Scheduled Downtime
On Tuesday 24 October 2023 @ 5pm MT the forums will be in read only mode in preparation for the downtime. On Wednesday 25 October 2023 @ 5am MT, this website will be down for maintenance and expected to return online later in the morning.
Normal Operations
The forums are back online with normal operations. If you notice any issues or errors related to the forums, please reach out to help@ucar.edu

Problem in configuring CESM1_2_0 on linux platform.

R

rakeshtejak@gmail_com

Rakesh Teja Konduru
Member
Hi,I started using CESM1_2_0. Whie configuring i got following problem: Issuing command to the CICE configure utility:/shome/rakeshkcas1/cam/cam5/cam5/cesm1_2_0/models/ice/cice/bld/configure -hgrid 10x15 -cice_mode prescribed -ntr_aero 0 -nx 24 -ny 19 -bsizex 6 -bsizey 19 -maxblocks 4 -decomptype blkrobin -cache config_cache_cice.xml -cachedir /shome/rakeshkcas1/cam/raki/cam_test/cesm_1_2_0/sim2/p_bld
CICE configure done.
MCT configure is done.
creating /shome/rakeshkcas1/cam/raki/cam_test/cesm_1_2_0/sim2/p_bld/Filepath
creating /shome/rakeshkcas1/cam/raki/cam_test/cesm_1_2_0/sim2/p_bld/Makefile
creating /shome/rakeshkcas1/cam/raki/cam_test/cesm_1_2_0/sim2/p_bld/config.h
creating /shome/rakeshkcas1/cam/raki/cam_test/cesm_1_2_0/sim2/p_bld/config_cache.xml
Looking for a valid GNU make... using gmake
Testing for Fortran 90 compatible compiler... using ifort
Test linking to NetCDF library... **** FAILED ****
Issued the command:
gmake -f /shome/rakeshkcas1/cam/raki/cam_test/cesm_1_2_0/sim2/p_bld/Makefile test_nc 2>&1The output was:
cat: Srcfiles: No such file or directory
/shome/rakeshkcas1/cam/raki/cam_test/cesm_1_2_0/sim2/p_bld/Makefile:1052: /shome/rakeshkcas1/cam/raki/cam_test/cesm_1_2_0/sim2/p_bld/configure-tests/Depends: No such file or directory
/shome/rakeshkcas1/cam/cam5/cam5/cesm1_2_0/models/atm/cam/bld/mkSrcfiles > /shome/rakeshkcas1/cam/raki/cam_test/cesm_1_2_0/sim2/p_bld/configure-tests/Srcfiles
/shome/rakeshkcas1/cam/cam5/cam5/cesm1_2_0/models/atm/cam/bld/mkDepends Filepath Srcfiles > /shome/rakeshkcas1/cam/raki/cam_test/cesm_1_2_0/sim2/p_bld/configure-tests/Depends
