -lgfortran -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc -lquadmath -lm -lgcc_ext.10.5 -lgcc -lSystem -v@(#)PROGRAM:ld PROJECT:ld64-264.3.102configured to support archs: armv6 armv7 armv7s arm64 i386 x86_64 x86_64h armv6m armv7k armv7m armv7em (tvOS)Library search paths: /usr/local/Cellar/gcc/6.2.0/lib/gcc/6/gcc/x86_64-apple-darwin15.6.0/6.2.0 /usr/local/Cellar/gcc/6.2.0/lib/gcc/6 /usr/lib /usr/local/libFramework search paths: /Library/Frameworks/ /System/Library/Frameworks/ /usr/bin/nm -n /var/folders/ph/3400xfz91s31kgk84vh9pfpr0000gq/T//ccf4katK.odsymutil conftestconfigure:4574: result: -L/usr/local/Cellar/gcc/6.2.0/lib/gcc/6/gcc/x86_64-apple-darwin15.6.0/6.2.0 -L/usr/local/Cellar/gcc/6.2.0/lib/gcc/6/gcc/x86_64-apple-darwin15.6.0/6.2.0/../../.. -lgfortran -lquadmath -lmconfigure:4590: checking for dummy main to link with Fortran librariesconfigure:4624: cc -o conftest -g -O2 conftest.c -L/usr/local/Cellar/gcc/6.2.0/lib/gcc/6/gcc/x86_64-apple-darwin15.6.0/6.2.0 -L/usr/local/Cellar/gcc/6.2.0/lib/gcc/6/gcc/x86_64-apple-darwin15.6.0/6.2.0/../../.. -lgfortran -lquadmath -lm >&5configure:4624: $? = 0configure:4669: result: noneconfigure:4702: checking for Fortran name-mangling schemeconfigure:4715: gfortran -c -g -O2 conftest.F >&5configure:4715: $? = 0configure:4756: cc -o conftest -g -O2 conftest.c cfortran_test.o -L/usr/local/Cellar/gcc/6.2.0/lib/gcc/6/gcc/x86_64-apple-darwin15.6.0/6.2.0 -L/usr/local/Cellar/gcc/6.2.0/lib/gcc/6/gcc/x86_64-apple-darwin15.6.0/6.2.0/../../.. -lgfortran -lquadmath -lm >&5Undefined symbols for architecture x86_64: "_foobar", referenced from: _main in conftest-4ad953.o (maybe you meant: _foobar_)ld: symbol(s) not found for architecture x86_64clang: error: linker command failed with exit code 1 (use -v to see invocation)configure:4756: $? = 1configure: failed program was:| /* confdefs.h */| #define PACKAGE_NAME "MCT"| #define PACKAGE_TARNAME "mct"| #define PACKAGE_VERSION "2.8"| #define PACKAGE_STRING "MCT 2.8"| #define PACKAGE_BUGREPORT ""| #define PACKAGE_URL ""| #define STDC_HEADERS 1| #define HAVE_SYS_TYPES_H 1| #define HAVE_SYS_STAT_H 1| #define HAVE_STDLIB_H 1| #define HAVE_STRING_H 1| #define HAVE_MEMORY_H 1| #define HAVE_STRINGS_H 1| #define HAVE_INTTYPES_H 1| #define HAVE_STDINT_H 1| #define HAVE_UNISTD_H 1| #define HAVE_MPI 1| /* end confdefs.h. */| | /* Override any GCC internal prototype to avoid an error.