Problems with case.submit in cesm2_1_3

[agustin@unex_es]

Hi every body, I hope you all are well

I have a problem submiting a case. I get an error:
Calling /lustre/lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/cesm2_1_3/components/clm//cime_config/buildnml
ERROR: Command /lustre/lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/cesm2_1_3/components/clm/bld/build-namelist failed rc=255
out=
err=::ERROR(Build::Namelist::_parse_next): expect a equal '=' sign or '+=', instead got: use_init_interp=.true.

This error do not appear in older versions.

Any help is wellcome.

Take care,

Agustin

 

[nusbaume]

Hi Agustin,

It looks like it is CLM's build-namelist script that is failing, so I am going to move this thread over to the CLM forum, as hopefully someone there knows this particular script well enough to help you with your issue.

Also, to help with debugging this problem, can you check to see if you are able to run the preview_namelists script in your case directory? It would be good to know if this error shows up in other situations that might call build-namelist, or if it only shows up when using the case.submit script.

Thanks, and have a great day!

Jesse

 

[erik]

Agustin

Can you show us what your user_nl_clm looks like? I think it's failing on reading it.

 

[agustin@unex_es]

Hi Erik and Jesse, thank very much for yours answers. Efectively there was a problem with the namelist. It was not well written. Now I have problems
reading the file:

Opened existing file
/lusitania_homes/UniversidadDeExtremadura/joseagustin.garcia/Documents/CESM/inp
utdata/atm/cam/topo/fv_0.9x1.25_nc3000_Nsw042_Nrs008_Co060_Fi001_ZR_sgh30_24km_
GRNL_c170103.nc -1
pio_support::pio_die:: myrank= -1 : ERROR: nf_mod.F90: 1281 :
PNETCDF not enabled in the build
pio_support::pio_die:: myrank= -1 : ERROR: nf_mod.F90: 1281 :
PNETCDF not enabled in the build
pio_support::pio_die:: myrank= -1 : ERROR: nf_mod.F90: 1281 :
PNETCDF not enabled in the build
pio_support::pio_die:: myrank= -1 : ERROR: nf_mod.F90: 1281 :

I did not have this problem when runnging version CESM2.1.2. Both versions have been built without PNETCDF support.



Take care,

Agustin

 

[nusbaume]

Hi Agustin,

I believe the message:

PNETCDF not enabled in the build

indicates that the pio library did not compile properly (even if you don't have PNETCDF enabled). I would try fully cleaning your build, i.e.:

./case.build --clean-all

and then re-building the model again (./case.build), while keeping an eye out for any pio errors. If you still have this error appear, then I would recommend making a new post in the "Infrastructure" forum located here:

Infrastructure (CIME, porting, machines, scripts)

CIME, case control system, build and configure, machines and supporting scripts.

bb.cgd.ucar.edu

and someone with expertise in PIO and/or PNETCDF should be able to help you.

Hope that helps, and have a good weekend!

Jesse

 

[agustin@unex_es]

Thanks again Jesse, I rebuild the model and now it works.

Take care,

Agustin