Scheduled Downtime
On Tuesday 24 October 2023 @ 5pm MT the forums will be in read only mode in preparation for the downtime. On Wednesday 25 October 2023 @ 5am MT, this website will be down for maintenance and expected to return online later in the morning.
Normal Operations
The forums are back online with normal operations. If you notice any issues or errors related to the forums, please reach out to help@ucar.edu

Problem running on Pleiades

B

brian_thomas@washburn_edu

New Member
A few months ago I successfully ran CESM 1.2.2 on the NASA HEC machine, Pleiades.  They have since updated the OS and now the "cesm_setup" script fails. Here's what I'm getting after creating a new case and running "cesm_setup".  Note that I can get past  "Unable to locate modulefile" by modifying the env_mach_specific file to "module load pkgsrc/2016Q4", but that package does not actually contain the modules listed in the default env_mach_specific file.  And the remaining errors with "preview_namelist" still come up. bcthoma3@pfe21:~/cesm/cases/F_1850_WACCM_1.9x2.5_ivy3> ./cesm_setup
Macros script already created ...skipping
 Machine/Decomp/Pes configuration has already been done ...skipping
 Running preview_namelist script
ModuleCmd_Load.c(208):ERROR:105: Unable to locate a modulefile for 'comp-intel/2013.5.192'
ModuleCmd_Load.c(208):ERROR:105: Unable to locate a modulefile for 'mpi-sgi/mpt.2.08r7'
ModuleCmd_Load.c(208):ERROR:105: Unable to locate a modulefile for 'netcdf/4.0-i10.1'
ModuleCmd_Load.c(208):ERROR:105: Unable to locate a modulefile for 'cmake/2.8.12.1'
ModuleCmd_Load.c(208):ERROR:105: Unable to locate a modulefile for 'comp-intel/2013.5.192'
ModuleCmd_Load.c(208):ERROR:105: Unable to locate a modulefile for 'mpi-sgi/mpt.2.08r7'
ModuleCmd_Load.c(208):ERROR:105: Unable to locate a modulefile for 'netcdf/4.0-i10.1'
ModuleCmd_Load.c(208):ERROR:105: Unable to locate a modulefile for 'cmake/2.8.12.1'
syntax error at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 784, near "$model qw(cpl atm lnd ice ocn glc rof wav)"
Global symbol "$model" requires explicit package name at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 787.
Global symbol "$model" requires explicit package name at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 792.
Global symbol "$model" requires explicit package name at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 793.
Global symbol "$model" requires explicit package name at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 794.
Global symbol "$model" requires explicit package name at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 795.
Global symbol "$model" requires explicit package name at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 796.
Global symbol "$model" requires explicit package name at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 797.
Global symbol "$model" requires explicit package name at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 798.
Global symbol "$model" requires explicit package name at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 799.
Global symbol "$model" requires explicit package name at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 813.
Global symbol "$model" requires explicit package name at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 815.
Global symbol "$model" requires explicit package name at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 821.
Global symbol "$model" requires explicit package name at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 823.
Global symbol "$model" requires explicit package name at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 829.
Global symbol "$model" requires explicit package name at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 835.
Global symbol "$model" requires explicit package name at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 841.
Global symbol "$model" requires explicit package name at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 847.
Global symbol "$model" requires explicit package name at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 853.
Global symbol "$model" requires explicit package name at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 859.
Global symbol "$model" requires explicit package name at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 865.
Global symbol "$model" requires explicit package name at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 871.
syntax error at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 881, near "}"
/home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist has too many errors.
ERROR: cpl.buildnml.csh failed
ERROR: /home1/bcthoma3/cesm/cases/F_1850_WACCM_1.9x2.5_ivy3/preview_namelists failed: 25344
 
F

fvitt

CSEG and Liaisons
Staff member
Hi Brian,I made updates to the scripts for cesm1.2.2 found under /home6/fvitt/cesm/cesm1_2_2/scriptsGive this version a try.Regards,Francis   
 
B

brian_thomas@washburn_edu

New Member
Thanks, Francis.  I tried creating new cases using all three of the different Pleiades machine setups (ivy, san, wes) and still get similar errors as before: bcthoma3@pfe22:~/cesm/cases/F_1850_WACCM_1.9x2.5_wesNew> ./cesm_setup
Creating Macros file for pleiades-wes
/home1/bcthoma3/cesm/cesm1_2_2/scripts/ccsm_utils/Machines/config_compilers.xml intel pleiades-wes
Creating batch script F_1850_WACCM_1.9x2.5_wesNew.run
Locking file env_mach_pes.xml
Creating user_nl_xxx files for components and cpl
Running preview_namelist script
syntax error at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 784, near "$model qw(cpl atm lnd ice ocn glc rof wav)"
Global symbol "$model" requires explicit package name at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 787.
Global symbol "$model" requires explicit package name at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 792.
Global symbol "$model" requires explicit package name at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 793.
Global symbol "$model" requires explicit package name at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 794.
Global symbol "$model" requires explicit package name at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 795.
Global symbol "$model" requires explicit package name at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 796.
Global symbol "$model" requires explicit package name at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 797.
Global symbol "$model" requires explicit package name at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 798.
Global symbol "$model" requires explicit package name at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 799.
Global symbol "$model" requires explicit package name at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 813.
Global symbol "$model" requires explicit package name at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 815.
Global symbol "$model" requires explicit package name at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 821.
Global symbol "$model" requires explicit package name at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 823.
Global symbol "$model" requires explicit package name at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 829.
Global symbol "$model" requires explicit package name at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 835.
Global symbol "$model" requires explicit package name at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 841.
Global symbol "$model" requires explicit package name at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 847.
Global symbol "$model" requires explicit package name at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 853.
Global symbol "$model" requires explicit package name at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 859.
Global symbol "$model" requires explicit package name at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 865.
Global symbol "$model" requires explicit package name at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 871.
syntax error at /home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist line 881, near "}"
/home1/bcthoma3/cesm/cesm1_2_2/models/drv/bld/build-namelist has too many errors.
ERROR: cpl.buildnml.csh failed
ERROR: /home1/bcthoma3/cesm/cases/F_1850_WACCM_1.9x2.5_wesNew/preview_namelists failed: 25344
 
F

fvitt

CSEG and Liaisons
Staff member
Brian,I failed to mention I have also an update in  models/drv/bld/build-namelistYou can cd to /home6/fvitt/cesm/cesm1_2_2/scripts and invoke create_newcase from there rather than copy my modifications to your local copy of cesmThe current vaild pleiades machines are:  pleiades-ivy  pleiades-has  pleiades-san  
 
You must log in or register to reply here.
Top