Problem in during building executable using case.build (clm 5.0)

[Anuj]

Dear all,

I am building a case but find some error.
ERROR: File not found: domainfile
How these following input data sets will download or create.
Please help me this regard.


shaan@shanti:~/CLM/test3$ sudo ./case.build
Building case in directory /home/shaan/CLM/test3
sharedlib_only is False
model_only is False
Generating component namelists as part of build
Creating component namelists
Calling /home/shaan/clm5.0/cime/src/components/data_comps/datm/cime_config/buildnml
File not found: domainfile = "/home/shaan/CLM/CLMinput/share/domains/domain.lnd.fv1.9x2.5_gx1v7.181205.nc", will attempt to download in check_input_data phase
Calling /home/shaan/clm5.0/cime_config/buildnml
...calling clm buildcpp to set build time options
Calling /home/shaan/clm5.0/cime/src/components/stub_comps/sice/cime_config/buildnml
Calling /home/shaan/clm5.0/cime/src/components/stub_comps/socn/cime_config/buildnml
Calling /home/shaan/clm5.0/components/rtm//cime_config/buildnml
File not found: frivinp_rtm = "/home/shaan/CLM/CLMinput/lnd/clm2/rtmdata/rdirc_0.5x0.5_simyr2000_slpmxvl_c120717.nc", will attempt to download in check_input_data phase
File not found: finidat_rtm = "/home/shaan/CLM/CLMinput/rof/rtm/initdata/rtmi.I1850CRUCLM45BGC.0241-01-01.R05_simyr1850_c130515.nc", will attempt to download in check_input_data phase
Calling /home/shaan/clm5.0/cime/src/components/stub_comps/sglc/cime_config/buildnml
Calling /home/shaan/clm5.0/cime/src/components/stub_comps/swav/cime_config/buildnml
Calling /home/shaan/clm5.0/cime/src/components/stub_comps/sesp/cime_config/buildnml
Calling /home/shaan/clm5.0/cime/src/drivers/mct/cime_config/buildnml
File not found: lnd2rof_fmapname = "lnd/clm2/mappingdata/maps/1.9x2.5/map_1.9x2.5_nomask_to_0.5x0.5_nomask_aave_da_c120522.nc", will attempt to download in check_input_data phase
File not found: rof2lnd_fmapname = "lnd/clm2/mappingdata/maps/1.9x2.5/map_0.5x0.5_nomask_to_1.9x2.5_nomask_aave_da_c120709.nc", will attempt to download in check_input_data phase
Finished creating component namelists
Building gptl with output to file /home/shaan/CLM/CLMoutput/test3/bld/gptl.bldlog.191223-121830
Calling /home/shaan/clm5.0/cime/src/build_scripts/buildlib.gptl
ERROR: /home/shaan/clm5.0/cime/src/build_scripts/buildlib.gptl FAILED, cat /home/shaan/CLM/CLMoutput/test3/bld/gptl.bldlog.191223-121830

 

[jedwards]

From your case directory run ./check_input_data --download

 

[Anuj]

Dear Sir,
I checked and run ./check_input_data --download script and downlaoded the datasets, and then confirmed again whether any data remains to download or not, using ./check_input_data script.
And to build the case run ./case.build but getting these errors. please help me regarding this.
Looking for your responce.