ifort -c -I. -I/shome/rakeshkcas1/cam/raki/cam_test/cesm_1_2_0/sim2/p_bld/configure-tests -I/opt/NETCDF/intel_NETCDF/include -I/shome/rakeshkcas1/cam/raki/cam_test/cesm_1_2_0/sim2/p_bld/mct/mct -I/shome/rakeshkcas1/cam/raki/cam_test/cesm_1_2_0/sim2/p_bld/mct/mpeu -I/shome/rakeshkcas1/cam/raki/cam_test/cesm_1_2_0/sim2/p_bld/mct/mpi-serial -I/opt/NETCDF/intel_NETCDF/include -DNO_SHR_VMATH -DSEQ_MCT -DNO_C_SIZEOF -DFORTRANUNDERSCORE -DCO2A -DMAXPATCH_PFT=numpft+1 -DLSMLAT=1 -DLSMLON=1 -DPLON=24 -DPLAT=19 -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_ROF=1 -DNUM_COMP_INST_WAV=1 -DPLEV=30 -DPCNST=25 -DPCOLS=16 -DPSUBCOLS=1 -DPTRM=1 -DPTRN=1 -DPTRK=1 -DSTAGGERED -DCCSMCOUPLED -Dcoupled -Dncdf -DNCAT=1 -DNXGLOB=24 -DNYGLOB=19 -DNTR_AERO=0 -DBLCKX=6 -DBLCKY=19 -DMXBLCKS=4 -DMODAL_AERO -DMODAL_AERO_3MODE -D_USEBOX -D_NETCDF -DLINUX -DCPRINTEL -ftz -convert big_endian -fp-model precise -check all -check noarg_temp_created -fpe0 -g -traceback -DHIDE_MPI -D_MPISERIAL -DNO_MPIMOD -DNO_MPI2 -DNO_SIZEOF test_nc.F90
ifort -o test_nc -I. -I/shome/rakeshkcas1/cam/raki/cam_test/cesm_1_2_0/sim2/p_bld/configure-tests -I/opt/NETCDF/intel_NETCDF/include -I/shome/rakeshkcas1/cam/raki/cam_test/cesm_1_2_0/sim2/p_bld/mct/mct -I/shome/rakeshkcas1/cam/raki/cam_test/cesm_1_2_0/sim2/p_bld/mct/mpeu -I/shome/rakeshkcas1/cam/raki/cam_test/cesm_1_2_0/sim2/p_bld/mct/mpi-serial -I/opt/NETCDF/intel_NETCDF/include -DNO_SHR_VMATH -DSEQ_MCT -DNO_C_SIZEOF -DFORTRANUNDERSCORE -DCO2A -DMAXPATCH_PFT=numpft+1 -DLSMLAT=1 -DLSMLON=1 -DPLON=24 -DPLAT=19 -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_ROF=1 -DNUM_COMP_INST_WAV=1 -DPLEV=30 -DPCNST=25 -DPCOLS=16 -DPSUBCOLS=1 -DPTRM=1 -DPTRN=1 -DPTRK=1 -DSTAGGERED -DCCSMCOUPLED -Dcoupled -Dncdf -DNCAT=1 -DNXGLOB=24 -DNYGLOB=19 -DNTR_AERO=0 -DBLCKX=6 -DBLCKY=19 -DMXBLCKS=4 -DMODAL_AERO -DMODAL_AERO_3MODE -D_USEBOX -D_NETCDF -DLINUX -DCPRINTEL -ftz -convert big_endian -fp-model precise -check all -check noarg_temp_created -fpe0 -g -traceback -DHIDE_MPI -D_MPISERIAL -DNO_MPIMOD -DNO_MPI2 -DNO_SIZEOF test_nc.o -L/opt/NETCDF/intel_NETCDF/lib -lnetcdf -lnetcdff -Wl,-rpath=/opt/NETCDF/intel_NETCDF/lib
ld: cannot find -lnetcdff
gmake: *** [test_nc] Error 1 Please help me in this regard. Thank you
 
