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Problem while setting up a case

V

vhuggannavar@gmail_com

New Member
Whenever I try to setup the case using ./case.setup command. i get the following error on my Linux Ubuntu 16.0.4 machine.
ERROR: module command /usr/bin/modulecmd python purge failed with message:
/bin/sh: 1: /usr/bin/modulecmd: not found
 
D

dbailey

CSEG and Liaisons
Staff member
Looks like you do not have modules on your machine, or the module environment is different. You should consult the porting guide and the porting forum. I am moving this post there.
 
J

jedwards

CSEG and Liaisons
Staff member
If your system does not have modules use the following line in config_machines.xml
<module_system type="none" />
 
V

vhuggannavar@gmail_com

New Member
Dear jedwards and dbailey,
Thank you for the prompt reply. I solved the problem by using sudo apt-get install environment-modules. But now I have a different error which says source not found when i run case.setup . Please find the log file below.
Thank you,
Vinayak
 

Attachments

  • error.txt
    764 bytes · Views: 27
J

jedwards

CSEG and Liaisons
Staff member
What happens when you run "source /usr/share/Modules/init/sh && module list" from the command line?

Is the path to Modules/init above correct? If not you may need to make a copy of the centos7-linux machine

definition and make changes to define your own machines.
 
V

vhuggannavar@gmail_com

New Member
jedwards said:
What happens when you run "source /usr/share/Modules/init/sh && module list" from the command line?

Is the path to Modules/init above correct? If not you may need to make a copy of the centos7-linux machine

definition and make changes to define your own machines.
Click to expand...
I realized this problem. Tried changing the path of modules to my actual system path i.e. /use/share/modules/init/sh in env_machine_specific.xml, but still the same error is occuring.
 
V

vhuggannavar@gmail_com

New Member
Dear jedwards,
Thank you for your help so far. Now, when i run ftp server for data download is not responding. Also, I get following error at the end of build. I thought this might be due to BLAS and LAPACK. But, when i ran a trivial .F90 codes based on BLAS and LAPACK they were working perfectly.

Building cesm with output to /home/user/cesm/scratch/test/bld/cesm.bldlog.200224-105225
matrix_operations.F90:(.text+0xd4): undefined reference to `dsyev_'

matrix_operations.F90:(.text+0x65c): undefined reference to `dpoequ_'

matrix_operations.F90:(.text+0x6a9): undefined reference to `dlaqsy_'

matrix_operations.F90:(.text+0x7c0): undefined reference to `dpotrf_'

lapack_wrap.F90:(.text+0x4f6): undefined reference to `dgbsv_'

lapack_wrap.F90:(.text+0xd84): undefined reference to `dgbsvx_'

lapack_wrap.F90:(.text+0x15f4): undefined reference to `dgtsv_'

lapack_wrap.F90:(.text+0x1ade): undefined reference to `dgtsvx_'

SoilWaterMovementMod.F90:(.text+0x2cc8): undefined reference to `dgtsv_'

UrbBuildTempOleson2015Mod.F90:(.text+0x2b51): undefined reference to `dgesv_'

BandDiagonalMod.F90:(.text+0x928): undefined reference to `dgbsv_'

glam_strs2.F90:(.text+0x6aa): undefined reference to `dcopy_'

glam_strs2.F90:(.text+0x712): undefined reference to `ddot_'

glam_strs2.F90:(.text+0x922): undefined reference to `dcopy_'

glam_strs2.F90:(.text+0x951): undefined reference to `dcopy_'

glam_strs2.F90:(.text+0x9a5): undefined reference to `ddot_'

glam_strs2.F90:(.text+0xa24): undefined reference to `daxpy_'

glam_strs2.F90:(.text+0xa69): undefined reference to `ddot_'

glam_strs2.F90:(.text+0xea1): undefined reference to `daxpy_'

glam_strs2.F90:(.text+0xfd2): undefined reference to `daxpy_'