Here i have attched the pio.bldlog.200101-123812 file >>

gmake[3]: 'pio/CMakeFiles/pio.dir/iompi_mod.F90.o.provides.build' is up to date.
gmake[3]: Leaving directory '/home/wcl/CLM_5_run/CLMOutput/test7/bld/gnu/mpich/nodebug/nothreads/pio/pio1'
gmake -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/ionf_mod.F90.o.provides.build
gmake[3]: Entering directory '/home/wcl/CLM_5_run/CLMOutput/test7/bld/gnu/mpich/nodebug/nothreads/pio/pio1'
gmake[3]: 'pio/CMakeFiles/pio.dir/calcdisplace_mod.F90.o.provides.build' is up to date.
gmake[3]: Leaving directory '/home/wcl/CLM_5_run/CLMOutput/test7/bld/gnu/mpich/nodebug/nothreads/pio/pio1'
gmake -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/pionfatt_mod.F90.o.provides.build
gmake[3]: Entering directory '/home/wcl/CLM_5_run/CLMOutput/test7/bld/gnu/mpich/nodebug/nothreads/pio/pio1'
gmake[3]: 'pio/CMakeFiles/pio.dir/ionf_mod.F90.o.provides.build' is up to date.
gmake[3]: Leaving directory '/home/wcl/CLM_5_run/CLMOutput/test7/bld/gnu/mpich/nodebug/nothreads/pio/pio1'
gmake[3]: Entering directory '/home/wcl/CLM_5_run/CLMOutput/test7/bld/gnu/mpich/nodebug/nothreads/pio/pio1'
gmake[3]: 'pio/CMakeFiles/pio.dir/nf_mod.F90.o.provides.build' is up to date.
gmake[3]: Leaving directory '/home/wcl/CLM_5_run/CLMOutput/test7/bld/gnu/mpich/nodebug/nothreads/pio/pio1'
gmake -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/pionfget_mod.F90.o.provides.build
gmake -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/pionfwrite_mod.F90.o.provides.build
gmake[3]: Entering directory '/home/wcl/CLM_5_run/CLMOutput/test7/bld/gnu/mpich/nodebug/nothreads/pio/pio1'
gmake[3]: 'pio/CMakeFiles/pio.dir/pionfread_mod.F90.o.provides.build' is up to date.
gmake[3]: Leaving directory '/home/wcl/CLM_5_run/CLMOutput/test7/bld/gnu/mpich/nodebug/nothreads/pio/pio1'
gmake[3]: Entering directory '/home/wcl/CLM_5_run/CLMOutput/test7/bld/gnu/mpich/nodebug/nothreads/pio/pio1'
gmake[3]: 'pio/CMakeFiles/pio.dir/pionfatt_mod.F90.o.provides.build' is up to date.
gmake[3]: Leaving directory '/home/wcl/CLM_5_run/CLMOutput/test7/bld/gnu/mpich/nodebug/nothreads/pio/pio1'
gmake -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/box_rearrange.F90.o.provides.build
gmake -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/pionfput_mod.F90.o.provides.build
gmake[3]: Entering directory '/home/wcl/CLM_5_run/CLMOutput/test7/bld/gnu/mpich/nodebug/nothreads/pio/pio1'
gmake[3]: 'pio/CMakeFiles/pio.dir/box_rearrange.F90.o.provides.build' is up to date.
gmake[3]: Leaving directory '/home/wcl/CLM_5_run/CLMOutput/test7/bld/gnu/mpich/nodebug/nothreads/pio/pio1'
gmake -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/rearrange.F90.o.provides.build
gmake[3]: Entering directory '/home/wcl/CLM_5_run/CLMOutput/test7/bld/gnu/mpich/nodebug/nothreads/pio/pio1'
gmake[3]: 'pio/CMakeFiles/pio.dir/pionfput_mod.F90.o.provides.build' is up to date.
gmake[3]: Leaving directory '/home/wcl/CLM_5_run/CLMOutput/test7/bld/gnu/mpich/nodebug/nothreads/pio/pio1'
gmake[3]: Entering directory '/home/wcl/CLM_5_run/CLMOutput/test7/bld/gnu/mpich/nodebug/nothreads/pio/pio1'
gmake[3]: 'pio/CMakeFiles/pio.dir/pionfget_mod.F90.o.provides.build' is up to date.
gmake[3]: Leaving directory '/home/wcl/CLM_5_run/CLMOutput/test7/bld/gnu/mpich/nodebug/nothreads/pio/pio1'
gmake[3]: Entering directory '/home/wcl/CLM_5_run/CLMOutput/test7/bld/gnu/mpich/nodebug/nothreads/pio/pio1'
gmake[3]: 'pio/CMakeFiles/pio.dir/pionfwrite_mod.F90.o.provides.build' is up to date.
gmake[3]: Leaving directory '/home/wcl/CLM_5_run/CLMOutput/test7/bld/gnu/mpich/nodebug/nothreads/pio/pio1'
gmake[3]: Entering directory '/home/wcl/CLM_5_run/CLMOutput/test7/bld/gnu/mpich/nodebug/nothreads/pio/pio1'
gmake[3]: 'pio/CMakeFiles/pio.dir/rearrange.F90.o.provides.build' is up to date.
gmake[3]: Leaving directory '/home/wcl/CLM_5_run/CLMOutput/test7/bld/gnu/mpich/nodebug/nothreads/pio/pio1'