| Use char because int might match the return type of a GCC| builtin and then its argument prototype would still apply. */| #ifdef __cplusplus| extern "C"| #endif| char foobar ();| #ifdef FC_DUMMY_MAIN| #ifndef FC_DUMMY_MAIN_EQ_F77| # ifdef __cplusplus| extern "C"| # endif| int FC_DUMMY_MAIN() { return 1; }| #endif| #endif| int| main ()| {| return foobar ();| ;| return 0;| }configure:4756: cc -o conftest -g -O2 conftest.c cfortran_test.o -L/usr/local/Cellar/gcc/6.2.0/lib/gcc/6/gcc/x86_64-apple-darwin15.6.0/6.2.0 -L/usr/local/Cellar/gcc/6.2.0/lib/gcc/6/gcc/x86_64-apple-darwin15.6.0/6.2.0/../../.. -lgfortran -lquadmath -lm >&5configure:4756: $? = 0configure:4814: cc -o conftest -g -O2 conftest.c cfortran_test.o -L/usr/local/Cellar/gcc/6.2.0/lib/gcc/6/gcc/x86_64-apple-darwin15.6.0/6.2.0 -L/usr/local/Cellar/gcc/6.2.0/lib/gcc/6/gcc/x86_64-apple-darwin15.6.0/6.2.0/../../.. -lgfortran -lquadmath -lm >&5configure:4814: $? = 0configure:4856: result: lower case, underscore, no extra underscoreconfigure:5498: creating ./config.status ## ---------------------- #### Running config.status. #### ---------------------- ## This file was extended by MCT config.status 2.8, which wasgenerated by GNU Autoconf 2.69. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status on Danas-MacBook-Pro.local config.status:833: creating Makefile.confconfig.status:833: creating config.h ## ---------------- #### Cache variables. #### ---------------- ## ac_cv_c_bigendian=noac_cv_c_compiler_gnu=yesac_cv_env_AR_set=ac_cv_env_AR_value=ac_cv_env_BABELROOT_set=ac_cv_env_BABELROOT_value=ac_cv_env_BIT64_set=ac_cv_env_BIT64_value=ac_cv_env_CC_set=ac_cv_env_CC_value=ac_cv_env_CFLAGS_set=ac_cv_env_CFLAGS_value=ac_cv_env_COMPILER_ROOT_set=ac_cv_env_COMPILER_ROOT_value=ac_cv_env_CPPFLAGS_set=ac_cv_env_CPPFLAGS_value=ac_cv_env_CPP_set=ac_cv_env_CPP_value=ac_cv_env_DEBUG_set=ac_cv_env_DEBUG_value=ac_cv_env_ENDIAN_set=ac_cv_env_ENDIAN_value=ac_cv_env_FCFLAGS_set=ac_cv_env_FCFLAGS_value=ac_cv_env_FC_set=ac_cv_env_FC_value=ac_cv_env_FORT_SIZE_set=ac_cv_env_FORT_SIZE_value=ac_cv_env_FPPFLAGS_set=ac_cv_env_FPPFLAGS_value=ac_cv_env_FPP_set=ac_cv_env_FPP_value=ac_cv_env_INCLUDEFLAG_set=ac_cv_env_INCLUDEFLAG_value=ac_cv_env_INCLUDEPATH_set=ac_cv_env_INCLUDEPATH_value=ac_cv_env_LDFLAGS_set=ac_cv_env_LDFLAGS_value=ac_cv_env_LIBS_set=ac_cv_env_LIBS_value=ac_cv_env_MPIFC_set=ac_cv_env_MPIFC_value=ac_cv_env_MPIHEADER_set=ac_cv_env_MPIHEADER_value=ac_cv_env_MPILIBS_set=ac_cv_env_MPILIBS_value=ac_cv_env_OPT_set=ac_cv_env_OPT_value=ac_cv_env_PROGFCFLAGS_set=ac_cv_env_PROGFCFLAGS_value=ac_cv_env_RANLIB_set=ac_cv_env_RANLIB_value=ac_cv_env_REAL8_set=ac_cv_env_REAL8_value=ac_cv_env_build_alias_set=ac_cv_env_build_alias_value=ac_cv_env_host_alias_set=ac_cv_env_host_alias_value=ac_cv_env_target_alias_set=ac_cv_env_target_alias_value=ac_cv_fc_compiler_gnu=yesac_cv_fc_dummy_main=noneac_cv_fc_libs=' -L/usr/local/Cellar/gcc/6.2.0/lib/gcc/6/gcc/x86_64-apple-darwin15.6.0/6.2.0 -L/usr/local/Cellar/gcc/6.2.0/lib/gcc/6/gcc/x86_64-apple-darwin15.6.0/6.2.0/../../.. -lgfortran -lquadmath -lm'ac_cv_fc_mangling='lower case, underscore, no extra