dcgs.f:(.text+0x6c): undefined reference to `dnrm2_'

dcgs.f:(.text+0xf1): undefined reference to `dnrm2_'

dcgs.f:(.text+0x170): undefined reference to `dnrm2_'

dcgs.f:(.text+0x196): undefined reference to `dnrm2_'

dcgs.f:(.text+0x1d6): undefined reference to `dnrm2_'

dcgs.f:(.text+0x693): undefined reference to `ddot_'

dcgs.f:(.text+0x824): undefined reference to `ddot_'

dcgs.f:(.text+0x8d7): undefined reference to `daxpy_'

dcgs.f:(.text+0x978): undefined reference to `daxpy_'

dcg.f:(.text+0x54): undefined reference to `dnrm2_'

dcg.f:(.text+0x7a): undefined reference to `dnrm2_'

dcg.f:(.text+0xf2): undefined reference to `dnrm2_'

dcg.f:(.text+0x118): undefined reference to `dnrm2_'

dcg.f:(.text+0x150): undefined reference to `dnrm2_'

dcg.f:(.text+0x551): undefined reference to `ddot_'

dcg.f:(.text+0x5a1): undefined reference to `dcopy_'

dcg.f:(.text+0x631): undefined reference to `ddot_'

dcg.f:(.text+0x685): undefined reference to `daxpy_'

dcg.f:(.text+0x6ba): undefined reference to `daxpy_'

dgmres.f:(.text+0x118): undefined reference to `daxpy_'

dgmres.f:(.text+0x183): undefined reference to `dcopy_'

dgmres.f:(.text+0x2ad): undefined reference to `dscal_'

dgmres.f:(.text+0x6ea): undefined reference to `dnrm2_'

dgmres.f:(.text+0x778): undefined reference to `ddot_'

dgmres.f:(.text+0x7c8): undefined reference to `daxpy_'

dgmres.f:(.text+0x7f9): undefined reference to `dnrm2_'

dgmres.f:(.text+0x88c): undefined reference to `ddot_'

dgmres.f:(.text+0x8f8): undefined reference to `daxpy_'

dgmres.f:(.text+0xa7c): undefined reference to `daxpy_'

dgmres.f:(.text+0xb00): undefined reference to `dcopy_'

dgmres.f:(.text+0xca4): undefined reference to `dnrm2_'

dgmres.f:(.text+0xd2f): undefined reference to `dscal_'

dgmres.f:(.text+0xe16): undefined reference to `dscal_'

dgmres.f:(.text+0x10d4): undefined reference to `dcopy_'

dgmres.f:(.text+0x110c): undefined reference to `dnrm2_'

dgmres.f:(.text+0x1168): undefined reference to `dnrm2_'

dgmres.f:(.text+0x14e7): undefined reference to `dcopy_'

dgmres.f:(.text+0x15da): undefined reference to `dnrm2_'

dgmres.f:(.text+0x1754): undefined reference to `dscal_'

dgmres.f:(.text+0x1878): undefined reference to `dcopy_'

dgmres.f:(.text+0x19e6): undefined reference to `dcopy_'

dgmres.f:(.text+0x1bfe): undefined reference to `dcopy_'

dgmres.f:(.text+0x1d3f): undefined reference to `dnrm2_'

dgmres.f:(.text+0x1ee8): undefined reference to `dscal_'

dgmres.f:(.text+0x20cd): undefined reference to `daxpy_'

dgmres.f:(.text+0x2153): undefined reference to `dcopy_'

dgmres.f:(.text+0x2466): undefined reference to `dcopy_'

dgmres.f:(.text+0x24e3): undefined reference to `dnrm2_'

dgmres.f:(.text+0x2602): undefined reference to `dcopy_'

ERROR: BUILD FAIL: buildexe failed, cat /home/user/cesm/scratch/test/bld/cesm.bldlog.200224-105225
 
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