gmake -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/piodarray.F90.o.provides.build
gmake[3]: Entering directory '/home/wcl/CLM_5_run/CLMOutput/test7/bld/gnu/mpich/nodebug/nothreads/pio/pio1'
gmake[3]: 'pio/CMakeFiles/pio.dir/piodarray.F90.o.provides.build' is up to date.
gmake[3]: Leaving directory '/home/wcl/CLM_5_run/CLMOutput/test7/bld/gnu/mpich/nodebug/nothreads/pio/pio1'
gmake -f pio/CMakeFiles/pio.dir/build.make pio/CMakeFiles/pio.dir/piolib_mod.F90.o.provides.build
gmake[3]: Entering directory '/home/wcl/CLM_5_run/CLMOutput/test7/bld/gnu/mpich/nodebug/nothreads/pio/pio1'
[ 2%] Building Fortran object pio/CMakeFiles/pio.dir/piolib_mod.F90.o
cd /home/wcl/CLM_5_run/CLMOutput/test7/bld/gnu/mpich/nodebug/nothreads/pio/pio1/pio && /usr/local/bin/mpif90 -D_NETCDF -D_NOPNETCDF -D_NOUSEMCT -D_USEBOX -I/home/wcl/clm5.0/cime/src/externals/pio1/pio -I/home/wcl/CLM_5_run/CLMOutput/test7/bld/gnu/mpich/nodebug/nothreads/pio/pio1/pio -I/usr/local/include -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -O -DTIMING -DLinux -DNDEBUG -DHAVE_MPI -DPIO1 -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DFORTRANUNDERSCORE -DNO_R16 -D_NO_MPI_RSEND -I. -I/home/wcl/CLM_5_run/CLMOutput/test7/bld/gnu/mpich/nodebug/nothreads/include -I/home/wcl/CLM_5_run/CLMOutput/test7/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/usr/local/include -I/home/wcl/CLM_5_run/CLMOutput/test7/bld/gnu/mpich/nodebug/nothreads/include -ffree-line-length-none -c /home/wcl/clm5.0/cime/src/externals/pio1/pio/piolib_mod.F90 -o CMakeFiles/pio.dir/piolib_mod.F90.o
pio/CMakeFiles/pio.dir/build.make:233: recipe for target 'pio/CMakeFiles/pio.dir/piolib_mod.F90.o' failed
gmake[3]: Leaving directory '/home/wcl/CLM_5_run/CLMOutput/test7/bld/gnu/mpich/nodebug/nothreads/pio/pio1'
pio/CMakeFiles/pio.dir/build.make:249: recipe for target 'pio/CMakeFiles/pio.dir/piolib_mod.F90.o.provides' failed
gmake[2]: Leaving directory '/home/wcl/CLM_5_run/CLMOutput/test7/bld/gnu/mpich/nodebug/nothreads/pio/pio1'
CMakeFiles/Makefile2:88: recipe for target 'pio/CMakeFiles/pio.dir/all' failed
gmake[1]: Leaving directory '/home/wcl/CLM_5_run/CLMOutput/test7/bld/gnu/mpich/nodebug/nothreads/pio/pio1'
Makefile:86: recipe for target 'all' failed
f951: Warning: Nonexistent include directory ‘/home/wcl/CLM_5_run/CLMOutput/test7/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include’ [-Wmissing-include-dirs]
f951: Fatal Error: Reading module ‘piodarray’ at line 1600 column 3: Unexpected EOF
compilation terminated.
gmake[3]: *** [pio/CMakeFiles/pio.dir/piolib_mod.F90.o] Error 1
gmake[2]: *** [pio/CMakeFiles/pio.dir/piolib_mod.F90.o.provides] Error 2
gmake[1]: *** [pio/CMakeFiles/pio.dir/all] Error 2
gmake: *** [all] Error 2
ERROR: f951: Warning: Nonexistent include directory /home/wcl/CLM_5_run/CLMOutput/test7/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include [-Wmissing-include-dirs]
f951: Fatal Error: Reading module piodarray at line 1600 column 3: Unexpected EOF
compilation terminated.
gmake[3]: *** [pio/CMakeFiles/pio.dir/piolib_mod.F90.o] Error 1
gmake[2]: *** [pio/CMakeFiles/pio.dir/piolib_mod.F90.o.provides] Error 2
gmake[1]: *** [pio/CMakeFiles/pio.dir/all] Error 2
gmake: *** [all] Error 2

 

[Anuj]

Dear Sir,
I checked and run ./check_input_data --download script and downlaoded the datasets, and then confirmed again whether any data remains to download or not, using ./check_input_data script.
And to build the case run ./case.build but getting these errors. please help me regarding this.
Looking for your responce.

Here i have attched the pio.bldlog.200101-123812 file >>

From your case directory run ./check_input_data --download

 

[jedwards]

This error suggests that perhaps you are out of disk space in your build directory:
f951: Fatal Error: Reading module ‘piodarray’ at line 1600 column 3: Unexpected EOF

Are you exceeding a quota on the /home file system? Do you have another file system available to try?