underscore'ac_cv_fc_pp_define=-Dac_cv_fc_pp_srcext_F=noneac_cv_fc_srcext_F90=noneac_cv_fortran_dummy_main=noneac_cv_header_inttypes_h=yesac_cv_header_memory_h=yesac_cv_header_stdc=yesac_cv_header_stdint_h=yesac_cv_header_stdlib_h=yesac_cv_header_string_h=yesac_cv_header_strings_h=yesac_cv_header_sys_stat_h=yesac_cv_header_sys_types_h=yesac_cv_header_unistd_h=yesac_cv_objext=oac_cv_path_EGREP='/usr/bin/grep -E'ac_cv_path_GREP=/usr/bin/grepac_cv_prog_CPP='cc -E'ac_cv_prog_MPIFC=mpif90ac_cv_prog_ac_ct_CC=ccac_cv_prog_ac_ct_FC=gfortranac_cv_prog_cc_c89=ac_cv_prog_cc_g=yesac_cv_prog_fc_g=yesac_cv_prog_fc_v=-vac_cv_prog_fc_version=--version ## ----------------- #### Output variables. #### ----------------- ## AR='ar cq'BABELROOT=''BIT64=''CC='cc'CFLAGS='-g -O2'COMPILER_ROOT=''CPP='cc -E'CPPDEFS=' -DSYSDARWIN -DCPRGNU'CPPFLAGS=''CRULE='.c.o'DEBUG=''DEFS='-DHAVE_CONFIG_H'ECHO_C='c'ECHO_N=''ECHO_T=''EGREP='/usr/bin/grep -E'ENDIAN=''EXEEXT=''FC='gfortran'FCFLAGS=''FCFLAGS_F90=''FCFLAGS_F=''FCLIBS=' -L/usr/local/Cellar/gcc/6.2.0/lib/gcc/6/gcc/x86_64-apple-darwin15.6.0/6.2.0 -L/usr/local/Cellar/gcc/6.2.0/lib/gcc/6/gcc/x86_64-apple-darwin15.6.0/6.2.0/../../.. -lgfortran -lquadmath -lm'FC_DEFINE='-D'FORT_SIZE=''FPP=''FPPFLAGS=''GREP='/usr/bin/grep'INCLUDEFLAG='-I'INCLUDEPATH=''LDFLAGS=''LIBOBJS=''LIBS=''LTLIBOBJS=''MPIFC='mpif90'MPIHEADER=''MPILIBS=''MPISERPATH=''OBJEXT='o'OPT='-O2'PACKAGE_BUGREPORT=''PACKAGE_NAME='MCT'PACKAGE_STRING='MCT 2.8'PACKAGE_TARNAME='mct'PACKAGE_URL=''PACKAGE_VERSION='2.8'PATH_SEPARATOR=':'PROGFCFLAGS=''PYTHON=''PYTHONOPTS=''RANLIB='ranlib -c'REAL8=''SHELL='/bin/sh'ac_ct_CC='cc'ac_ct_FC='gfortran'bindir='${exec_prefix}/bin'build_alias=''datadir='${datarootdir}'datarootdir='${prefix}/share'docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'dvidir='${docdir}'exec_prefix='${prefix}'host_alias=''htmldir='${docdir}'includedir='${prefix}/include'infodir='${datarootdir}/info'libdir='${exec_prefix}/lib'libexecdir='${exec_prefix}/libexec'localedir='${datarootdir}/locale'localstatedir='${prefix}/var'mandir='${datarootdir}/man'oldincludedir='/usr/include'pdfdir='${docdir}'prefix='/usr/local'program_transform_name='s,x,x,'psdir='${docdir}'sbindir='${exec_prefix}/sbin'sharedstatedir='${prefix}/com'sysconfdir='${prefix}/etc'target_alias='' ## ----------- #### confdefs.h. #### ----------- ## /* confdefs.h */#define PACKAGE_NAME "MCT"#define PACKAGE_TARNAME "mct"#define PACKAGE_VERSION "2.8"#define PACKAGE_STRING "MCT 2.8"#define PACKAGE_BUGREPORT ""#define PACKAGE_URL ""#define STDC_HEADERS 1#define HAVE_SYS_TYPES_H 1#define HAVE_SYS_STAT_H 1#define HAVE_STDLIB_H 1#define HAVE_STRING_H 1#define HAVE_MEMORY_H 1#define HAVE_STRINGS_H 1#define HAVE_INTTYPES_H 1#define HAVE_STDINT_H 1#define HAVE_UNISTD_H 1#define HAVE_MPI 1#define FC_FUNC(name,NAME) name ## _#define FC_FUNC_(name,NAME) name ## _ configure: exit 0