J

jedwards

CSEG and Liaisons
Staff member
In more recent versions of netcdf the c and fortran libraries are distributed seperatly.   Make sure that your site has installed the fortran library, it should be in/opt/NETCDF/intel_NETCDF/lib/libnetcdff.a 
 
R

rakeshtejak@gmail_com

Rakesh Teja Konduru
Member
Hi,Thank you for your reply. After installing fortran netcdf library..i got following error. Issuing command to the CICE configure utility:  /shome/rakeshkcas1/cam/cam5/cam5/cesm1_2_0/models/ice/cice/bld/configure -hgrid 10x15 -cice_mode prescribed -ntr_aero 0 -nx 24 -ny 19 -bsizex 6 -bsizey 19 -maxblocks 4 -decomptype blkrobin -cache config_cache_cice.xml -cachedir /shome/rakeshkcas1/cam/raki/cam_test/cesm_1_2_0/sim2/p_bldCICE configure done.MCT configure is done.creating /shome/rakeshkcas1/cam/raki/cam_test/cesm_1_2_0/sim2/p_bld/Filepathcreating /shome/rakeshkcas1/cam/raki/cam_test/cesm_1_2_0/sim2/p_bld/Makefilecreating /shome/rakeshkcas1/cam/raki/cam_test/cesm_1_2_0/sim2/p_bld/config.hcreating /shome/rakeshkcas1/cam/raki/cam_test/cesm_1_2_0/sim2/p_bld/config_cache.xmlLooking for a valid GNU make... using gmakeTesting for Fortran 90 compatible compiler... using ifortTest linking to NetCDF library... **** FAILED ****Issued the command:gmake -f /shome/rakeshkcas1/cam/raki/cam_test/cesm_1_2_0/sim2/p_bld/Makefile test_nc 2>&1 The output was:cat: Srcfiles: No such file or directory/shome/rakeshkcas1/cam/raki/cam_test/cesm_1_2_0/sim2/p_bld/Makefile:1052: /shome/rakeshkcas1/cam/raki/cam_test/cesm_1_2_0/sim2/p_bld/configure-tests/Depends: No such file or directory/shome/rakeshkcas1/cam/cam5/cam5/cesm1_2_0/models/atm/cam/bld/mkSrcfiles > /shome/rakeshkcas1/cam/raki/cam_test/cesm_1_2_0/sim2/p_bld/configure-tests/Srcfiles/shome/rakeshkcas1/cam/cam5/cam5/cesm1_2_0/models/atm/cam/bld/mkDepends Filepath Srcfiles > /shome/rakeshkcas1/cam/raki/cam_test/cesm_1_2_0/sim2/p_bld/configure-tests/Dependsifort -c  -I. -I/shome/rakeshkcas1/cam/raki/cam_test/cesm_1_2_0/sim2/p_bld/configure-tests -I/shome/rakeshkcas1/netcdf4.2.1.1/include  -I/shome/rakeshkcas1/cam/raki/cam_test/cesm_1_2_0/sim2/p_bld/mct/mct -I/shome/rakeshkcas1/cam/raki/cam_test/cesm_1_2_0/sim2/p_bld/mct/mpeu -I/shome/rakeshkcas1/cam/raki/cam_test/cesm_1_2_0/sim2/p_bld/mct/mpi-serial -I/shome/rakeshkcas1/netcdf4.2.1.1/include  -DNO_SHR_VMATH -DSEQ_MCT -DNO_C_SIZEOF -DFORTRANUNDERSCORE -DCO2A -DMAXPATCH_PFT=numpft+1 -DLSMLAT=1 -DLSMLON=1 -DPLON=24 -DPLAT=19 -DNUM_COMP_INST_ATM=1 -DNUM_COMP_INST_LND=1 -DNUM_COMP_INST_OCN=1 -DNUM_COMP_INST_ICE=1 -DNUM_COMP_INST_GLC=1 -DNUM_COMP_INST_ROF=1 -DNUM_COMP_INST_WAV=1 -DPLEV=30 -DPCNST=25 -DPCOLS=16 -DPSUBCOLS=1 -DPTRM=1 -DPTRN=1 -DPTRK=1 -DSTAGGERED  -DCCSMCOUPLED -Dcoupled -Dncdf -DNCAT=1 -DNXGLOB=24 -DNYGLOB=19 -DNTR_AERO=0 -DBLCKX=6 -DBLCKY=19 -DMXBLCKS=4  -DMODAL_AERO -DMODAL_AERO_3MODE  -D_USEBOX -D_NETCDF   -DLINUX -DCPRINTEL -ftz -convert big_endian -fp-model precise  -check all -check noarg_temp_created -fpe0 -g -traceback -DHIDE_MPI -D_MPISERIAL -DNO_MPIMOD -DNO_MPI2 -DNO_SIZEOF  test_nc.F90fortcom: Error: test_nc.F90, line 2: This module file was not generated by any release of this compiler.   [NETCDF]   use netcdf-------^fortcom: Error: test_nc.F90, line 5: This name does not have a type, and must have an explicit type.   [NF90_CREATE]   ret = nf90_create('foo.nc', NF90_CLOBBER, ncid)---------^fortcom: Error: test_nc.F90, line 6: This name does not have a type, and must have an explicit type.   [NF90_NOERR]   if ( ret == NF90_NOERR ) then---------------^fortcom: Error: test_nc.F90, line 9: This name does not have a type, and must have an explicit type.   [NF90_STRERROR]      print *, nf90_strerror( ret )---------------^compilation aborted for test_nc.F90 (code 1)gmake: *** [test_nc.o] Error 1 Please help me in this regard. 
 
You must log in or register to reply here.
Top